Wall clock time and date at job start Sat Apr 11 2020 06:21:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 119.99873 * 2 1 4 4 H 1.48496 * 109.47255 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47191 * 299.99713 * 3 2 1 6 6 H 1.48501 * 109.46910 * 59.99551 * 3 2 1 7 7 C 1.37875 * 119.99917 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99442 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00364 * 0.02562 * 7 2 1 10 10 N 1.46901 * 109.47232 * 175.06831 * 9 7 2 11 11 C 1.46900 * 110.99729 * 75.19369 * 10 9 7 12 12 C 1.53001 * 109.47533 * 199.77416 * 11 10 9 13 13 N 1.46898 * 109.47501 * 175.36124 * 12 11 10 14 14 C 1.47014 * 111.00062 * 293.63862 * 13 12 11 15 15 C 1.53103 * 109.25641 * 177.60522 * 14 13 12 16 16 O 1.43017 * 109.25495 * 56.84531 * 15 14 13 17 17 C 1.43009 * 113.74221 * 301.32850 * 16 15 14 18 18 C 1.47015 * 111.00066 * 169.99970 * 13 12 11 19 19 C 1.46899 * 110.99940 * 199.14605 * 10 9 7 20 20 C 1.50699 * 109.47033 * 66.05332 * 19 10 9 21 21 N 1.29027 * 124.91573 * 89.71527 * 20 19 10 22 22 C 1.31787 * 117.11854 * 179.81189 * 21 20 19 23 23 C 1.50700 * 122.74851 * 180.22773 * 22 21 20 24 24 O 1.42897 * 109.47116 * 180.24274 * 23 22 21 25 25 C 1.33633 * 114.50248 * 0.47757 * 22 21 20 26 26 S 1.70973 * 124.91237 * 270.02236 * 20 19 10 27 27 H 0.96996 * 120.00589 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.46960 * 55.07319 * 9 7 2 29 29 H 1.08995 * 109.47526 * 295.07142 * 9 7 2 30 30 H 1.09002 * 109.46981 * 79.77188 * 11 10 9 31 31 H 1.08995 * 109.47326 * 319.77803 * 11 10 9 32 32 H 1.09005 * 109.46363 * 55.36199 * 12 11 10 33 33 H 1.08999 * 109.46855 * 295.36880 * 12 11 10 34 34 H 1.08994 * 109.50511 * 297.54026 * 14 13 12 35 35 H 1.09004 * 109.50554 * 57.67265 * 14 13 12 36 36 H 1.09001 * 109.50247 * 296.91820 * 15 14 13 37 37 H 1.08996 * 109.53935 * 176.80893 * 15 14 13 38 38 H 1.08997 * 109.51105 * 298.73591 * 17 16 15 39 39 H 1.09004 * 109.54232 * 178.62607 * 17 16 15 40 40 H 1.08998 * 109.50634 * 302.33068 * 18 13 12 41 41 H 1.08999 * 109.50239 * 62.41522 * 18 13 12 42 42 H 1.09007 * 109.46490 * 186.04687 * 19 10 9 43 43 H 1.08991 * 109.47190 * 306.04504 * 19 10 9 44 44 H 1.08998 * 109.47347 * 300.24694 * 23 22 21 45 45 H 1.09004 * 109.47168 * 60.24551 * 23 22 21 46 46 H 0.96704 * 114.00091 * 179.97438 * 24 23 22 47 47 H 1.08001 * 126.04216 * 179.71793 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8902 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2013 -3.6132 -0.1179 11 6 2.9060 -3.8410 1.1507 12 6 4.1902 -4.6297 0.8864 13 7 4.9500 -4.7617 2.1366 14 6 5.4390 -3.4538 2.5966 15 6 6.1719 -3.6290 3.9294 16 8 7.2310 -4.5757 3.7644 17 6 6.7902 -5.8608 3.3178 18 6 6.0637 -5.7083 1.9789 19 6 1.5252 -4.8359 -0.5716 20 6 1.0249 -4.6403 -1.9796 21 7 1.6993 -4.9071 -3.0467 22 6 1.1091 -4.6800 -4.2029 23 6 1.7772 -4.9505 -5.5263 24 8 0.8889 -4.5990 -6.5890 25 6 -0.1284 -4.1852 -4.1056 26 16 -0.5158 -4.0257 -2.3941 27 1 -0.4851 0.8400 -0.0004 28 1 0.5602 -2.5198 -0.8423 29 1 0.6919 -2.5960 0.9311 30 1 2.2645 -4.4071 1.8261 31 1 3.1555 -2.8823 1.6051 32 1 4.7945 -4.1029 0.1478 33 1 3.9369 -5.6203 0.5087 34 1 6.1238 -3.0405 1.8562 35 1 4.5955 -2.7767 2.7312 36 1 5.4736 -3.9918 4.6836 37 1 6.5853 -2.6716 4.2466 38 1 6.1101 -6.2885 4.0544 39 1 7.6507 -6.5180 3.1922 40 1 5.6762 -6.6768 1.6627 41 1 6.7581 -5.3313 1.2281 42 1 2.2273 -5.6693 -0.5480 43 1 0.6835 -5.0511 0.0866 44 1 2.6876 -4.3559 -5.6021 45 1 2.0277 -6.0090 -5.5973 46 1 1.2541 -4.7470 -7.4722 47 1 -0.7766 -3.9278 -4.9303 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364931755.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:01 Heat of formation + Delta-G solvation = -28.050193 kcal Electronic energy + Delta-G solvation = -27867.793368 eV Core-core repulsion = 23985.108627 eV Total energy + Delta-G solvation = -3882.684741 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.62534 -39.46447 -37.33875 -36.55307 -35.36257 -32.66399 -31.33091 -31.01828 -29.47238 -27.79541 -26.83497 -26.55504 -24.65006 -23.99399 -22.50789 -21.79578 -20.35501 -20.04619 -19.07580 -17.94761 -16.67884 -16.61533 -16.29613 -16.12485 -15.44292 -15.38920 -15.09633 -15.01644 -14.91696 -14.74460 -14.21954 -14.02418 -13.87577 -13.51310 -13.02262 -12.77765 -12.74472 -12.35062 -12.14823 -12.02971 -11.92186 -11.71727 -11.37510 -11.30618 -11.09860 -10.85901 -10.72361 -10.61984 -10.60000 -10.34111 -10.15152 -9.86991 -9.61610 -9.36043 -9.19778 -8.85773 -8.47951 -8.27747 -8.18120 -7.41192 -6.05801 -4.06405 1.15338 1.84413 2.22829 3.10673 3.28326 3.36377 3.40623 3.74929 3.82139 3.92077 4.40145 4.78255 4.86543 4.98167 5.05643 5.08046 5.15477 5.19916 5.30805 5.31263 5.37807 5.46614 5.48931 5.55718 5.57085 5.63139 5.69455 5.76929 5.78072 5.87322 5.97364 6.00988 6.03229 6.08263 6.36373 6.45745 6.51211 6.98195 7.06574 7.15978 7.18631 7.19727 7.50486 7.73824 7.99228 8.07940 8.15385 8.43464 8.99347 9.56983 11.04637 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.007919 B = 0.003775 C = 0.002836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3534.766102 B = 7416.084262 C = 9871.112007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.502 4.502 8 H 0.062 0.938 9 C 0.182 3.818 10 N -0.528 5.528 11 C 0.070 3.930 12 C 0.061 3.939 13 N -0.537 5.537 14 C 0.013 3.987 15 C 0.064 3.936 16 O -0.390 6.390 17 C 0.065 3.935 18 C 0.019 3.981 19 C 0.128 3.872 20 C 0.076 3.924 21 N -0.464 5.464 22 C 0.049 3.951 23 C 0.159 3.841 24 O -0.570 6.570 25 C -0.248 4.248 26 S 0.152 5.848 27 H 0.261 0.739 28 H 0.043 0.957 29 H -0.008 1.008 30 H 0.032 0.968 31 H 0.088 0.912 32 H 0.045 0.955 33 H 0.068 0.932 34 H 0.043 0.957 35 H 0.096 0.904 36 H 0.058 0.942 37 H 0.096 0.904 38 H 0.057 0.943 39 H 0.094 0.906 40 H 0.083 0.917 41 H 0.041 0.959 42 H 0.091 0.909 43 H 0.047 0.953 44 H 0.065 0.935 45 H 0.062 0.938 46 H 0.384 0.616 47 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.717 -12.975 -1.881 14.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.541 4.541 8 H 0.080 0.920 9 C 0.057 3.943 10 N -0.254 5.254 11 C -0.058 4.058 12 C -0.067 4.067 13 N -0.263 5.263 14 C -0.115 4.115 15 C -0.013 4.013 16 O -0.308 6.308 17 C -0.012 4.012 18 C -0.110 4.110 19 C -0.003 4.003 20 C -0.203 4.203 21 N -0.180 5.180 22 C -0.084 4.084 23 C 0.079 3.921 24 O -0.375 6.375 25 C -0.388 4.388 26 S 0.408 5.592 27 H 0.071 0.929 28 H 0.061 0.939 29 H 0.010 0.990 30 H 0.050 0.950 31 H 0.106 0.894 32 H 0.064 0.936 33 H 0.087 0.913 34 H 0.062 0.938 35 H 0.114 0.886 36 H 0.077 0.923 37 H 0.114 0.886 38 H 0.076 0.924 39 H 0.112 0.888 40 H 0.101 0.899 41 H 0.059 0.941 42 H 0.109 0.891 43 H 0.065 0.935 44 H 0.083 0.917 45 H 0.080 0.920 46 H 0.232 0.768 47 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 5.039 -12.565 -0.690 13.556 hybrid contribution 0.762 0.868 -1.548 1.932 sum 5.802 -11.697 -2.239 13.247 Atomic orbital electron populations 1.69949 1.05930 1.26679 1.50837 1.24945 0.94853 0.99144 0.95451 0.86503 0.80129 0.83637 0.77554 1.19721 1.21037 1.21036 1.21086 0.93416 0.89617 1.49954 0.91999 1.20014 0.90480 0.87428 0.96352 1.62013 1.30603 1.03711 1.29102 1.21914 0.93303 1.00322 0.90275 1.22137 0.95190 1.00265 0.89089 1.62167 1.22792 1.09563 1.31807 1.22862 0.99938 0.91716 0.96964 1.22696 0.89453 0.92934 0.96179 1.87952 1.33389 1.21948 1.87553 1.22630 0.98726 0.85370 0.94474 1.22741 0.92902 0.97634 0.97711 1.20611 0.97617 0.95556 0.86522 1.26757 0.94174 1.00714 0.98666 1.65792 1.34702 1.20729 0.96808 1.19699 0.92276 1.02969 0.93412 1.20102 0.90498 0.99015 0.82470 1.86397 1.44538 1.89452 1.17149 1.26788 1.01980 1.10010 1.00040 1.84311 1.17771 1.57999 0.99107 0.92946 0.93941 0.98979 0.94983 0.89420 0.93640 0.91312 0.93824 0.88579 0.92320 0.88550 0.92428 0.88841 0.89880 0.94092 0.89113 0.93502 0.91683 0.91956 0.76843 0.80764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.87 13.29 55.43 0.74 -25.13 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.50 29.54 -169.99 -5.02 16.47 16 4 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 7 C -0.50 -13.74 8.51 -34.44 -0.29 -14.03 16 8 H 0.06 1.71 7.74 -52.48 -0.41 1.30 16 9 C 0.18 4.53 4.59 -4.98 -0.02 4.51 16 10 N -0.53 -10.94 4.35 -237.52 -1.03 -11.97 16 11 C 0.07 1.27 4.85 -3.82 -0.02 1.26 16 12 C 0.06 0.95 5.00 -3.82 -0.02 0.93 16 13 N -0.54 -7.49 4.73 -234.31 -1.11 -8.60 16 14 C 0.01 0.19 5.44 -3.71 -0.02 0.17 16 15 C 0.06 0.78 7.01 37.21 0.26 1.04 16 16 O -0.39 -5.08 10.83 -35.23 -0.38 -5.46 16 17 C 0.07 0.70 7.01 37.21 0.26 0.96 16 18 C 0.02 0.22 5.65 -3.71 -0.02 0.20 16 19 C 0.13 2.29 5.37 -4.98 -0.03 2.27 16 20 C 0.08 1.43 6.25 -13.46 -0.08 1.34 16 21 N -0.46 -8.76 10.53 -8.06 -0.08 -8.85 16 22 C 0.05 0.85 6.74 -84.22 -0.57 0.28 16 23 C 0.16 2.07 7.66 36.01 0.28 2.35 16 24 O -0.57 -6.60 12.59 -35.23 -0.44 -7.04 16 25 C -0.25 -4.23 10.56 29.12 0.31 -3.93 16 26 S 0.15 2.75 21.22 -107.50 -2.28 0.47 16 27 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 28 H 0.04 1.11 5.12 -51.93 -0.27 0.84 16 29 H -0.01 -0.20 8.01 -51.93 -0.42 -0.61 16 30 H 0.03 0.56 8.00 -51.93 -0.42 0.14 16 31 H 0.09 1.75 5.39 -51.93 -0.28 1.47 16 32 H 0.05 0.79 8.12 -51.93 -0.42 0.36 16 33 H 0.07 1.00 6.84 -51.93 -0.36 0.64 16 34 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.10 1.42 6.30 -51.93 -0.33 1.09 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.08 0.86 8.09 -51.93 -0.42 0.44 16 41 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.09 1.45 6.71 -51.93 -0.35 1.10 16 43 H 0.05 0.79 8.12 -51.93 -0.42 0.37 16 44 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 45 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.38 2.30 9.12 45.56 0.42 2.71 16 47 H 0.17 2.68 7.57 -52.49 -0.40 2.29 16 LS Contribution 387.01 15.07 5.83 5.83 Total: -1.00 -32.52 387.01 -10.42 -42.94 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -6.58 Total: 2.50 kcal Atomic # 6 Polarization: -1.09 SS G_CDS: -0.07 Total: -1.16 kcal Atomic # 7 Polarization: -53.06 SS G_CDS: -1.49 Total: -54.55 kcal Atomic # 8 Polarization: -11.68 SS G_CDS: -0.82 Total: -12.51 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: 2.75 SS G_CDS: -2.28 Total: 0.47 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.52 -10.42 -42.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364931755.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.889 kcal (2) G-P(sol) polarization free energy of solvation -32.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds