Wall clock time and date at job start Sat Apr 11 2020 06:21:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00172 * 2 1 4 4 H 1.48501 * 109.47344 * 240.00434 * 3 2 1 5 5 H 1.48499 * 109.47362 * 0.02562 * 3 2 1 6 6 H 1.48510 * 109.47097 * 120.00535 * 3 2 1 7 7 C 1.37879 * 119.99649 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99738 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00159 * 359.97438 * 7 2 1 10 10 C 1.53042 * 109.45874 * 180.02562 * 9 7 2 11 11 C 1.53198 * 109.31111 * 178.62829 * 10 9 7 12 12 N 1.46925 * 108.77617 * 54.63324 * 11 10 9 13 13 C 1.34779 * 120.63007 * 126.36366 * 12 11 10 14 14 O 1.21588 * 120.00019 * 5.02964 * 13 12 11 15 15 N 1.34776 * 119.99865 * 185.02038 * 13 12 11 16 16 C 1.39437 * 119.99777 * 174.78107 * 15 13 12 17 17 C 1.36084 * 126.28336 * 0.19156 * 16 15 13 18 18 C 1.39825 * 107.87659 * 180.26175 * 17 16 15 19 19 N 1.30832 * 108.49449 * 359.73847 * 18 17 16 20 20 N 1.36176 * 126.28374 * 180.02562 * 16 15 13 21 21 C 1.39756 * 126.11450 * 0.02562 * 20 16 15 22 22 C 1.38969 * 119.68800 * 154.71352 * 21 20 16 23 23 C 1.38393 * 119.10315 * 180.25400 * 22 21 20 24 24 C 1.38814 * 118.48803 * 359.48266 * 23 22 21 25 25 C 1.38112 * 119.29691 * 0.50351 * 24 23 22 26 26 N 1.31901 * 120.84146 * 359.75944 * 25 24 23 27 27 C 1.46927 * 118.73755 * 306.64632 * 12 11 10 28 28 C 1.52758 * 109.01243 * 53.30768 * 27 12 11 29 29 H 0.96997 * 119.99528 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.46303 * 299.97717 * 9 7 2 31 31 H 1.09004 * 109.49847 * 58.67740 * 10 9 7 32 32 H 1.08999 * 109.52411 * 298.59559 * 10 9 7 33 33 H 1.08996 * 109.58653 * 294.84265 * 11 10 9 34 34 H 1.08996 * 109.70227 * 174.49065 * 11 10 9 35 35 H 0.96998 * 120.00060 * 354.78449 * 15 13 12 36 36 H 1.08000 * 126.06211 * 359.97195 * 17 16 15 37 37 H 1.07996 * 125.74412 * 179.71793 * 18 17 16 38 38 H 1.07993 * 120.44631 * 359.97438 * 22 21 20 39 39 H 1.08002 * 120.75705 * 179.72332 * 23 22 21 40 40 H 1.08006 * 120.35288 * 180.22387 * 24 23 22 41 41 H 1.08003 * 119.58077 * 179.74683 * 25 24 23 42 42 H 1.09000 * 109.58260 * 173.14637 * 27 12 11 43 43 H 1.08999 * 109.58132 * 293.56214 * 27 12 11 44 44 H 1.08998 * 109.56696 * 185.55516 * 28 27 12 45 45 H 1.09002 * 109.38481 * 65.51481 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2843 2.7465 0.0006 6 1 3.1031 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2457 -3.6622 -0.0005 11 6 1.4766 -4.9866 0.0341 12 7 0.5223 -5.0087 -1.0829 13 6 0.5122 -6.0343 -1.9572 14 8 1.2336 -6.9959 -1.7748 15 7 -0.2978 -5.9942 -3.0337 16 6 -0.2304 -7.0021 -3.9949 17 6 0.5978 -8.0817 -3.9730 18 6 0.3484 -8.8373 -5.1227 19 7 -0.5943 -8.2466 -5.8112 20 7 -0.9835 -7.0885 -5.1261 21 6 -1.9648 -6.1807 -5.5338 22 6 -2.2798 -6.0674 -6.8826 23 6 -3.2497 -5.1607 -7.2734 24 6 -3.8807 -4.4038 -6.2958 25 6 -3.5174 -4.5690 -4.9736 26 7 -2.5853 -5.4375 -4.6319 27 6 -0.4164 -3.8884 -1.2322 28 6 0.3701 -2.5790 -1.2495 29 1 -0.4849 0.8401 0.0004 30 1 0.6250 -2.5571 0.8899 31 1 2.8881 -3.5915 0.8772 32 1 2.8561 -3.6194 -0.9025 33 1 0.9370 -5.0713 0.9773 34 1 2.1734 -5.8189 -0.0642 35 1 -0.9276 -5.2641 -3.1398 36 1 1.3227 -8.3114 -3.2061 37 1 0.8499 -9.7538 -5.3963 38 1 -1.7715 -6.6753 -7.6162 39 1 -3.5123 -5.0476 -8.3148 40 1 -4.6446 -3.6898 -6.5667 41 1 -4.0026 -3.9795 -4.2097 42 1 -0.9666 -3.9949 -2.1671 43 1 -1.1136 -3.8817 -0.3944 44 1 -0.3224 -1.7373 -1.2606 45 1 0.9977 -2.5456 -2.1401 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001466634668.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:03 Heat of formation + Delta-G solvation = 110.683083 kcal Electronic energy + Delta-G solvation = -29641.307651 eV Core-core repulsion = 25661.487637 eV Total energy + Delta-G solvation = -3979.820015 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.86235 -40.29846 -39.82570 -37.13718 -34.89208 -33.69314 -33.59206 -32.77977 -31.32763 -30.19611 -29.67820 -28.82577 -26.21431 -24.25581 -24.10612 -23.32602 -22.51566 -21.54512 -21.22194 -19.95409 -19.01610 -18.68899 -17.44534 -16.96878 -16.36606 -16.25393 -16.02374 -15.69487 -15.23932 -14.98648 -14.66151 -14.52996 -13.91723 -13.85609 -13.74419 -13.49853 -13.26796 -13.02516 -12.87575 -12.70388 -12.50804 -12.34360 -11.69203 -11.41207 -11.00764 -10.94064 -10.86857 -10.70573 -10.56244 -10.45333 -10.23288 -10.22697 -10.01948 -9.76974 -9.60953 -9.24089 -9.02745 -8.60349 -8.44391 -8.28965 -7.86721 -6.08270 -4.14223 0.48409 0.84163 1.73457 1.91082 2.77336 2.80732 3.26560 3.31268 3.34537 3.36555 3.51982 3.96590 4.04650 4.36284 4.36879 4.57882 4.68163 4.80480 4.94703 5.19953 5.20739 5.37173 5.41385 5.56828 5.60027 5.71361 5.80240 5.84770 5.95082 5.99026 6.09363 6.11677 6.18653 6.28870 6.38642 6.58500 6.67067 6.78637 6.89263 7.01906 7.06098 7.09421 7.24528 7.31714 7.60314 7.71325 7.85382 7.96610 8.06099 8.34572 8.64164 8.88914 9.51088 10.97297 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011704 B = 0.003300 C = 0.002725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2391.747088 B = 8483.401006 C =10271.631886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.062 3.938 3 Si 0.891 3.109 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.513 4.513 8 H 0.055 0.945 9 C 0.050 3.950 10 C -0.125 4.125 11 C 0.129 3.871 12 N -0.607 5.607 13 C 0.711 3.289 14 O -0.574 6.574 15 N -0.656 5.656 16 C 0.360 3.640 17 C -0.285 4.285 18 C 0.084 3.916 19 N -0.294 5.294 20 N -0.347 5.347 21 C 0.374 3.626 22 C -0.162 4.162 23 C -0.051 4.051 24 C -0.186 4.186 25 C 0.137 3.863 26 N -0.519 5.519 27 C 0.106 3.894 28 C -0.124 4.124 29 H 0.261 0.739 30 H 0.029 0.971 31 H 0.064 0.936 32 H 0.052 0.948 33 H 0.063 0.937 34 H 0.082 0.918 35 H 0.419 0.581 36 H 0.183 0.817 37 H 0.194 0.806 38 H 0.147 0.853 39 H 0.144 0.856 40 H 0.144 0.856 41 H 0.170 0.830 42 H 0.055 0.945 43 H 0.069 0.931 44 H 0.106 0.894 45 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.800 -10.967 -12.214 18.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.139 4.139 3 Si 0.719 3.281 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.551 4.551 8 H 0.073 0.927 9 C 0.031 3.969 10 C -0.163 4.163 11 C 0.007 3.993 12 N -0.343 5.343 13 C 0.413 3.587 14 O -0.452 6.452 15 N -0.309 5.309 16 C 0.141 3.859 17 C -0.317 4.317 18 C -0.104 4.104 19 N -0.114 5.114 20 N -0.131 5.131 21 C 0.147 3.853 22 C -0.184 4.184 23 C -0.077 4.077 24 C -0.207 4.207 25 C -0.020 4.020 26 N -0.233 5.233 27 C -0.016 4.016 28 C -0.163 4.163 29 H 0.071 0.929 30 H 0.047 0.953 31 H 0.082 0.918 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.101 0.899 35 H 0.261 0.739 36 H 0.200 0.800 37 H 0.211 0.789 38 H 0.165 0.835 39 H 0.162 0.838 40 H 0.161 0.839 41 H 0.187 0.813 42 H 0.073 0.927 43 H 0.087 0.913 44 H 0.124 0.876 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -7.941 -11.518 -12.135 18.520 hybrid contribution 0.225 1.598 -0.261 1.635 sum -7.716 -9.920 -12.396 17.653 Atomic orbital electron populations 1.69817 1.05844 1.26598 1.50851 1.24952 0.94880 0.99055 0.95014 0.86674 0.79645 0.83125 0.78656 1.20358 1.21304 1.20253 1.21169 0.92963 0.90538 1.50407 0.92685 1.18618 0.92624 0.91812 0.93819 1.22049 0.98935 0.94152 1.01207 1.21690 0.91000 0.99834 0.86744 1.47441 1.38175 1.20228 1.28432 1.15556 0.80299 0.83633 0.79254 1.90794 1.45202 1.33116 1.76058 1.42445 1.41810 1.25874 1.20747 1.17990 0.92889 0.91065 0.83933 1.21741 1.09107 0.96721 1.04118 1.23992 0.94192 0.99407 0.92791 1.77538 1.19393 0.95155 1.19327 1.45765 1.29575 1.20278 1.17441 1.17791 0.88569 0.89426 0.89532 1.21637 1.00797 1.01287 0.94714 1.21553 0.92962 0.92595 1.00623 1.22174 1.02519 1.02009 0.94015 1.22617 0.91053 0.92470 0.95877 1.66797 1.10141 1.08693 1.37672 1.21925 0.91747 0.87894 1.00019 1.21965 1.00141 0.94321 0.99830 0.92915 0.95270 0.91767 0.92876 0.91907 0.89925 0.73877 0.80047 0.78894 0.83537 0.83831 0.83865 0.81282 0.92676 0.91317 0.87578 0.94321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.81 11.31 55.43 0.63 -23.18 16 2 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 3 Si 0.89 20.49 29.54 -169.99 -5.02 15.47 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 6 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.51 -13.35 8.56 -34.44 -0.29 -13.64 16 8 H 0.05 1.43 7.74 -52.49 -0.41 1.03 16 9 C 0.05 1.15 2.07 -91.73 -0.19 0.96 16 10 C -0.13 -2.48 5.30 -26.61 -0.14 -2.62 16 11 C 0.13 2.30 6.42 -3.71 -0.02 2.28 16 12 N -0.61 -10.99 2.98 -178.76 -0.53 -11.53 16 13 C 0.71 13.18 8.26 -86.92 -0.72 12.46 16 14 O -0.57 -11.46 12.93 5.29 0.07 -11.39 16 15 N -0.66 -11.11 5.26 -15.65 -0.08 -11.19 16 16 C 0.36 6.00 7.57 -152.38 -1.15 4.85 16 17 C -0.29 -4.45 9.65 -39.76 -0.38 -4.83 16 18 C 0.08 1.07 12.00 -17.38 -0.21 0.86 16 19 N -0.29 -4.20 12.09 30.61 0.37 -3.83 16 20 N -0.35 -5.33 3.79 -11.25 -0.04 -5.37 16 21 C 0.37 5.13 7.39 -154.41 -1.14 3.99 16 22 C -0.16 -1.75 9.74 -39.25 -0.38 -2.13 16 23 C -0.05 -0.40 10.17 -39.31 -0.40 -0.80 16 24 C -0.19 -1.41 10.11 -39.41 -0.40 -1.81 16 25 C 0.14 1.32 11.18 -17.57 -0.20 1.13 16 26 N -0.52 -6.78 8.16 -12.30 -0.10 -6.88 16 27 C 0.11 1.89 6.40 -3.93 -0.03 1.87 16 28 C -0.12 -2.66 5.14 -26.83 -0.14 -2.80 16 29 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 30 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 32 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 33 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.08 1.44 7.03 -51.93 -0.37 1.08 16 35 H 0.42 6.72 4.26 -40.82 -0.17 6.55 16 36 H 0.18 3.01 5.84 -52.49 -0.31 2.70 16 37 H 0.19 1.60 8.06 -52.49 -0.42 1.17 16 38 H 0.15 1.48 7.91 -52.49 -0.41 1.06 16 39 H 0.14 0.68 8.06 -52.49 -0.42 0.26 16 40 H 0.14 0.66 8.06 -52.48 -0.42 0.24 16 41 H 0.17 1.19 8.06 -52.48 -0.42 0.77 16 42 H 0.06 0.88 5.57 -51.93 -0.29 0.59 16 43 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 44 H 0.11 2.52 6.03 -51.93 -0.31 2.21 16 45 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 366.40 15.07 5.52 5.52 Total: -1.00 -30.88 366.40 -10.71 -41.60 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: -5.63 Total: 9.52 kcal Atomic # 6 Polarization: 7.16 SS G_CDS: -5.89 Total: 1.27 kcal Atomic # 7 Polarization: -62.23 SS G_CDS: 0.24 Total: -61.99 kcal Atomic # 8 Polarization: -11.46 SS G_CDS: 0.07 Total: -11.39 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -30.88 -10.71 -41.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001466634668.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.279 kcal (2) G-P(sol) polarization free energy of solvation -30.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds