Wall clock time and date at job start Sat Apr 11 2020 06:21:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30741 * 1 3 3 Si 1.86803 * 119.99824 * 2 1 4 4 H 1.48498 * 109.47109 * 240.00102 * 3 2 1 5 5 H 1.48493 * 109.47225 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46518 * 120.00330 * 3 2 1 7 7 C 1.40027 * 120.00172 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99839 * 179.97438 * 7 2 1 9 9 C 1.41328 * 120.00303 * 359.97438 * 7 2 1 10 10 C 1.40610 * 119.79048 * 179.97438 * 9 7 2 11 11 C 1.38320 * 119.12815 * 180.02562 * 10 9 7 12 12 C 1.38683 * 118.66905 * 359.73550 * 11 10 9 13 13 C 1.39650 * 119.50035 * 0.54863 * 12 11 10 14 14 N 1.39250 * 119.57711 * 179.70873 * 13 12 11 15 15 C 1.34774 * 119.99738 * 185.40742 * 14 13 12 16 16 O 1.21570 * 120.00277 * 354.86276 * 15 14 13 17 17 N 1.34775 * 119.99764 * 174.85688 * 15 14 13 18 18 C 1.46496 * 120.00154 * 179.97438 * 17 15 14 19 19 C 1.53001 * 109.47375 * 180.02562 * 18 17 15 20 20 C 1.53004 * 109.47095 * 180.02562 * 19 18 17 21 21 N 1.46507 * 109.46824 * 180.02562 * 20 19 18 22 22 C 1.38995 * 119.99699 * 180.02562 * 21 20 19 23 23 C 1.39144 * 119.70831 * 359.97438 * 22 21 20 24 24 C 1.38300 * 119.09796 * 180.02562 * 23 22 21 25 25 C 1.38882 * 118.50429 * 0.02562 * 24 23 22 26 26 C 1.38028 * 119.33063 * 0.27299 * 25 24 23 27 27 N 1.31973 * 120.85479 * 359.45037 * 26 25 24 28 28 N 1.31926 * 120.84621 * 359.43632 * 13 12 11 29 29 H 0.96993 * 120.00156 * 359.97438 * 1 2 3 30 30 H 1.07998 * 120.43499 * 359.97438 * 10 9 7 31 31 H 1.07998 * 120.65849 * 180.02562 * 11 10 9 32 32 H 1.08002 * 120.25303 * 180.27785 * 12 11 10 33 33 H 0.97000 * 119.99872 * 5.40918 * 14 13 12 34 34 H 0.97004 * 120.00033 * 0.02562 * 17 15 14 35 35 H 1.09001 * 109.46907 * 60.00401 * 18 17 15 36 36 H 1.08997 * 109.47272 * 300.00419 * 18 17 15 37 37 H 1.08993 * 109.47128 * 59.99919 * 19 18 17 38 38 H 1.09005 * 109.46916 * 300.00027 * 19 18 17 39 39 H 1.09001 * 109.47351 * 60.00058 * 20 19 18 40 40 H 1.08997 * 109.47108 * 299.99905 * 20 19 18 41 41 H 0.96994 * 119.99689 * 359.97438 * 21 20 19 42 42 H 1.07998 * 120.44800 * 0.02870 * 23 22 21 43 43 H 1.07993 * 120.74639 * 180.02562 * 24 23 22 44 44 H 1.07999 * 120.33400 * 179.97438 * 25 24 23 45 45 H 1.07995 * 119.56872 * 179.70226 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.0951 1.6965 -1.2125 5 1 1.2764 2.7464 0.0006 6 1 3.0952 1.6963 1.2125 7 6 2.0076 -1.2126 -0.0005 8 1 3.0877 -1.2126 -0.0010 9 6 1.3010 -2.4366 -0.0005 10 6 2.0086 -3.6517 -0.0016 11 6 1.3033 -4.8416 -0.0022 12 6 -0.0826 -4.7935 0.0040 13 6 -0.7278 -3.5549 -0.0011 14 7 -2.1194 -3.5048 -0.0010 15 6 -2.7509 -2.3197 -0.1159 16 8 -2.1092 -1.2873 -0.1255 17 7 -4.0940 -2.2793 -0.2202 18 6 -4.7806 -0.9912 -0.3445 19 6 -6.2893 -1.2250 -0.4453 20 6 -7.0063 0.1203 -0.5758 21 7 -8.4510 -0.1036 -0.6718 22 6 -9.3149 0.9778 -0.7988 23 6 -8.8011 2.2704 -0.8336 24 6 -9.6722 3.3372 -0.9598 25 6 -11.0333 3.0748 -1.0468 26 6 -11.4742 1.7677 -0.9994 27 7 -10.6195 0.7688 -0.8837 28 7 -0.0357 -2.4318 -0.0005 29 1 -0.4850 0.8400 0.0004 30 1 3.0886 -3.6559 -0.0029 31 1 1.8217 -5.7890 -0.0026 32 1 -0.6588 -5.7070 0.0083 33 1 -2.6341 -4.3228 0.0817 34 1 -4.6061 -3.1031 -0.2122 35 1 -4.4314 -0.4783 -1.2406 36 1 -4.5660 -0.3790 0.5314 37 1 -6.6382 -1.7377 0.4509 38 1 -6.5043 -1.8374 -1.3212 39 1 -6.6573 0.6326 -1.4723 40 1 -6.7914 0.7329 0.2997 41 1 -8.8044 -1.0066 -0.6474 42 1 -7.7366 2.4384 -0.7631 43 1 -9.3024 4.3514 -0.9901 44 1 -11.7398 3.8856 -1.1456 45 1 -12.5321 1.5596 -1.0618 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001467197104.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:06 Heat of formation + Delta-G solvation = 73.200076 kcal Electronic energy + Delta-G solvation = -27623.234398 eV Core-core repulsion = 23641.788999 eV Total energy + Delta-G solvation = -3981.445400 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.39012 -39.48245 -37.83698 -36.89650 -34.78446 -33.92703 -32.97061 -32.68542 -31.66596 -30.26401 -29.46737 -28.64414 -25.79114 -25.20861 -23.84700 -22.58868 -21.94442 -21.64112 -21.13082 -19.77386 -18.13262 -17.85530 -17.05014 -16.97997 -16.26898 -16.08923 -15.91533 -15.19172 -14.80959 -14.65888 -14.55549 -14.42024 -14.17280 -14.02725 -13.69093 -13.26720 -13.15701 -13.03083 -12.80668 -12.18989 -12.13956 -12.09242 -11.86496 -11.66000 -11.36102 -11.09841 -10.94575 -10.63869 -10.51186 -10.43772 -9.98287 -9.92695 -9.70364 -9.67285 -9.13188 -9.00162 -8.50662 -7.99669 -7.93020 -7.19345 -6.92415 -6.08715 -4.36790 1.04024 1.20983 2.75322 2.86999 3.15362 3.17842 3.20044 3.29331 3.29964 3.69248 4.08824 4.22134 4.37236 4.53800 4.59955 4.68136 4.79580 4.87189 4.92053 4.97746 4.99531 5.13848 5.27278 5.38956 5.49602 5.54263 5.76583 5.95909 5.97808 6.05243 6.07709 6.12661 6.29430 6.49676 6.62558 6.71906 6.81438 6.87097 6.94400 7.25494 7.27762 7.36997 7.64084 7.75582 7.83903 7.91987 8.19216 8.31530 8.66877 8.82196 9.08528 9.59500 10.29383 10.52201 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014037 B = 0.002031 C = 0.001778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1994.194934 B =13783.284104 C =15745.133349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.649 5.649 2 C 0.056 3.944 3 Si 0.895 3.105 4 H -0.267 1.267 5 H -0.279 1.279 6 H -0.267 1.267 7 C -0.425 4.425 8 H 0.081 0.919 9 C 0.271 3.729 10 C -0.307 4.307 11 C -0.036 4.036 12 C -0.359 4.359 13 C 0.386 3.614 14 N -0.673 5.673 15 C 0.663 3.337 16 O -0.462 6.462 17 N -0.761 5.761 18 C 0.150 3.850 19 C -0.141 4.141 20 C 0.130 3.870 21 N -0.725 5.725 22 C 0.403 3.597 23 C -0.239 4.239 24 C -0.034 4.034 25 C -0.240 4.240 26 C 0.147 3.853 27 N -0.549 5.549 28 N -0.471 5.471 29 H 0.272 0.728 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.090 0.910 33 H 0.394 0.606 34 H 0.384 0.616 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.404 0.596 42 H 0.133 0.867 43 H 0.131 0.869 44 H 0.129 0.871 45 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.444 2.863 -1.400 20.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.267 5.267 2 C -0.173 4.173 3 Si 0.719 3.281 4 H -0.192 1.192 5 H -0.204 1.204 6 H -0.192 1.192 7 C -0.456 4.456 8 H 0.100 0.900 9 C 0.146 3.854 10 C -0.330 4.330 11 C -0.060 4.060 12 C -0.385 4.385 13 C 0.146 3.854 14 N -0.322 5.322 15 C 0.361 3.639 16 O -0.325 6.325 17 N -0.422 5.422 18 C 0.024 3.976 19 C -0.179 4.179 20 C 0.005 3.995 21 N -0.357 5.357 22 C 0.167 3.833 23 C -0.264 4.264 24 C -0.060 4.060 25 C -0.263 4.263 26 C -0.011 4.011 27 N -0.267 5.267 28 N -0.190 5.190 29 H 0.084 0.916 30 H 0.114 0.886 31 H 0.113 0.887 32 H 0.108 0.892 33 H 0.227 0.773 34 H 0.216 0.784 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.240 0.760 42 H 0.151 0.849 43 H 0.149 0.851 44 H 0.147 0.853 45 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -20.531 4.107 -1.390 20.984 hybrid contribution 0.397 -0.524 0.020 0.658 sum -20.134 3.583 -1.370 20.496 Atomic orbital electron populations 1.70337 1.05579 1.27367 1.23462 1.26191 0.95151 1.00507 0.95463 0.86602 0.80203 0.81637 0.79616 1.19227 1.20445 1.19229 1.19538 0.94000 0.89399 1.42641 0.90047 1.18391 0.87171 0.91939 0.87912 1.21625 0.98532 0.93550 1.19291 1.20539 0.93117 0.96506 0.95822 1.20436 0.94767 0.94795 1.28508 1.18341 0.82445 0.90902 0.93668 1.42550 1.05249 1.07916 1.76463 1.16421 0.81286 0.85529 0.80652 1.91391 1.62279 1.29872 1.49001 1.45234 1.05906 1.08360 1.82668 1.20809 0.88600 0.85712 1.02456 1.21931 0.95437 0.97133 1.03396 1.21293 0.78412 0.97667 1.02088 1.44491 1.04679 1.06751 1.79796 1.18373 0.87680 0.87075 0.90139 1.21474 1.01353 0.91858 1.11737 1.21348 0.93087 0.98961 0.92571 1.21811 0.96422 0.98236 1.09801 1.22374 0.98533 0.87980 0.92210 1.67152 1.01761 1.36905 1.20849 1.68692 1.06848 1.23113 1.20323 0.91635 0.88604 0.88651 0.89186 0.77264 0.78369 0.91610 0.91619 0.90592 0.90593 0.91302 0.91307 0.76021 0.84947 0.85061 0.85289 0.82959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.65 -18.06 8.99 55.55 0.50 -17.57 16 2 C 0.06 1.49 5.50 -17.35 -0.10 1.40 16 3 Si 0.89 19.31 29.56 -169.99 -5.02 14.29 16 4 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 5 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 6 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 7 C -0.43 -11.78 9.14 -37.74 -0.34 -12.13 16 8 H 0.08 2.10 7.85 -52.48 -0.41 1.69 16 9 C 0.27 7.68 6.55 -84.99 -0.56 7.12 16 10 C -0.31 -7.78 9.83 -38.66 -0.38 -8.17 16 11 C -0.04 -0.81 10.15 -39.39 -0.40 -1.21 16 12 C -0.36 -8.10 9.95 -38.89 -0.39 -8.49 16 13 C 0.39 9.48 7.43 -154.99 -1.15 8.33 16 14 N -0.67 -13.24 5.39 -15.79 -0.09 -13.33 16 15 C 0.66 13.32 8.52 -86.92 -0.74 12.58 16 16 O -0.46 -11.65 12.11 5.30 0.06 -11.58 16 17 N -0.76 -10.49 5.56 -65.23 -0.36 -10.85 16 18 C 0.15 1.78 5.67 -4.04 -0.02 1.76 16 19 C -0.14 -1.09 5.44 -26.73 -0.15 -1.23 16 20 C 0.13 1.02 4.89 -4.04 -0.02 1.00 16 21 N -0.72 -6.35 5.73 -60.41 -0.35 -6.70 16 22 C 0.40 4.20 7.65 -155.03 -1.19 3.02 16 23 C -0.24 -2.23 9.33 -39.22 -0.37 -2.60 16 24 C -0.03 -0.27 10.17 -39.32 -0.40 -0.67 16 25 C -0.24 -1.84 10.10 -39.42 -0.40 -2.24 16 26 C 0.15 1.27 11.17 -17.57 -0.20 1.08 16 27 N -0.55 -6.00 10.39 -12.44 -0.13 -6.13 16 28 N -0.47 -13.33 5.74 -10.26 -0.06 -13.38 16 29 H 0.27 7.11 8.29 -40.82 -0.34 6.77 16 30 H 0.10 2.25 8.06 -52.49 -0.42 1.83 16 31 H 0.10 1.84 8.06 -52.49 -0.42 1.42 16 32 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 33 H 0.39 5.90 8.71 -40.82 -0.36 5.54 16 34 H 0.38 3.95 8.49 -40.82 -0.35 3.60 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.07 0.54 7.93 -51.93 -0.41 0.13 16 40 H 0.07 0.54 7.93 -51.93 -0.41 0.13 16 41 H 0.40 3.24 8.60 -40.82 -0.35 2.89 16 42 H 0.13 1.08 6.71 -52.49 -0.35 0.73 16 43 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 44 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 45 H 0.15 0.89 8.06 -52.49 -0.42 0.47 16 LS Contribution 381.70 15.07 5.75 5.75 Total: -1.00 -35.33 381.70 -12.48 -47.81 By element: Atomic # 1 Polarization: 18.15 SS G_CDS: -6.00 Total: 12.15 kcal Atomic # 6 Polarization: 6.34 SS G_CDS: -6.79 Total: -0.45 kcal Atomic # 7 Polarization: -67.48 SS G_CDS: -0.48 Total: -67.96 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: 0.06 Total: -11.58 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -5.02 Total: 14.29 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -35.33 -12.48 -47.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001467197104.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.011 kcal (2) G-P(sol) polarization free energy of solvation -35.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.811 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds