Wall clock time and date at job start Sat Apr 11 2020 06:21:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86798 * 120.00021 * 2 1 4 4 H 1.48502 * 109.47046 * 270.00018 * 3 2 1 5 5 H 1.48496 * 109.47191 * 29.99974 * 3 2 1 6 6 H 1.48500 * 109.47304 * 150.00042 * 3 2 1 7 7 C 1.38817 * 120.00059 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99714 * 180.02562 * 7 2 1 9 9 N 1.36928 * 120.00130 * 359.97438 * 7 2 1 10 10 C 1.46504 * 120.00268 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47258 * 180.02562 * 10 9 7 12 12 H 1.09003 * 109.50222 * 55.06376 * 11 10 9 13 13 C 1.53037 * 109.52420 * 175.14376 * 11 10 9 14 14 C 1.53047 * 109.54009 * 181.32937 * 13 11 10 15 15 C 1.53620 * 109.24179 * 298.51432 * 14 13 11 16 16 N 1.46925 * 108.54677 * 54.85191 * 15 14 13 17 17 C 1.34774 * 120.63275 * 126.36670 * 16 15 14 18 18 O 1.21553 * 120.00626 * 185.57412 * 17 16 15 19 19 C 1.47848 * 119.99921 * 5.57263 * 17 16 15 20 20 C 1.40601 * 120.27878 * 41.55541 * 19 17 16 21 21 N 1.30814 * 121.52170 * 180.02562 * 20 19 17 22 22 C 1.33754 * 121.79771 * 0.02562 * 21 20 19 23 23 N 1.33895 * 120.62394 * 179.97438 * 22 21 20 24 24 C 1.31334 * 119.84789 * 180.02562 * 23 22 21 25 25 C 1.39764 * 120.77956 * 0.02726 * 24 23 22 26 26 N 1.31315 * 120.55001 * 359.97438 * 25 24 23 27 27 C 1.33661 * 119.70574 * 359.73076 * 26 25 24 28 28 C 1.38906 * 120.27962 * 221.57898 * 19 17 16 29 29 C 1.46933 * 118.74037 * 306.09727 * 16 15 14 30 30 H 0.96998 * 119.99772 * 0.02562 * 1 2 3 31 31 H 0.97003 * 119.99893 * 0.02562 * 9 7 2 32 32 H 1.09001 * 109.46947 * 60.00015 * 10 9 7 33 33 H 1.09000 * 109.46671 * 300.00390 * 10 9 7 34 34 H 1.08996 * 109.46488 * 301.35407 * 13 11 10 35 35 H 1.09000 * 109.46239 * 61.32966 * 13 11 10 36 36 H 1.09007 * 109.49435 * 58.58457 * 14 13 11 37 37 H 1.09000 * 109.49969 * 178.65055 * 14 13 11 38 38 H 1.08996 * 109.74217 * 295.11781 * 15 14 13 39 39 H 1.09000 * 109.66416 * 174.54677 * 15 14 13 40 40 H 1.07999 * 119.23580 * 0.04923 * 20 19 17 41 41 H 1.07998 * 119.60974 * 179.97438 * 24 23 22 42 42 H 1.07990 * 119.72640 * 179.97438 * 25 24 23 43 43 H 1.07993 * 121.00051 * 359.95804 * 28 19 17 44 44 H 1.08994 * 109.58544 * 173.64082 * 29 16 15 45 45 H 1.08999 * 109.58106 * 293.92548 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 2.0582 -3.6568 -0.0005 11 6 1.0640 -4.8197 -0.0012 12 1 0.3806 -4.7138 -0.8437 13 6 1.8241 -6.1424 -0.1233 14 6 0.8280 -7.3039 -0.1573 15 6 0.0296 -7.3248 1.1549 16 7 -0.5884 -6.0057 1.3470 17 6 -1.9143 -5.8932 1.5610 18 8 -2.4298 -4.7939 1.6174 19 6 -2.7419 -7.1071 1.7271 20 6 -2.2703 -8.1872 2.4938 21 7 -2.9818 -9.2728 2.6564 22 6 -4.1916 -9.4119 2.1031 23 7 -4.8996 -10.5338 2.2845 24 6 -6.0857 -10.6544 1.7337 25 6 -6.6217 -9.6237 0.9567 26 7 -5.9473 -8.5136 0.7636 27 6 -4.7407 -8.3664 1.3194 28 6 -3.9917 -7.1902 1.1267 29 6 0.2674 -4.8120 1.3074 30 1 -0.4850 0.8400 -0.0004 31 1 0.3556 -2.3881 -0.0005 32 1 2.6848 -3.7145 0.8895 33 1 2.6849 -3.7144 -0.8905 34 1 2.4112 -6.1404 -1.0416 35 1 2.4889 -6.2595 0.7325 36 1 0.1468 -7.1744 -0.9984 37 1 1.3688 -8.2437 -0.2684 38 1 0.6976 -7.5401 1.9889 39 1 -0.7469 -8.0876 1.0997 40 1 -1.2982 -8.1188 2.9594 41 1 -6.6533 -11.5612 1.8822 42 1 -7.5984 -9.7411 0.5114 43 1 -4.3788 -6.3755 0.5328 44 1 -0.3524 -3.9165 1.3526 45 1 0.9526 -4.8254 2.1549 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480285967.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:09 Heat of formation + Delta-G solvation = 70.953194 kcal Electronic energy + Delta-G solvation = -28893.221041 eV Core-core repulsion = 24911.678209 eV Total energy + Delta-G solvation = -3981.542832 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.17225 -40.49185 -38.58797 -37.61125 -35.46755 -35.01711 -33.12596 -32.38003 -31.80666 -31.54716 -29.74649 -26.97345 -25.99412 -25.47616 -24.80556 -23.39294 -23.08894 -21.73028 -21.04124 -19.91623 -19.35287 -18.38754 -18.19202 -17.06666 -16.66964 -16.20262 -15.92585 -15.69067 -15.42357 -15.02639 -14.77665 -14.61953 -14.28457 -13.83649 -13.67675 -13.55154 -13.28704 -13.25029 -13.05703 -12.92043 -12.59561 -12.37635 -12.28234 -12.20335 -11.53808 -11.23477 -11.16712 -11.04123 -10.85066 -10.69235 -10.44083 -10.35094 -10.11657 -9.95196 -9.78605 -9.62948 -9.54541 -9.22257 -8.86028 -8.65321 -6.89225 -5.71512 -3.01443 -0.53088 -0.24634 1.29648 1.96421 2.59775 2.83146 3.02079 3.46203 3.48290 3.49758 3.50871 3.53211 3.55398 4.04159 4.09743 4.20082 4.37920 4.52455 4.57643 4.65270 4.75696 4.80760 4.87268 5.01205 5.14054 5.22730 5.31629 5.33128 5.43136 5.57895 5.61464 5.72592 5.78924 5.82159 5.89503 6.04450 6.07799 6.16580 6.34401 6.42940 6.47705 6.52721 6.74435 6.85221 6.94208 7.27056 7.39214 7.73102 8.00155 8.46166 9.57254 10.14763 10.48839 11.50745 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.019020 B = 0.002370 C = 0.002184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.792622 B =11813.282532 C =12818.352204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.013 4.013 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.242 4.242 8 H 0.070 0.930 9 N -0.733 5.733 10 C 0.161 3.839 11 C -0.107 4.107 12 H 0.075 0.925 13 C -0.113 4.113 14 C -0.133 4.133 15 C 0.097 3.903 16 N -0.602 5.602 17 C 0.559 3.441 18 O -0.510 6.510 19 C -0.166 4.166 20 C 0.191 3.809 21 N -0.456 5.456 22 C 0.269 3.731 23 N -0.418 5.418 24 C 0.111 3.889 25 C 0.073 3.927 26 N -0.404 5.404 27 C 0.023 3.977 28 C 0.030 3.970 29 C 0.120 3.880 30 H 0.255 0.745 31 H 0.385 0.615 32 H 0.021 0.979 33 H 0.022 0.978 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.181 0.819 41 H 0.185 0.815 42 H 0.184 0.816 43 H 0.164 0.836 44 H 0.106 0.894 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.748 -26.155 2.456 27.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.209 4.209 3 Si 0.737 3.263 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.374 4.374 8 H 0.088 0.912 9 N -0.378 5.378 10 C 0.032 3.968 11 C -0.127 4.127 12 H 0.093 0.907 13 C -0.151 4.151 14 C -0.171 4.171 15 C -0.026 4.026 16 N -0.335 5.335 17 C 0.344 3.656 18 O -0.385 6.385 19 C -0.174 4.174 20 C 0.013 3.987 21 N -0.165 5.165 22 C 0.029 3.971 23 N -0.133 5.133 24 C -0.068 4.068 25 C -0.104 4.104 26 N -0.119 5.119 27 C -0.104 4.104 28 C 0.002 3.998 29 C -0.001 4.001 30 H 0.065 0.935 31 H 0.219 0.781 32 H 0.038 0.962 33 H 0.040 0.960 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.093 0.907 38 H 0.096 0.904 39 H 0.098 0.902 40 H 0.197 0.803 41 H 0.202 0.798 42 H 0.201 0.799 43 H 0.182 0.818 44 H 0.125 0.875 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -8.443 -26.046 3.037 27.548 hybrid contribution -0.235 1.493 -0.554 1.610 sum -8.677 -24.553 2.483 26.159 Atomic orbital electron populations 1.69671 1.05060 1.25666 1.57365 1.24763 0.95501 0.97694 1.02972 0.86206 0.78627 0.83972 0.77458 1.21780 1.21785 1.20790 1.19195 0.90967 0.84157 1.43032 0.91218 1.42417 1.05946 0.99942 1.89510 1.20632 0.92929 0.85106 0.98087 1.21694 0.98011 0.95226 0.97760 0.90676 1.21533 0.97439 0.93569 1.02540 1.21984 0.98628 0.99405 0.97085 1.22156 0.97444 0.84260 0.98754 1.48095 1.06454 1.08570 1.70359 1.17886 0.81941 0.87858 0.77893 1.90916 1.71580 1.26664 1.49291 1.21212 0.96617 0.97241 1.02314 1.23473 0.98347 0.85776 0.91070 1.67514 1.04514 1.24271 1.20175 1.20081 0.92536 0.90482 0.93993 1.68340 1.05965 1.20983 1.17986 1.24344 0.91218 0.99995 0.91282 1.24260 1.00896 0.89303 0.95912 1.68629 1.04441 1.22573 1.16238 1.20183 0.94094 0.96546 0.99539 1.21757 0.90077 0.95051 0.92878 1.21839 0.93212 0.87452 0.97576 0.93466 0.78079 0.96166 0.96018 0.91353 0.91554 0.91444 0.90660 0.90423 0.90176 0.80262 0.79806 0.79910 0.81838 0.87533 0.91009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.80 13.06 55.49 0.72 -28.08 16 2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 3 Si 0.91 22.71 29.55 -169.99 -5.02 17.69 16 4 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 5 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 6 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 7 C -0.24 -6.83 9.99 -15.06 -0.15 -6.98 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.48 16 9 N -0.73 -18.58 5.38 -59.91 -0.32 -18.90 16 10 C 0.16 3.11 5.66 -4.04 -0.02 3.09 16 11 C -0.11 -1.65 2.37 -90.50 -0.21 -1.86 16 12 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 13 C -0.11 -1.26 5.17 -26.69 -0.14 -1.40 16 14 C -0.13 -1.21 6.10 -26.38 -0.16 -1.37 16 15 C 0.10 0.86 4.95 -3.49 -0.02 0.84 16 16 N -0.60 -7.69 2.97 -173.61 -0.51 -8.20 16 17 C 0.56 8.07 7.31 -12.33 -0.09 7.98 16 18 O -0.51 -9.76 16.37 5.32 0.09 -9.67 16 19 C -0.17 -1.94 5.08 -104.83 -0.53 -2.48 16 20 C 0.19 1.92 8.54 -17.09 -0.15 1.77 16 21 N -0.46 -5.39 10.39 -12.27 -0.13 -5.52 16 22 C 0.27 3.21 7.60 -157.60 -1.20 2.01 16 23 N -0.42 -4.41 10.55 -12.38 -0.13 -4.54 16 24 C 0.11 0.68 11.21 -17.19 -0.19 0.49 16 25 C 0.07 0.45 11.22 -17.20 -0.19 0.26 16 26 N -0.40 -4.10 10.46 -10.77 -0.11 -4.21 16 27 C 0.02 0.26 6.59 -84.78 -0.56 -0.30 16 28 C 0.03 0.35 9.77 -38.38 -0.37 -0.02 16 29 C 0.12 1.87 5.52 -3.70 -0.02 1.85 16 30 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 31 H 0.39 10.45 6.89 -40.82 -0.28 10.17 16 32 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.08 0.54 8.13 -51.93 -0.42 0.12 16 39 H 0.08 0.63 4.79 -51.93 -0.25 0.38 16 40 H 0.18 1.32 6.69 -52.49 -0.35 0.96 16 41 H 0.19 0.28 8.06 -52.49 -0.42 -0.14 16 42 H 0.18 0.33 8.06 -52.49 -0.42 -0.09 16 43 H 0.16 1.90 8.06 -52.49 -0.42 1.48 16 44 H 0.11 2.12 6.20 -51.93 -0.32 1.79 16 45 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 LS Contribution 370.78 15.07 5.59 5.59 Total: -1.00 -37.04 370.78 -9.76 -46.80 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: -5.82 Total: 5.64 kcal Atomic # 6 Polarization: 7.51 SS G_CDS: -4.11 Total: 3.40 kcal Atomic # 7 Polarization: -68.97 SS G_CDS: -0.48 Total: -69.45 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: 0.09 Total: -9.67 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.02 Total: 17.69 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -37.04 -9.76 -46.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480285967.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.753 kcal (2) G-P(sol) polarization free energy of solvation -37.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds