Wall clock time and date at job start Sat Apr 11 2020 06:21:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86798 * 120.00021 * 2 1 4 4 H 1.48502 * 109.47046 * 270.00018 * 3 2 1 5 5 H 1.48496 * 109.47191 * 29.99974 * 3 2 1 6 6 H 1.48500 * 109.47304 * 150.00042 * 3 2 1 7 7 C 1.38817 * 120.00059 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99714 * 180.02562 * 7 2 1 9 9 N 1.36928 * 120.00130 * 359.97438 * 7 2 1 10 10 C 1.46504 * 120.00268 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47258 * 180.02562 * 10 9 7 12 12 H 1.09003 * 109.50222 * 55.06376 * 11 10 9 13 13 C 1.53037 * 109.52420 * 175.14376 * 11 10 9 14 14 C 1.53047 * 109.54009 * 181.32937 * 13 11 10 15 15 C 1.53620 * 109.24179 * 298.51432 * 14 13 11 16 16 N 1.46925 * 108.54677 * 54.85191 * 15 14 13 17 17 C 1.34774 * 120.63275 * 126.36670 * 16 15 14 18 18 O 1.21553 * 120.00626 * 185.57412 * 17 16 15 19 19 C 1.47848 * 119.99921 * 5.57263 * 17 16 15 20 20 C 1.40601 * 120.27878 * 41.55541 * 19 17 16 21 21 N 1.30814 * 121.52170 * 180.02562 * 20 19 17 22 22 C 1.33754 * 121.79771 * 0.02562 * 21 20 19 23 23 N 1.33895 * 120.62394 * 179.97438 * 22 21 20 24 24 C 1.31334 * 119.84789 * 180.02562 * 23 22 21 25 25 C 1.39764 * 120.77956 * 0.02726 * 24 23 22 26 26 N 1.31315 * 120.55001 * 359.97438 * 25 24 23 27 27 C 1.33661 * 119.70574 * 359.73076 * 26 25 24 28 28 C 1.38906 * 120.27962 * 221.57898 * 19 17 16 29 29 C 1.46933 * 118.74037 * 306.09727 * 16 15 14 30 30 H 0.96998 * 119.99772 * 0.02562 * 1 2 3 31 31 H 0.97003 * 119.99893 * 0.02562 * 9 7 2 32 32 H 1.09001 * 109.46947 * 60.00015 * 10 9 7 33 33 H 1.09000 * 109.46671 * 300.00390 * 10 9 7 34 34 H 1.08996 * 109.46488 * 301.35407 * 13 11 10 35 35 H 1.09000 * 109.46239 * 61.32966 * 13 11 10 36 36 H 1.09007 * 109.49435 * 58.58457 * 14 13 11 37 37 H 1.09000 * 109.49969 * 178.65055 * 14 13 11 38 38 H 1.08996 * 109.74217 * 295.11781 * 15 14 13 39 39 H 1.09000 * 109.66416 * 174.54677 * 15 14 13 40 40 H 1.07999 * 119.23580 * 0.04923 * 20 19 17 41 41 H 1.07998 * 119.60974 * 179.97438 * 24 23 22 42 42 H 1.07990 * 119.72640 * 179.97438 * 25 24 23 43 43 H 1.07993 * 121.00051 * 359.95804 * 28 19 17 44 44 H 1.08994 * 109.58544 * 173.64082 * 29 16 15 45 45 H 1.08999 * 109.58106 * 293.92548 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 2.0582 -3.6568 -0.0005 11 6 1.0640 -4.8197 -0.0012 12 1 0.3806 -4.7138 -0.8437 13 6 1.8241 -6.1424 -0.1233 14 6 0.8280 -7.3039 -0.1573 15 6 0.0296 -7.3248 1.1549 16 7 -0.5884 -6.0057 1.3470 17 6 -1.9143 -5.8932 1.5610 18 8 -2.4298 -4.7939 1.6174 19 6 -2.7419 -7.1071 1.7271 20 6 -2.2703 -8.1872 2.4938 21 7 -2.9818 -9.2728 2.6564 22 6 -4.1916 -9.4119 2.1031 23 7 -4.8996 -10.5338 2.2845 24 6 -6.0857 -10.6544 1.7337 25 6 -6.6217 -9.6237 0.9567 26 7 -5.9473 -8.5136 0.7636 27 6 -4.7407 -8.3664 1.3194 28 6 -3.9917 -7.1902 1.1267 29 6 0.2674 -4.8120 1.3074 30 1 -0.4850 0.8400 -0.0004 31 1 0.3556 -2.3881 -0.0005 32 1 2.6848 -3.7145 0.8895 33 1 2.6849 -3.7144 -0.8905 34 1 2.4112 -6.1404 -1.0416 35 1 2.4889 -6.2595 0.7325 36 1 0.1468 -7.1744 -0.9984 37 1 1.3688 -8.2437 -0.2684 38 1 0.6976 -7.5401 1.9889 39 1 -0.7469 -8.0876 1.0997 40 1 -1.2982 -8.1188 2.9594 41 1 -6.6533 -11.5612 1.8822 42 1 -7.5984 -9.7411 0.5114 43 1 -4.3788 -6.3755 0.5328 44 1 -0.3524 -3.9165 1.3526 45 1 0.9526 -4.8254 2.1549 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480285967.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:08 Heat of formation + Delta-G solvation = 43.210872 kcal Electronic energy + Delta-G solvation = -28894.424039 eV Core-core repulsion = 24911.678209 eV Total energy + Delta-G solvation = -3982.745829 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.91489 -41.51613 -39.44939 -38.77491 -36.65513 -36.18340 -34.61120 -33.22579 -33.11384 -32.45651 -31.32483 -27.97482 -27.07615 -26.69098 -25.68830 -24.89941 -24.06189 -22.83417 -22.21337 -20.98214 -20.22354 -19.23875 -19.15680 -18.92607 -17.58277 -17.23156 -16.75844 -16.69433 -16.51168 -16.20849 -15.95279 -15.61762 -15.40410 -15.30052 -15.09912 -14.62050 -14.31796 -14.23624 -14.11884 -14.00683 -13.84675 -13.66182 -13.09923 -13.02479 -12.88099 -12.86726 -12.64035 -12.19076 -12.13902 -12.04969 -11.93137 -11.81040 -11.57148 -11.33437 -11.15273 -10.95300 -10.62953 -10.29991 -9.95416 -9.75257 -9.00398 -7.94270 -5.24412 -1.26857 -0.95189 0.52337 1.18066 1.45480 1.48213 1.56742 1.58588 1.83840 2.34799 2.55705 2.76391 2.78062 2.84964 3.20534 3.34392 3.38881 3.51364 3.67461 3.74330 3.86128 3.90090 3.91924 4.04800 4.14912 4.26028 4.30066 4.31642 4.42123 4.54159 4.57898 4.74295 4.76410 4.78947 4.86588 4.90899 5.05487 5.11144 5.20790 5.22338 5.35292 5.40913 5.47746 5.52244 5.77459 6.19799 6.26505 6.28769 6.67862 6.89041 7.32093 8.09345 8.30615 9.29235 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.019020 B = 0.002370 C = 0.002184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.792622 B =11813.282532 C =12818.352204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.082 4.082 3 Si 0.976 3.024 4 H -0.287 1.287 5 H -0.298 1.298 6 H -0.265 1.265 7 C -0.243 4.243 8 H 0.081 0.919 9 N -0.749 5.749 10 C 0.158 3.842 11 C -0.095 4.095 12 H 0.049 0.951 13 C -0.105 4.105 14 C -0.128 4.128 15 C 0.090 3.910 16 N -0.594 5.594 17 C 0.558 3.442 18 O -0.572 6.572 19 C -0.170 4.170 20 C 0.198 3.802 21 N -0.469 5.469 22 C 0.253 3.747 23 N -0.452 5.452 24 C 0.133 3.867 25 C 0.092 3.908 26 N -0.439 5.439 27 C 0.007 3.993 28 C 0.021 3.979 29 C 0.127 3.873 30 H 0.249 0.751 31 H 0.370 0.630 32 H 0.032 0.968 33 H 0.026 0.974 34 H 0.075 0.925 35 H 0.086 0.914 36 H 0.052 0.948 37 H 0.112 0.888 38 H 0.111 0.889 39 H 0.095 0.905 40 H 0.208 0.792 41 H 0.238 0.762 42 H 0.233 0.767 43 H 0.151 0.849 44 H 0.054 0.946 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.152 -29.879 2.732 31.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.273 4.273 3 Si 0.805 3.195 4 H -0.214 1.214 5 H -0.225 1.225 6 H -0.190 1.190 7 C -0.375 4.375 8 H 0.098 0.902 9 N -0.392 5.392 10 C 0.031 3.969 11 C -0.115 4.115 12 H 0.067 0.933 13 C -0.143 4.143 14 C -0.166 4.166 15 C -0.031 4.031 16 N -0.325 5.325 17 C 0.345 3.655 18 O -0.452 6.452 19 C -0.177 4.177 20 C 0.022 3.978 21 N -0.178 5.178 22 C 0.014 3.986 23 N -0.167 5.167 24 C -0.046 4.046 25 C -0.085 4.085 26 N -0.154 5.154 27 C -0.117 4.117 28 C -0.007 4.007 29 C 0.005 3.995 30 H 0.058 0.942 31 H 0.202 0.798 32 H 0.050 0.950 33 H 0.044 0.956 34 H 0.093 0.907 35 H 0.105 0.895 36 H 0.071 0.929 37 H 0.130 0.870 38 H 0.129 0.871 39 H 0.113 0.887 40 H 0.225 0.775 41 H 0.254 0.746 42 H 0.249 0.751 43 H 0.169 0.831 44 H 0.072 0.928 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -7.739 -29.827 3.308 30.992 hybrid contribution -0.591 2.438 -0.692 2.602 sum -8.330 -27.389 2.616 28.747 Atomic orbital electron populations 1.69867 1.06881 1.25985 1.59630 1.25662 0.96341 1.01457 1.03877 0.85097 0.77732 0.79247 0.77430 1.21375 1.22503 1.18962 1.19676 0.91608 0.85289 1.40929 0.90159 1.42694 1.05562 1.01515 1.89402 1.20855 0.93584 0.84096 0.98362 1.21551 0.97037 0.96404 0.96517 0.93294 1.21513 0.97666 0.91335 1.03803 1.21986 0.98057 1.00035 0.96473 1.22554 0.98313 0.82087 1.00108 1.48131 1.05806 1.09426 1.69163 1.18316 0.82470 0.87901 0.76792 1.90882 1.72826 1.29158 1.52315 1.20918 0.96360 0.96648 1.03793 1.23741 0.99074 0.84638 0.90388 1.67566 1.04980 1.24651 1.20629 1.20295 0.92893 0.91141 0.94262 1.68440 1.07817 1.20634 1.19815 1.25315 0.89690 1.01268 0.88376 1.25193 1.01774 0.87604 0.93977 1.68674 1.04390 1.24787 1.17511 1.20116 0.94935 0.96235 1.00414 1.21751 0.90490 0.95335 0.93106 1.21531 0.92783 0.86920 0.98277 0.94180 0.79791 0.95032 0.95585 0.90675 0.89533 0.92865 0.86959 0.87057 0.88726 0.77541 0.74638 0.75117 0.83119 0.92762 0.89588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -63.05 13.06 21.65 0.28 -62.76 16 2 C -0.08 -4.87 5.50 84.86 0.47 -4.41 16 3 Si 0.98 47.65 29.55 68.60 2.03 49.68 16 4 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 5 H -0.30 -14.76 7.11 99.48 0.71 -14.05 16 6 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 7 C -0.24 -13.96 9.99 84.04 0.84 -13.12 16 8 H 0.08 4.34 7.83 -2.91 -0.02 4.32 16 9 N -0.75 -39.44 5.38 -343.45 -1.85 -41.28 16 10 C 0.16 6.16 5.66 86.38 0.49 6.64 16 11 C -0.10 -2.98 2.37 -10.72 -0.03 -3.00 16 12 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 13 C -0.11 -2.11 5.17 30.62 0.16 -1.95 16 14 C -0.13 -1.97 6.10 30.82 0.19 -1.78 16 15 C 0.09 1.40 4.95 86.51 0.43 1.83 16 16 N -0.59 -15.46 2.97 -821.47 -2.44 -17.90 16 17 C 0.56 17.30 7.31 86.79 0.63 17.93 16 18 O -0.57 -24.33 16.37 -3.88 -0.06 -24.39 16 19 C -0.17 -4.16 5.08 -20.00 -0.10 -4.27 16 20 C 0.20 3.87 8.54 85.42 0.73 4.60 16 21 N -0.47 -10.72 10.39 -192.74 -2.00 -12.73 16 22 C 0.25 5.85 7.60 134.96 1.03 6.88 16 23 N -0.45 -8.58 10.55 -193.09 -2.04 -10.61 16 24 C 0.13 1.13 11.21 85.14 0.95 2.08 16 25 C 0.09 0.83 11.22 85.14 0.96 1.78 16 26 N -0.44 -8.49 10.46 -187.98 -1.97 -10.45 16 27 C 0.01 0.17 6.59 40.35 0.27 0.44 16 28 C 0.02 0.53 9.77 23.05 0.23 0.76 16 29 C 0.13 4.13 5.52 86.36 0.48 4.61 16 30 H 0.25 15.70 8.31 -92.71 -0.77 14.93 16 31 H 0.37 21.49 6.89 -92.71 -0.64 20.85 16 32 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.05 1.00 8.14 -2.38 -0.02 0.98 16 37 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.11 1.08 8.13 -2.39 -0.02 1.06 16 39 H 0.09 1.27 4.79 -2.39 -0.01 1.26 16 40 H 0.21 2.62 6.69 -2.91 -0.02 2.60 16 41 H 0.24 -0.67 8.06 -2.91 -0.02 -0.69 16 42 H 0.23 -0.37 8.06 -2.92 -0.02 -0.39 16 43 H 0.15 4.04 8.06 -2.91 -0.02 4.02 16 44 H 0.05 2.37 6.20 -2.39 -0.01 2.35 16 45 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 Total: -1.00 -88.31 370.78 0.07 -88.24 By element: Atomic # 1 Polarization: 22.79 SS G_CDS: 0.40 Total: 23.19 kcal Atomic # 6 Polarization: 11.31 SS G_CDS: 7.71 Total: 19.02 kcal Atomic # 7 Polarization: -145.74 SS G_CDS: -10.01 Total: -155.74 kcal Atomic # 8 Polarization: -24.33 SS G_CDS: -0.06 Total: -24.39 kcal Atomic # 14 Polarization: 47.65 SS G_CDS: 2.03 Total: 49.68 kcal Total: -88.31 0.07 -88.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480285967.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.451 kcal (2) G-P(sol) polarization free energy of solvation -88.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds