Wall clock time and date at job start Sat Apr 11 2020 06:21:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86795 * 120.00450 * 2 1 4 4 H 1.48504 * 109.47198 * 269.99888 * 3 2 1 5 5 H 1.48500 * 109.47278 * 29.99649 * 3 2 1 6 6 H 1.48493 * 109.47619 * 149.99702 * 3 2 1 7 7 C 1.38813 * 119.99506 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00330 * 359.97438 * 7 2 1 9 9 N 1.36945 * 119.99774 * 180.02562 * 7 2 1 10 10 C 1.46503 * 119.99691 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.46576 * 179.97438 * 10 9 7 12 12 H 1.08995 * 109.50032 * 304.92874 * 11 10 9 13 13 C 1.53042 * 109.49260 * 184.83314 * 11 10 9 14 14 C 1.53040 * 109.53658 * 178.68242 * 13 11 10 15 15 C 1.52765 * 109.38183 * 61.24092 * 14 13 11 16 16 N 1.46922 * 109.01012 * 305.58769 * 15 14 13 17 17 C 1.34780 * 120.63138 * 233.58239 * 16 15 14 18 18 O 1.21556 * 119.99583 * 183.78343 * 17 16 15 19 19 C 1.47846 * 119.99900 * 3.51514 * 17 16 15 20 20 C 1.40596 * 120.27730 * 129.87762 * 19 17 16 21 21 N 1.30816 * 121.51576 * 179.97438 * 20 19 17 22 22 C 1.33758 * 121.80109 * 359.97216 * 21 20 19 23 23 N 1.33889 * 120.62421 * 180.02562 * 22 21 20 24 24 C 1.31325 * 119.85178 * 179.97438 * 23 22 21 25 25 C 1.39769 * 120.77514 * 0.02562 * 24 23 22 26 26 N 1.31307 * 120.55043 * 359.97438 * 25 24 23 27 27 C 1.33659 * 119.70760 * 0.02562 * 26 25 24 28 28 C 1.38904 * 120.27728 * 309.59679 * 19 17 16 29 29 C 1.46930 * 118.73540 * 53.30969 * 16 15 14 30 30 H 0.97001 * 119.99639 * 0.02562 * 1 2 3 31 31 H 0.96993 * 119.99930 * 359.97438 * 9 7 2 32 32 H 1.08994 * 109.47382 * 59.99345 * 10 9 7 33 33 H 1.09001 * 109.46974 * 299.99141 * 10 9 7 34 34 H 1.08988 * 109.46509 * 298.70207 * 13 11 10 35 35 H 1.08998 * 109.46134 * 58.68166 * 13 11 10 36 36 H 1.08993 * 109.50045 * 181.31800 * 14 13 11 37 37 H 1.09005 * 109.49823 * 301.38714 * 14 13 11 38 38 H 1.09004 * 109.50918 * 185.70283 * 15 14 13 39 39 H 1.08991 * 109.43114 * 65.42923 * 15 14 13 40 40 H 1.07992 * 119.24363 * 359.97434 * 20 19 17 41 41 H 1.08003 * 119.62009 * 180.02562 * 24 23 22 42 42 H 1.07997 * 119.71895 * 179.97438 * 25 24 23 43 43 H 1.08003 * 120.99834 * 0.02562 * 28 19 17 44 44 H 1.08994 * 109.58561 * 66.43451 * 29 16 15 45 45 H 1.09000 * 109.58441 * 186.71254 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5477 1.4401 0.7000 7 6 2.0101 -1.2022 0.0005 8 1 1.4701 -2.1375 0.0014 9 7 3.3795 -1.2023 0.0011 10 6 4.1119 -2.4711 0.0011 11 6 5.6162 -2.1915 0.0011 12 1 5.8664 -1.5467 -0.8413 13 6 6.3810 -3.5116 -0.1205 14 6 7.8850 -3.2305 -0.1536 15 6 8.3019 -2.5478 1.1478 16 7 7.4691 -1.3545 1.3504 17 6 8.0352 -0.1501 1.5639 18 8 7.3367 0.8167 1.7984 19 6 9.5059 -0.0062 1.5187 20 6 10.0955 1.0057 0.7407 21 7 11.3938 1.1553 0.6834 22 6 12.2260 0.3563 1.3604 23 7 13.5513 0.5310 1.2851 24 6 14.3543 -0.2620 1.9566 25 6 13.8426 -1.2911 2.7520 26 7 12.5468 -1.4832 2.8426 27 6 11.7106 -0.6882 2.1680 28 6 10.3165 -0.8658 2.2490 29 6 6.0074 -1.4981 1.3098 30 1 -0.4850 0.8401 -0.0004 31 1 3.8645 -0.3623 0.0007 32 1 3.8489 -3.0425 -0.8890 33 1 3.8483 -3.0428 0.8909 34 1 6.1489 -4.1459 0.7349 35 1 6.0863 -4.0187 -1.0392 36 1 8.4281 -4.1690 -0.2637 37 1 8.1144 -2.5765 -0.9949 38 1 9.3503 -2.2556 1.0859 39 1 8.1613 -3.2372 1.9801 40 1 9.4621 1.6748 0.1774 41 1 15.4228 -0.1175 1.8935 42 1 14.5186 -1.9335 3.2967 43 1 9.8902 -1.6491 2.8581 44 1 5.6758 -2.1001 2.1558 45 1 5.5421 -0.5136 1.3574 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480285968.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:11 Heat of formation + Delta-G solvation = 74.263566 kcal Electronic energy + Delta-G solvation = -29113.405016 eV Core-core repulsion = 25132.005732 eV Total energy + Delta-G solvation = -3981.399283 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -42.26828 -40.60850 -38.73664 -37.70205 -35.70795 -35.16987 -33.34281 -32.37251 -31.88069 -31.67644 -30.21445 -26.99477 -26.19763 -25.79345 -24.90035 -23.51699 -22.92904 -21.72757 -21.10893 -20.08863 -19.42189 -18.66244 -17.84727 -17.61171 -17.06785 -16.34083 -15.99053 -15.80081 -15.56215 -15.05508 -14.87340 -14.74483 -14.41842 -13.99308 -13.97287 -13.71230 -13.36001 -13.18694 -13.17885 -12.96670 -12.65192 -12.49858 -12.44011 -12.29894 -11.70858 -11.47341 -11.30826 -11.22014 -10.98571 -10.76668 -10.57179 -10.37794 -10.24149 -10.06096 -9.79773 -9.67781 -9.55206 -9.30402 -8.90928 -8.79691 -7.22212 -5.74769 -3.10808 -0.64714 -0.29434 1.17842 1.91982 2.41216 2.66793 2.97327 3.31024 3.43564 3.44629 3.45942 3.50012 3.52065 3.94874 4.03981 4.06438 4.30418 4.47888 4.51029 4.63345 4.65536 4.70237 4.77538 4.81831 4.98231 5.10360 5.15212 5.22309 5.31776 5.41326 5.54461 5.56780 5.65062 5.71194 5.78090 5.81522 5.92357 5.95438 6.19721 6.25372 6.33104 6.36228 6.61452 6.70320 6.85003 7.10359 7.35898 7.82924 8.00327 8.43971 9.22769 9.95481 10.14222 11.43362 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.019289 B = 0.002645 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.246056 B =10581.527529 C =11584.886982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.006 3.994 3 Si 0.880 3.120 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.272 1.272 7 C -0.246 4.246 8 H 0.090 0.910 9 N -0.757 5.757 10 C 0.165 3.835 11 C -0.112 4.112 12 H 0.075 0.925 13 C -0.112 4.112 14 C -0.134 4.134 15 C 0.095 3.905 16 N -0.599 5.599 17 C 0.560 3.440 18 O -0.514 6.514 19 C -0.158 4.158 20 C 0.210 3.790 21 N -0.453 5.453 22 C 0.269 3.731 23 N -0.417 5.417 24 C 0.112 3.888 25 C 0.074 3.926 26 N -0.407 5.407 27 C 0.021 3.979 28 C 0.005 3.995 29 C 0.118 3.882 30 H 0.259 0.741 31 H 0.362 0.638 32 H 0.032 0.968 33 H 0.029 0.971 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.076 0.924 37 H 0.067 0.933 38 H 0.081 0.919 39 H 0.077 0.923 40 H 0.183 0.817 41 H 0.185 0.815 42 H 0.184 0.816 43 H 0.161 0.839 44 H 0.075 0.925 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.949 -7.870 4.657 33.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.190 4.190 3 Si 0.710 3.290 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.198 1.198 7 C -0.376 4.376 8 H 0.108 0.892 9 N -0.403 5.403 10 C 0.037 3.963 11 C -0.131 4.131 12 H 0.093 0.907 13 C -0.150 4.150 14 C -0.172 4.172 15 C -0.027 4.027 16 N -0.332 5.332 17 C 0.345 3.655 18 O -0.389 6.389 19 C -0.166 4.166 20 C 0.032 3.968 21 N -0.162 5.162 22 C 0.030 3.970 23 N -0.132 5.132 24 C -0.068 4.068 25 C -0.103 4.103 26 N -0.121 5.121 27 C -0.105 4.105 28 C -0.023 4.023 29 C -0.003 4.003 30 H 0.069 0.931 31 H 0.195 0.805 32 H 0.050 0.950 33 H 0.047 0.953 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.095 0.905 37 H 0.086 0.914 38 H 0.100 0.900 39 H 0.095 0.905 40 H 0.200 0.800 41 H 0.202 0.798 42 H 0.201 0.799 43 H 0.179 0.821 44 H 0.093 0.907 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 31.544 -6.709 4.234 32.526 hybrid contribution 0.319 0.490 0.516 0.780 sum 31.863 -6.219 4.750 32.810 Atomic orbital electron populations 1.69702 1.05129 1.25862 1.57460 1.24664 0.95233 0.97244 1.01862 0.86609 0.79588 0.84916 0.77887 1.21097 1.21675 1.19804 1.19028 0.80579 0.94689 1.43262 0.89222 1.42766 1.04140 1.02183 1.91205 1.20611 0.87149 0.89502 0.98992 1.21764 0.97101 0.96730 0.97550 0.90655 1.21516 0.93485 0.97190 1.02826 1.21845 0.97442 1.00748 0.97205 1.21991 0.94894 0.87027 0.98817 1.48127 1.08157 1.06956 1.69944 1.17918 0.86197 0.83407 0.77955 1.90902 1.62734 1.37833 1.47466 1.21237 0.95461 0.98563 1.01319 1.23290 0.89706 0.92265 0.91499 1.67580 1.03660 1.24982 1.19937 1.20121 0.91734 0.91566 0.93598 1.68348 1.02004 1.24658 1.18152 1.24360 1.01671 0.90135 0.90634 1.24252 0.92343 0.97014 0.96674 1.68604 1.04108 1.23242 1.16194 1.20133 0.95227 0.96273 0.98904 1.21842 0.90106 0.95953 0.94410 1.21856 0.76899 1.03616 0.97934 0.93062 0.80526 0.95043 0.95309 0.91384 0.91083 0.90543 0.91438 0.90048 0.90505 0.79986 0.79781 0.79882 0.82148 0.90653 0.88109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.69 13.97 55.49 0.78 -28.92 16 2 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16 3 Si 0.88 22.85 27.74 -169.99 -4.71 18.14 16 4 H -0.28 -7.32 7.11 56.52 0.40 -6.92 16 5 H -0.29 -7.64 7.11 56.52 0.40 -7.24 16 6 H -0.27 -6.81 6.52 56.52 0.37 -6.44 16 7 C -0.25 -6.99 10.47 -15.06 -0.16 -7.15 16 8 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 9 N -0.76 -17.88 5.18 -59.90 -0.31 -18.19 16 10 C 0.17 3.02 5.65 -4.04 -0.02 2.99 16 11 C -0.11 -1.58 2.38 -90.50 -0.22 -1.79 16 12 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 13 C -0.11 -1.16 5.17 -26.69 -0.14 -1.29 16 14 C -0.13 -1.12 6.06 -26.83 -0.16 -1.28 16 15 C 0.10 0.80 5.36 -3.93 -0.02 0.78 16 16 N -0.60 -7.17 2.98 -174.14 -0.52 -7.69 16 17 C 0.56 7.49 7.25 -12.33 -0.09 7.40 16 18 O -0.51 -9.10 16.48 5.32 0.09 -9.01 16 19 C -0.16 -1.71 5.02 -104.83 -0.53 -2.24 16 20 C 0.21 2.30 10.87 -17.10 -0.19 2.12 16 21 N -0.45 -5.58 10.39 -12.28 -0.13 -5.71 16 22 C 0.27 3.09 7.60 -157.60 -1.20 1.89 16 23 N -0.42 -4.24 10.55 -12.39 -0.13 -4.37 16 24 C 0.11 0.60 11.21 -17.20 -0.19 0.41 16 25 C 0.07 0.36 11.22 -17.20 -0.19 0.17 16 26 N -0.41 -3.37 10.46 -10.77 -0.11 -3.48 16 27 C 0.02 0.21 6.59 -84.78 -0.56 -0.35 16 28 C 0.00 0.04 7.46 -38.38 -0.29 -0.24 16 29 C 0.12 1.71 5.51 -3.71 -0.02 1.69 16 30 H 0.26 7.87 8.31 -40.82 -0.34 7.53 16 31 H 0.36 8.53 4.76 -40.82 -0.19 8.34 16 32 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.65 8.14 -51.94 -0.42 0.23 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.08 0.60 4.56 -51.93 -0.24 0.37 16 39 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.18 1.74 8.06 -52.49 -0.42 1.32 16 41 H 0.19 0.17 8.06 -52.48 -0.42 -0.25 16 42 H 0.18 0.10 8.06 -52.49 -0.42 -0.33 16 43 H 0.16 1.19 7.10 -52.48 -0.37 0.82 16 44 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.10 1.83 6.23 -51.93 -0.32 1.51 16 LS Contribution 368.25 15.07 5.55 5.55 Total: -1.00 -37.65 368.25 -9.36 -47.00 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -5.79 Total: 3.48 kcal Atomic # 6 Polarization: 7.26 SS G_CDS: -4.06 Total: 3.19 kcal Atomic # 7 Polarization: -67.93 SS G_CDS: -0.42 Total: -68.36 kcal Atomic # 8 Polarization: -9.10 SS G_CDS: 0.09 Total: -9.01 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -4.71 Total: 18.14 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -37.65 -9.36 -47.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480285968.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.267 kcal (2) G-P(sol) polarization free energy of solvation -37.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.003 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds