Wall clock time and date at job start Sat Apr 11 2020 06:21:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86795 * 120.00450 * 2 1 4 4 H 1.48504 * 109.47198 * 269.99888 * 3 2 1 5 5 H 1.48500 * 109.47278 * 29.99649 * 3 2 1 6 6 H 1.48493 * 109.47619 * 149.99702 * 3 2 1 7 7 C 1.38813 * 119.99506 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00330 * 359.97438 * 7 2 1 9 9 N 1.36945 * 119.99774 * 180.02562 * 7 2 1 10 10 C 1.46503 * 119.99691 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.46576 * 179.97438 * 10 9 7 12 12 H 1.08995 * 109.50032 * 304.92874 * 11 10 9 13 13 C 1.53042 * 109.49260 * 184.83314 * 11 10 9 14 14 C 1.53040 * 109.53658 * 178.68242 * 13 11 10 15 15 C 1.52765 * 109.38183 * 61.24092 * 14 13 11 16 16 N 1.46922 * 109.01012 * 305.58769 * 15 14 13 17 17 C 1.34780 * 120.63138 * 233.58239 * 16 15 14 18 18 O 1.21556 * 119.99583 * 183.78343 * 17 16 15 19 19 C 1.47846 * 119.99900 * 3.51514 * 17 16 15 20 20 C 1.40596 * 120.27730 * 129.87762 * 19 17 16 21 21 N 1.30816 * 121.51576 * 179.97438 * 20 19 17 22 22 C 1.33758 * 121.80109 * 359.97216 * 21 20 19 23 23 N 1.33889 * 120.62421 * 180.02562 * 22 21 20 24 24 C 1.31325 * 119.85178 * 179.97438 * 23 22 21 25 25 C 1.39769 * 120.77514 * 0.02562 * 24 23 22 26 26 N 1.31307 * 120.55043 * 359.97438 * 25 24 23 27 27 C 1.33659 * 119.70760 * 0.02562 * 26 25 24 28 28 C 1.38904 * 120.27728 * 309.59679 * 19 17 16 29 29 C 1.46930 * 118.73540 * 53.30969 * 16 15 14 30 30 H 0.97001 * 119.99639 * 0.02562 * 1 2 3 31 31 H 0.96993 * 119.99930 * 359.97438 * 9 7 2 32 32 H 1.08994 * 109.47382 * 59.99345 * 10 9 7 33 33 H 1.09001 * 109.46974 * 299.99141 * 10 9 7 34 34 H 1.08988 * 109.46509 * 298.70207 * 13 11 10 35 35 H 1.08998 * 109.46134 * 58.68166 * 13 11 10 36 36 H 1.08993 * 109.50045 * 181.31800 * 14 13 11 37 37 H 1.09005 * 109.49823 * 301.38714 * 14 13 11 38 38 H 1.09004 * 109.50918 * 185.70283 * 15 14 13 39 39 H 1.08991 * 109.43114 * 65.42923 * 15 14 13 40 40 H 1.07992 * 119.24363 * 359.97434 * 20 19 17 41 41 H 1.08003 * 119.62009 * 180.02562 * 24 23 22 42 42 H 1.07997 * 119.71895 * 179.97438 * 25 24 23 43 43 H 1.08003 * 120.99834 * 0.02562 * 28 19 17 44 44 H 1.08994 * 109.58561 * 66.43451 * 29 16 15 45 45 H 1.09000 * 109.58441 * 186.71254 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5477 1.4401 0.7000 7 6 2.0101 -1.2022 0.0005 8 1 1.4701 -2.1375 0.0014 9 7 3.3795 -1.2023 0.0011 10 6 4.1119 -2.4711 0.0011 11 6 5.6162 -2.1915 0.0011 12 1 5.8664 -1.5467 -0.8413 13 6 6.3810 -3.5116 -0.1205 14 6 7.8850 -3.2305 -0.1536 15 6 8.3019 -2.5478 1.1478 16 7 7.4691 -1.3545 1.3504 17 6 8.0352 -0.1501 1.5639 18 8 7.3367 0.8167 1.7984 19 6 9.5059 -0.0062 1.5187 20 6 10.0955 1.0057 0.7407 21 7 11.3938 1.1553 0.6834 22 6 12.2260 0.3563 1.3604 23 7 13.5513 0.5310 1.2851 24 6 14.3543 -0.2620 1.9566 25 6 13.8426 -1.2911 2.7520 26 7 12.5468 -1.4832 2.8426 27 6 11.7106 -0.6882 2.1680 28 6 10.3165 -0.8658 2.2490 29 6 6.0074 -1.4981 1.3098 30 1 -0.4850 0.8401 -0.0004 31 1 3.8645 -0.3623 0.0007 32 1 3.8489 -3.0425 -0.8890 33 1 3.8483 -3.0428 0.8909 34 1 6.1489 -4.1459 0.7349 35 1 6.0863 -4.0187 -1.0392 36 1 8.4281 -4.1690 -0.2637 37 1 8.1144 -2.5765 -0.9949 38 1 9.3503 -2.2556 1.0859 39 1 8.1613 -3.2372 1.9801 40 1 9.4621 1.6748 0.1774 41 1 15.4228 -0.1175 1.8935 42 1 14.5186 -1.9335 3.2967 43 1 9.8902 -1.6491 2.8581 44 1 5.6758 -2.1001 2.1558 45 1 5.5421 -0.5136 1.3574 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480285968.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:11 Heat of formation + Delta-G solvation = 46.085738 kcal Electronic energy + Delta-G solvation = -29114.626898 eV Core-core repulsion = 25132.005732 eV Total energy + Delta-G solvation = -3982.621166 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.92153 -41.53178 -39.53115 -38.74652 -36.87346 -36.21675 -34.67787 -33.43603 -33.14701 -32.35993 -31.73298 -27.86796 -27.39482 -26.70016 -25.69087 -24.66265 -24.05153 -22.76873 -22.35614 -21.06592 -20.19974 -19.68746 -19.30430 -18.52568 -18.03414 -17.23844 -16.72307 -16.68287 -16.45392 -16.32724 -15.95411 -15.79475 -15.60767 -15.33333 -14.97114 -14.67373 -14.48099 -14.22734 -14.16480 -13.98689 -13.85081 -13.82520 -13.38691 -13.19462 -12.96765 -12.87066 -12.68445 -12.27093 -12.09251 -11.97204 -11.92138 -11.87349 -11.62731 -11.43301 -11.22567 -11.02177 -10.50437 -10.35568 -9.94452 -9.80600 -9.31162 -8.06145 -5.37921 -1.26225 -0.93059 0.53747 1.16252 1.33994 1.37340 1.43325 1.52368 1.78534 2.36463 2.43732 2.70345 2.80802 2.84520 3.22597 3.26103 3.34138 3.51069 3.53873 3.74032 3.76670 3.84310 3.94601 4.00648 4.05259 4.16209 4.21174 4.32286 4.36193 4.50298 4.53416 4.70116 4.73710 4.77603 4.80277 4.87224 5.02503 5.06278 5.17247 5.22540 5.30530 5.35721 5.46849 5.74073 5.78555 6.14176 6.18860 6.28667 6.71560 6.83145 7.05208 7.82805 7.98802 9.15345 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.019289 B = 0.002645 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.246056 B =10581.527529 C =11584.886982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.980 5.980 2 C -0.058 4.058 3 Si 0.944 3.056 4 H -0.278 1.278 5 H -0.294 1.294 6 H -0.263 1.263 7 C -0.229 4.229 8 H 0.064 0.936 9 N -0.762 5.762 10 C 0.160 3.840 11 C -0.099 4.099 12 H 0.062 0.938 13 C -0.106 4.106 14 C -0.128 4.128 15 C 0.091 3.909 16 N -0.593 5.593 17 C 0.561 3.439 18 O -0.569 6.569 19 C -0.167 4.167 20 C 0.200 3.800 21 N -0.481 5.481 22 C 0.247 3.753 23 N -0.461 5.461 24 C 0.132 3.868 25 C 0.095 3.905 26 N -0.425 5.425 27 C 0.010 3.990 28 C 0.021 3.979 29 C 0.122 3.878 30 H 0.258 0.742 31 H 0.362 0.638 32 H 0.034 0.966 33 H 0.034 0.966 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.109 0.891 37 H 0.058 0.942 38 H 0.095 0.905 39 H 0.102 0.898 40 H 0.182 0.818 41 H 0.233 0.767 42 H 0.236 0.764 43 H 0.181 0.819 44 H 0.084 0.916 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 36.717 -10.200 5.619 38.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.631 5.631 2 C -0.250 4.250 3 Si 0.772 3.228 4 H -0.205 1.205 5 H -0.221 1.221 6 H -0.188 1.188 7 C -0.360 4.360 8 H 0.082 0.918 9 N -0.408 5.408 10 C 0.034 3.966 11 C -0.119 4.119 12 H 0.081 0.919 13 C -0.144 4.144 14 C -0.166 4.166 15 C -0.030 4.030 16 N -0.324 5.324 17 C 0.348 3.652 18 O -0.448 6.448 19 C -0.175 4.175 20 C 0.024 3.976 21 N -0.190 5.190 22 C 0.009 3.991 23 N -0.176 5.176 24 C -0.048 4.048 25 C -0.083 4.083 26 N -0.140 5.140 27 C -0.115 4.115 28 C -0.006 4.006 29 C -0.001 4.001 30 H 0.067 0.933 31 H 0.195 0.805 32 H 0.052 0.948 33 H 0.052 0.948 34 H 0.101 0.899 35 H 0.096 0.904 36 H 0.127 0.873 37 H 0.077 0.923 38 H 0.113 0.887 39 H 0.120 0.880 40 H 0.199 0.801 41 H 0.249 0.751 42 H 0.252 0.748 43 H 0.198 0.802 44 H 0.102 0.898 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 36.337 -9.097 5.173 37.814 hybrid contribution -0.889 1.024 0.284 1.386 sum 35.447 -8.073 5.457 36.762 Atomic orbital electron populations 1.69851 1.06785 1.26514 1.59952 1.25368 0.95996 1.00650 1.03016 0.85579 0.78481 0.80702 0.78040 1.20456 1.22091 1.18825 1.19069 0.82676 0.93524 1.40702 0.91781 1.42861 1.02648 1.04331 1.90929 1.20843 0.89521 0.87203 0.99023 1.21623 0.94535 0.98930 0.96825 0.91929 1.21503 0.94345 0.94713 1.03856 1.21835 0.96017 1.02076 0.96662 1.22312 0.94893 0.85823 0.99963 1.48158 1.07406 1.07883 1.68985 1.18258 0.87058 0.82977 0.76860 1.90864 1.64190 1.39653 1.50126 1.20855 0.93713 0.99828 1.03079 1.23251 0.89641 0.92648 0.92083 1.67529 1.04084 1.26177 1.21180 1.20351 0.92415 0.92167 0.94202 1.68390 1.01823 1.26914 1.20510 1.25309 1.03294 0.88268 0.87939 1.25193 0.91767 0.96370 0.94959 1.68699 1.05437 1.23286 1.16568 1.20121 0.95650 0.96441 0.99262 1.21988 0.89982 0.95419 0.93241 1.21610 0.78538 1.01455 0.98466 0.93333 0.80502 0.94837 0.94776 0.89915 0.90432 0.87257 0.92347 0.88741 0.87958 0.80119 0.75074 0.74782 0.80162 0.89764 0.92225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -64.25 13.97 21.65 0.30 -63.95 16 2 C -0.06 -3.57 5.50 84.86 0.47 -3.10 16 3 Si 0.94 48.73 27.74 68.60 1.90 50.64 16 4 H -0.28 -13.99 7.11 99.48 0.71 -13.28 16 5 H -0.29 -15.29 7.11 99.48 0.71 -14.58 16 6 H -0.26 -13.04 6.52 99.48 0.65 -12.39 16 7 C -0.23 -13.31 10.47 84.03 0.88 -12.43 16 8 H 0.06 4.00 8.06 -2.91 -0.02 3.98 16 9 N -0.76 -36.45 5.18 -343.44 -1.78 -38.23 16 10 C 0.16 5.81 5.65 86.38 0.49 6.29 16 11 C -0.10 -2.73 2.38 -10.71 -0.03 -2.75 16 12 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 13 C -0.11 -1.89 5.17 30.62 0.16 -1.73 16 14 C -0.13 -1.70 6.06 30.53 0.19 -1.51 16 15 C 0.09 1.26 5.36 86.22 0.46 1.72 16 16 N -0.59 -13.73 2.98 -823.14 -2.45 -16.18 16 17 C 0.56 15.35 7.25 86.79 0.63 15.98 16 18 O -0.57 -21.28 16.48 -3.89 -0.06 -21.34 16 19 C -0.17 -3.64 5.02 -20.00 -0.10 -3.74 16 20 C 0.20 4.64 10.87 85.42 0.93 5.57 16 21 N -0.48 -12.19 10.39 -192.76 -2.00 -14.20 16 22 C 0.25 5.48 7.60 134.96 1.03 6.51 16 23 N -0.46 -8.53 10.55 -193.10 -2.04 -10.56 16 24 C 0.13 0.87 11.21 85.14 0.95 1.83 16 25 C 0.10 0.46 11.22 85.14 0.96 1.41 16 26 N -0.43 -5.52 10.46 -187.98 -1.97 -7.49 16 27 C 0.01 0.17 6.59 40.35 0.27 0.44 16 28 C 0.02 0.36 7.46 23.05 0.17 0.53 16 29 C 0.12 3.51 5.51 86.36 0.48 3.98 16 30 H 0.26 16.14 8.31 -92.71 -0.77 15.37 16 31 H 0.36 17.32 4.76 -92.71 -0.44 16.88 16 32 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 38 H 0.09 1.12 4.56 -2.38 -0.01 1.11 16 39 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.18 3.91 8.06 -2.91 -0.02 3.89 16 41 H 0.23 -0.92 8.06 -2.91 -0.02 -0.94 16 42 H 0.24 -1.40 8.06 -2.91 -0.02 -1.43 16 43 H 0.18 2.19 7.10 -2.91 -0.02 2.17 16 44 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 45 H 0.06 2.25 6.23 -2.39 -0.01 2.23 16 Total: -1.00 -87.93 368.25 0.36 -87.57 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: 0.54 Total: 14.75 kcal Atomic # 6 Polarization: 11.08 SS G_CDS: 7.92 Total: 19.00 kcal Atomic # 7 Polarization: -140.68 SS G_CDS: -9.93 Total: -150.61 kcal Atomic # 8 Polarization: -21.28 SS G_CDS: -0.06 Total: -21.34 kcal Atomic # 14 Polarization: 48.73 SS G_CDS: 1.90 Total: 50.64 kcal Total: -87.93 0.36 -87.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480285968.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.654 kcal (2) G-P(sol) polarization free energy of solvation -87.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds