Wall clock time and date at job start Sat Apr 11 2020 06:21:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86806 * 119.99542 * 2 1 4 4 H 1.48500 * 109.46879 * 239.99742 * 3 2 1 5 5 H 1.48492 * 109.47391 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46772 * 120.00481 * 3 2 1 7 7 C 1.38788 * 120.00249 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00459 * 180.02562 * 7 2 1 9 9 S 1.76198 * 119.99998 * 359.97438 * 7 2 1 10 10 C 1.81005 * 100.00346 * 180.02562 * 9 7 2 11 11 C 1.50694 * 109.47459 * 180.02562 * 10 9 7 12 12 O 1.21275 * 119.99961 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99872 * 179.97438 * 11 10 9 14 14 C 1.47018 * 125.64981 * 0.02817 * 13 11 10 15 15 C 1.54325 * 107.40412 * 178.82520 * 14 13 11 16 16 C 1.55405 * 102.82616 * 337.97548 * 15 14 13 17 17 H 1.09004 * 110.92671 * 277.25231 * 16 15 14 18 18 C 1.53000 * 111.03706 * 153.46985 * 16 15 14 19 19 N 1.46908 * 109.47103 * 181.23001 * 18 16 15 20 20 C 1.46901 * 110.99954 * 180.02562 * 19 18 16 21 21 C 1.50697 * 109.46958 * 179.97438 * 20 19 18 22 22 O 1.21279 * 120.00070 * 0.02562 * 21 20 19 23 23 N 1.34773 * 119.99950 * 179.97438 * 21 20 19 24 24 C 1.46503 * 120.00214 * 180.02562 * 23 21 20 25 25 C 1.53001 * 117.50149 * 223.62826 * 24 23 21 26 26 C 1.52998 * 117.49981 * 155.00024 * 24 23 21 27 27 C 1.47426 * 125.64500 * 179.97438 * 13 11 10 28 28 H 0.97002 * 120.00418 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.46776 * 59.99613 * 10 9 7 30 30 H 1.09007 * 109.46690 * 300.00486 * 10 9 7 31 31 H 1.09002 * 109.88241 * 298.32048 * 14 13 11 32 32 H 1.09000 * 109.88049 * 59.33177 * 14 13 11 33 33 H 1.09000 * 110.72188 * 96.24097 * 15 14 13 34 34 H 1.09002 * 110.72265 * 219.52294 * 15 14 13 35 35 H 1.08997 * 109.47218 * 301.22741 * 18 16 15 36 36 H 1.08997 * 109.47242 * 61.23212 * 18 16 15 37 37 H 1.00901 * 110.99848 * 56.04688 * 19 18 16 38 38 H 1.09000 * 109.47172 * 300.00065 * 20 19 18 39 39 H 1.09004 * 109.46799 * 59.99888 * 20 19 18 40 40 H 0.97003 * 120.00182 * 0.02562 * 23 21 20 41 41 H 1.09001 * 115.54927 * 9.32991 * 24 23 21 42 42 H 1.09003 * 117.49562 * 359.97438 * 25 24 23 43 43 H 1.08992 * 117.50324 * 145.02318 * 25 24 23 44 44 H 1.08994 * 117.50053 * 214.97952 * 26 24 23 45 45 H 1.09001 * 117.49871 * 0.02562 * 26 24 23 46 46 H 1.08999 * 110.36956 * 323.01018 * 27 13 11 47 47 H 1.09001 * 110.36709 * 85.22211 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6179 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0103 -1.2019 -0.0005 8 1 3.0904 -1.2020 -0.0001 9 16 1.1294 -2.7279 -0.0005 10 6 2.5160 -3.8914 -0.0005 11 6 1.9876 -5.3026 -0.0012 12 8 0.7913 -5.5022 -0.0021 13 7 2.8444 -6.3430 -0.0018 14 6 4.3113 -6.2449 -0.0014 15 6 4.8701 -7.6832 0.0278 16 6 3.6847 -8.5021 0.6103 17 1 3.6692 -8.4443 1.6987 18 6 3.7401 -9.9576 0.1421 19 7 2.5904 -10.6916 0.6876 20 6 2.6108 -12.0963 0.2583 21 6 1.4195 -12.8156 0.8366 22 8 0.6309 -12.2169 1.5369 23 7 1.2300 -14.1240 0.5746 24 6 0.0716 -14.8232 1.1363 25 6 0.3046 -16.2154 1.7267 26 6 -0.4332 -16.0628 0.3949 27 6 2.4658 -7.7678 -0.0019 28 1 -0.4851 0.8400 0.0004 29 1 3.1245 -3.7312 0.8894 30 1 3.1246 -3.7312 -0.8906 31 1 4.6490 -5.7342 -0.9032 32 1 4.6460 -5.6992 0.8808 33 1 5.1147 -8.0224 -0.9788 34 1 5.7417 -7.7451 0.6794 35 1 3.7085 -9.9904 -0.9469 36 1 4.6641 -10.4172 0.4928 37 1 1.7221 -10.2469 0.4297 38 1 2.5717 -12.1443 -0.8299 39 1 3.5271 -12.5704 0.6102 40 1 1.8606 -14.6028 0.0142 41 1 -0.6712 -14.1890 1.6202 42 1 1.3198 -16.6112 1.6968 43 1 -0.2848 -16.4972 2.5991 44 1 -1.5079 -16.2442 0.3913 45 1 0.0969 -16.3583 -0.5105 46 1 1.5799 -7.9250 0.6133 47 1 2.2856 -8.1124 -1.0202 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480631346.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:15 Heat of formation + Delta-G solvation = -41.298051 kcal Electronic energy + Delta-G solvation = -25968.711650 eV Core-core repulsion = 22085.452439 eV Total energy + Delta-G solvation = -3883.259211 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.27304 -39.80548 -37.86809 -37.40487 -35.67055 -33.34335 -32.40299 -32.14300 -29.66916 -29.28921 -27.06212 -25.48699 -24.65673 -22.93624 -22.79523 -22.18801 -21.09225 -20.52832 -19.29108 -17.83278 -17.66666 -17.13424 -16.70821 -16.50107 -16.01507 -15.33649 -15.21410 -14.89850 -14.77624 -14.55855 -14.41627 -14.17901 -13.86310 -13.60401 -13.38086 -13.17721 -12.88750 -12.63681 -12.56028 -12.34845 -12.21894 -12.13442 -11.80907 -11.74600 -11.38148 -11.06623 -11.05977 -11.01839 -11.00057 -10.90289 -10.73944 -10.22939 -9.79509 -9.36101 -9.26053 -9.03188 -8.86651 -8.45350 -8.20110 -6.46985 -6.18447 -3.89182 2.17842 2.47912 2.95924 3.11575 3.25489 3.28078 3.31387 3.38430 3.65054 3.72816 4.22113 4.22954 4.25643 4.33459 4.37806 4.40744 4.45453 4.60504 4.77400 4.83711 4.96555 5.06228 5.07622 5.11982 5.16369 5.16985 5.27056 5.32072 5.40469 5.44830 5.52078 5.56026 5.58706 5.67820 5.75985 5.86478 5.98368 5.99515 6.05684 6.17643 6.43260 6.47902 6.89159 7.03222 7.61785 7.72573 7.80947 8.37818 8.61074 9.26388 10.88921 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.024295 B = 0.001602 C = 0.001517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.226850 B =17476.718049 C =18447.058050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.072 0.928 9 S -0.061 6.061 10 C -0.146 4.146 11 C 0.547 3.453 12 O -0.515 6.515 13 N -0.626 5.626 14 C 0.102 3.898 15 C -0.124 4.124 16 C -0.101 4.101 17 H 0.097 0.903 18 C 0.074 3.926 19 N -0.676 5.676 20 C 0.043 3.957 21 C 0.514 3.486 22 O -0.516 6.516 23 N -0.708 5.708 24 C 0.080 3.920 25 C -0.194 4.194 26 C -0.190 4.190 27 C 0.110 3.890 28 H 0.269 0.731 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.036 0.964 36 H 0.079 0.921 37 H 0.356 0.644 38 H 0.061 0.939 39 H 0.103 0.897 40 H 0.401 0.599 41 H 0.139 0.861 42 H 0.096 0.904 43 H 0.102 0.898 44 H 0.104 0.896 45 H 0.097 0.903 46 H 0.081 0.919 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.211 -32.885 -1.505 34.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.684 4.684 8 H 0.090 0.910 9 S 0.166 5.834 10 C -0.297 4.297 11 C 0.336 3.664 12 O -0.389 6.389 13 N -0.363 5.363 14 C -0.022 4.022 15 C -0.162 4.162 16 C -0.120 4.120 17 H 0.115 0.885 18 C -0.055 4.055 19 N -0.309 5.309 20 C -0.090 4.090 21 C 0.300 3.700 22 O -0.389 6.389 23 N -0.359 5.359 24 C -0.026 4.026 25 C -0.232 4.232 26 C -0.228 4.228 27 C -0.014 4.014 28 H 0.079 0.921 29 H 0.107 0.893 30 H 0.106 0.894 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.102 0.898 35 H 0.054 0.946 36 H 0.098 0.902 37 H 0.176 0.824 38 H 0.079 0.921 39 H 0.121 0.879 40 H 0.235 0.765 41 H 0.156 0.844 42 H 0.115 0.885 43 H 0.121 0.879 44 H 0.122 0.878 45 H 0.115 0.885 46 H 0.099 0.901 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 8.922 -32.623 -0.394 33.823 hybrid contribution 2.148 0.969 -1.258 2.671 sum 11.069 -31.654 -1.652 33.574 Atomic orbital electron populations 1.70012 1.05947 1.27541 1.46776 1.24984 0.95018 0.98983 0.94543 0.86226 0.79235 0.81267 0.78777 1.19958 1.20806 1.19940 1.22821 0.94860 0.91660 1.59056 0.91002 1.85412 1.04989 0.96291 1.96710 1.23504 1.06409 0.95012 1.04749 1.20027 0.85698 0.85484 0.75189 1.90712 1.14939 1.85127 1.48133 1.48474 1.06478 1.05644 1.75751 1.21973 0.80608 0.97406 1.02173 1.22700 0.97756 0.93885 1.01876 1.22450 0.94813 0.92885 1.01863 0.88508 1.21913 0.94130 0.92723 0.96781 1.60136 1.06879 1.00360 1.63528 1.21776 0.97397 0.91245 0.98577 1.20653 0.87060 0.81542 0.80742 1.90760 1.45510 1.66071 1.36602 1.45374 1.27189 1.10414 1.52940 1.21608 0.91431 0.88145 1.01390 1.23429 1.02125 1.00177 0.97495 1.23385 1.01481 1.01768 0.96193 1.22198 0.98054 0.80825 1.00285 0.92138 0.89302 0.89370 0.91319 0.91220 0.90543 0.89754 0.94583 0.90220 0.82406 0.92086 0.87881 0.76514 0.84366 0.88508 0.87910 0.87778 0.88477 0.90079 0.92214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.54 13.22 55.49 0.73 -25.80 16 2 C 0.07 2.14 5.49 -17.43 -0.10 2.05 16 3 Si 0.92 21.64 29.55 -169.99 -5.02 16.61 16 4 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 6 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.54 -15.53 9.50 30.94 0.29 -15.24 16 8 H 0.07 1.96 7.80 -52.48 -0.41 1.55 16 9 S -0.06 -1.70 20.57 -107.50 -2.21 -3.91 16 10 C -0.15 -3.11 5.35 36.00 0.19 -2.92 16 11 C 0.55 11.09 7.87 -10.99 -0.09 11.01 16 12 O -0.52 -12.53 16.12 5.56 0.09 -12.44 16 13 N -0.63 -9.44 3.33 -170.52 -0.57 -10.01 16 14 C 0.10 1.11 6.48 -3.07 -0.02 1.09 16 15 C -0.12 -0.92 6.45 -24.76 -0.16 -1.08 16 16 C -0.10 -0.88 3.29 -88.34 -0.29 -1.17 16 17 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 18 C 0.07 0.50 5.20 -3.82 -0.02 0.48 16 19 N -0.68 -5.74 6.13 -115.05 -0.70 -6.44 16 20 C 0.04 0.25 6.17 -4.98 -0.03 0.22 16 21 C 0.51 4.42 7.87 -10.99 -0.09 4.34 16 22 O -0.52 -6.96 15.77 5.56 0.09 -6.88 16 23 N -0.71 -4.06 5.57 -53.81 -0.30 -4.36 16 24 C 0.08 0.51 6.43 -67.93 -0.44 0.07 16 25 C -0.19 -0.87 10.46 -26.73 -0.28 -1.15 16 26 C -0.19 -0.80 10.46 -26.73 -0.28 -1.08 16 27 C 0.11 1.36 5.61 -2.53 -0.01 1.35 16 28 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 29 H 0.09 1.76 8.14 -51.92 -0.42 1.34 16 30 H 0.09 1.73 8.14 -51.91 -0.42 1.31 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.08 0.48 8.04 -51.93 -0.42 0.07 16 34 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.04 0.22 8.10 -51.93 -0.42 -0.21 16 36 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.36 3.57 7.60 -39.29 -0.30 3.28 16 38 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 39 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.40 1.04 8.83 -40.82 -0.36 0.68 16 41 H 0.14 1.15 7.40 -51.93 -0.38 0.77 16 42 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 46 H 0.08 1.17 7.95 -51.93 -0.41 0.76 16 47 H 0.06 0.70 8.01 -51.93 -0.42 0.29 16 LS Contribution 406.06 15.07 6.12 6.12 Total: -1.00 -38.22 406.06 -10.84 -49.06 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -7.75 Total: 0.08 kcal Atomic # 6 Polarization: -0.72 SS G_CDS: -1.31 Total: -2.03 kcal Atomic # 7 Polarization: -45.78 SS G_CDS: -0.84 Total: -46.62 kcal Atomic # 8 Polarization: -19.49 SS G_CDS: 0.18 Total: -19.31 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 16 Polarization: -1.70 SS G_CDS: -2.21 Total: -3.91 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -38.22 -10.84 -49.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480631346.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.765 kcal (2) G-P(sol) polarization free energy of solvation -38.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds