Wall clock time and date at job start Sat Apr 11 2020 06:21:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86806 * 119.99542 * 2 1 4 4 H 1.48500 * 109.46879 * 239.99742 * 3 2 1 5 5 H 1.48492 * 109.47391 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46772 * 120.00481 * 3 2 1 7 7 C 1.38788 * 120.00249 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00459 * 180.02562 * 7 2 1 9 9 S 1.76198 * 119.99998 * 359.97438 * 7 2 1 10 10 C 1.81005 * 100.00346 * 180.02562 * 9 7 2 11 11 C 1.50694 * 109.47459 * 180.02562 * 10 9 7 12 12 O 1.21275 * 119.99961 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99872 * 179.97438 * 11 10 9 14 14 C 1.47018 * 125.64981 * 0.02817 * 13 11 10 15 15 C 1.54325 * 107.40412 * 178.82520 * 14 13 11 16 16 C 1.55405 * 102.82616 * 337.97548 * 15 14 13 17 17 H 1.09004 * 110.92671 * 277.25231 * 16 15 14 18 18 C 1.53000 * 111.03706 * 153.46985 * 16 15 14 19 19 N 1.46908 * 109.47103 * 181.23001 * 18 16 15 20 20 C 1.46901 * 110.99954 * 180.02562 * 19 18 16 21 21 C 1.50697 * 109.46958 * 179.97438 * 20 19 18 22 22 O 1.21279 * 120.00070 * 0.02562 * 21 20 19 23 23 N 1.34773 * 119.99950 * 179.97438 * 21 20 19 24 24 C 1.46503 * 120.00214 * 180.02562 * 23 21 20 25 25 C 1.53001 * 117.50149 * 223.62826 * 24 23 21 26 26 C 1.52998 * 117.49981 * 155.00024 * 24 23 21 27 27 C 1.47426 * 125.64500 * 179.97438 * 13 11 10 28 28 H 0.97002 * 120.00418 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.46776 * 59.99613 * 10 9 7 30 30 H 1.09007 * 109.46690 * 300.00486 * 10 9 7 31 31 H 1.09002 * 109.88241 * 298.32048 * 14 13 11 32 32 H 1.09000 * 109.88049 * 59.33177 * 14 13 11 33 33 H 1.09000 * 110.72188 * 96.24097 * 15 14 13 34 34 H 1.09002 * 110.72265 * 219.52294 * 15 14 13 35 35 H 1.08997 * 109.47218 * 301.22741 * 18 16 15 36 36 H 1.08997 * 109.47242 * 61.23212 * 18 16 15 37 37 H 1.00901 * 110.99848 * 56.04688 * 19 18 16 38 38 H 1.09000 * 109.47172 * 300.00065 * 20 19 18 39 39 H 1.09004 * 109.46799 * 59.99888 * 20 19 18 40 40 H 0.97003 * 120.00182 * 0.02562 * 23 21 20 41 41 H 1.09001 * 115.54927 * 9.32991 * 24 23 21 42 42 H 1.09003 * 117.49562 * 359.97438 * 25 24 23 43 43 H 1.08992 * 117.50324 * 145.02318 * 25 24 23 44 44 H 1.08994 * 117.50053 * 214.97952 * 26 24 23 45 45 H 1.09001 * 117.49871 * 0.02562 * 26 24 23 46 46 H 1.08999 * 110.36956 * 323.01018 * 27 13 11 47 47 H 1.09001 * 110.36709 * 85.22211 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6179 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0103 -1.2019 -0.0005 8 1 3.0904 -1.2020 -0.0001 9 16 1.1294 -2.7279 -0.0005 10 6 2.5160 -3.8914 -0.0005 11 6 1.9876 -5.3026 -0.0012 12 8 0.7913 -5.5022 -0.0021 13 7 2.8444 -6.3430 -0.0018 14 6 4.3113 -6.2449 -0.0014 15 6 4.8701 -7.6832 0.0278 16 6 3.6847 -8.5021 0.6103 17 1 3.6692 -8.4443 1.6987 18 6 3.7401 -9.9576 0.1421 19 7 2.5904 -10.6916 0.6876 20 6 2.6108 -12.0963 0.2583 21 6 1.4195 -12.8156 0.8366 22 8 0.6309 -12.2169 1.5369 23 7 1.2300 -14.1240 0.5746 24 6 0.0716 -14.8232 1.1363 25 6 0.3046 -16.2154 1.7267 26 6 -0.4332 -16.0628 0.3949 27 6 2.4658 -7.7678 -0.0019 28 1 -0.4851 0.8400 0.0004 29 1 3.1245 -3.7312 0.8894 30 1 3.1246 -3.7312 -0.8906 31 1 4.6490 -5.7342 -0.9032 32 1 4.6460 -5.6992 0.8808 33 1 5.1147 -8.0224 -0.9788 34 1 5.7417 -7.7451 0.6794 35 1 3.7085 -9.9904 -0.9469 36 1 4.6641 -10.4172 0.4928 37 1 1.7221 -10.2469 0.4297 38 1 2.5717 -12.1443 -0.8299 39 1 3.5271 -12.5704 0.6102 40 1 1.8606 -14.6028 0.0142 41 1 -0.6712 -14.1890 1.6202 42 1 1.3198 -16.6112 1.6968 43 1 -0.2848 -16.4972 2.5991 44 1 -1.5079 -16.2442 0.3913 45 1 0.0969 -16.3583 -0.5105 46 1 1.5799 -7.9250 0.6133 47 1 2.2856 -8.1124 -1.0202 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480631346.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:14 Heat of formation + Delta-G solvation = -70.916253 kcal Electronic energy + Delta-G solvation = -25969.995992 eV Core-core repulsion = 22085.452439 eV Total energy + Delta-G solvation = -3884.543553 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.12569 -40.80008 -38.89487 -38.09071 -36.45887 -34.59822 -33.94778 -33.18195 -30.88989 -30.32949 -27.96427 -27.58270 -25.55007 -23.60239 -23.28109 -22.70839 -21.69838 -21.26503 -20.70916 -19.58369 -18.44526 -18.05706 -17.72609 -17.39226 -16.89208 -16.87127 -16.55679 -16.01203 -15.80949 -15.59902 -15.34492 -15.13904 -14.99420 -14.57723 -14.31816 -14.29306 -13.93750 -13.65341 -13.56750 -13.33155 -13.16975 -13.14961 -12.86716 -12.78668 -12.63911 -12.49089 -12.33170 -12.06670 -11.86494 -11.71340 -11.59437 -11.49354 -11.13613 -11.00469 -10.91182 -10.30645 -9.76715 -9.71151 -9.38736 -8.70477 -8.35140 -6.15047 1.22707 1.44028 1.44332 1.53175 1.54994 1.57132 1.99959 2.09239 2.26705 2.97664 2.98754 3.12847 3.26085 3.54405 3.62968 3.73938 3.83425 3.87741 3.96734 4.04684 4.06362 4.19537 4.28991 4.35260 4.39086 4.41108 4.45454 4.49939 4.64386 4.71902 4.75315 4.82132 4.85743 4.91759 4.99195 5.01366 5.11827 5.19517 5.32136 5.39896 5.42646 5.51030 5.95258 6.18473 6.22937 6.38016 6.56128 7.05241 7.08892 7.27078 8.74060 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.024295 B = 0.001602 C = 0.001517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.226850 B =17476.718049 C =18447.058050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.013 3.987 3 Si 1.001 2.999 4 H -0.260 1.260 5 H -0.278 1.278 6 H -0.261 1.261 7 C -0.547 4.547 8 H 0.084 0.916 9 S -0.155 6.155 10 C -0.118 4.118 11 C 0.542 3.458 12 O -0.571 6.571 13 N -0.618 5.618 14 C 0.086 3.914 15 C -0.107 4.107 16 C -0.089 4.089 17 H 0.083 0.917 18 C 0.081 3.919 19 N -0.700 5.700 20 C 0.048 3.952 21 C 0.507 3.493 22 O -0.578 6.578 23 N -0.691 5.691 24 C 0.049 3.951 25 C -0.183 4.183 26 C -0.173 4.173 27 C 0.104 3.896 28 H 0.272 0.728 29 H 0.105 0.895 30 H 0.108 0.892 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.098 0.902 34 H 0.112 0.888 35 H 0.052 0.948 36 H 0.105 0.895 37 H 0.341 0.659 38 H 0.088 0.912 39 H 0.131 0.869 40 H 0.419 0.581 41 H 0.108 0.892 42 H 0.110 0.890 43 H 0.103 0.897 44 H 0.106 0.894 45 H 0.114 0.886 46 H 0.050 0.950 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.546 -34.547 -2.578 37.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.191 4.191 3 Si 0.822 3.178 4 H -0.185 1.185 5 H -0.203 1.203 6 H -0.186 1.186 7 C -0.695 4.695 8 H 0.102 0.898 9 S 0.073 5.927 10 C -0.269 4.269 11 C 0.330 3.670 12 O -0.450 6.450 13 N -0.352 5.352 14 C -0.035 4.035 15 C -0.145 4.145 16 C -0.109 4.109 17 H 0.102 0.898 18 C -0.048 4.048 19 N -0.332 5.332 20 C -0.083 4.083 21 C 0.294 3.706 22 O -0.457 6.457 23 N -0.343 5.343 24 C -0.057 4.057 25 C -0.222 4.222 26 C -0.211 4.211 27 C -0.019 4.019 28 H 0.080 0.920 29 H 0.124 0.876 30 H 0.126 0.874 31 H 0.098 0.902 32 H 0.093 0.907 33 H 0.117 0.883 34 H 0.130 0.870 35 H 0.070 0.930 36 H 0.123 0.877 37 H 0.159 0.841 38 H 0.105 0.895 39 H 0.149 0.851 40 H 0.256 0.744 41 H 0.126 0.874 42 H 0.128 0.872 43 H 0.121 0.879 44 H 0.125 0.875 45 H 0.132 0.868 46 H 0.068 0.932 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 13.352 -34.382 -1.493 36.914 hybrid contribution 0.820 1.295 -0.917 1.786 sum 14.172 -33.087 -2.410 36.075 Atomic orbital electron populations 1.70189 1.08070 1.28735 1.47833 1.26168 0.95978 1.03403 0.93580 0.84967 0.77778 0.75436 0.79575 1.18473 1.20336 1.18598 1.23160 0.95346 0.91788 1.59217 0.89821 1.85633 1.10653 0.99410 1.97054 1.23288 1.03341 0.93868 1.06363 1.19851 0.85490 0.86202 0.75463 1.90686 1.17269 1.85845 1.51208 1.48472 1.08148 1.05616 1.72989 1.22412 0.77637 1.00490 1.03004 1.22719 0.97467 0.90566 1.03761 1.22382 0.93295 0.94271 1.00905 0.89841 1.21934 0.94335 0.90886 0.97632 1.60154 1.06711 1.01724 1.64619 1.21870 0.96936 0.89660 0.99872 1.21278 0.87213 0.82149 0.79941 1.90737 1.47815 1.67483 1.39629 1.45236 1.27061 1.09713 1.52261 1.21565 0.91832 0.88701 1.03635 1.23485 1.02948 0.97946 0.97810 1.23454 1.01909 0.99116 0.96666 1.22411 0.99070 0.79679 1.00698 0.91953 0.87633 0.87407 0.90176 0.90719 0.88302 0.86977 0.93014 0.87704 0.84118 0.89466 0.85142 0.74381 0.87444 0.87157 0.87880 0.87540 0.86771 0.93171 0.91227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -57.24 13.22 21.65 0.29 -56.95 16 2 C 0.01 0.78 5.49 84.85 0.47 1.24 16 3 Si 1.00 44.17 29.55 68.60 2.03 46.19 16 4 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 5 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 6 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 7 C -0.55 -32.06 9.50 67.95 0.65 -31.42 16 8 H 0.08 4.52 7.80 -2.91 -0.02 4.50 16 9 S -0.15 -9.00 20.57 -56.49 -1.16 -10.16 16 10 C -0.12 -5.03 5.35 71.23 0.38 -4.65 16 11 C 0.54 22.52 7.87 87.66 0.69 23.21 16 12 O -0.57 -29.44 16.12 -3.01 -0.05 -29.49 16 13 N -0.62 -18.33 3.33 -811.81 -2.70 -21.03 16 14 C 0.09 1.64 6.48 86.73 0.56 2.21 16 15 C -0.11 -1.14 6.45 31.87 0.21 -0.94 16 16 C -0.09 -1.35 3.29 -9.31 -0.03 -1.38 16 17 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 18 C 0.08 0.82 5.20 86.30 0.45 1.27 16 19 N -0.70 -11.07 6.13 -517.92 -3.17 -14.24 16 20 C 0.05 0.47 6.17 85.56 0.53 1.00 16 21 C 0.51 8.67 7.87 87.66 0.69 9.36 16 22 O -0.58 -16.76 15.77 -3.03 -0.05 -16.81 16 23 N -0.69 -7.33 5.57 -442.54 -2.46 -9.79 16 24 C 0.05 0.63 6.43 44.99 0.29 0.92 16 25 C -0.18 -1.44 10.46 30.60 0.32 -1.12 16 26 C -0.17 -1.22 10.46 30.60 0.32 -0.90 16 27 C 0.10 2.57 5.61 86.85 0.49 3.06 16 28 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 29 H 0.11 4.13 8.14 -2.40 -0.02 4.11 16 30 H 0.11 4.15 8.14 -2.39 -0.02 4.13 16 31 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.10 0.70 8.04 -2.39 -0.02 0.68 16 34 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.05 0.39 8.10 -2.39 -0.02 0.38 16 36 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.34 7.07 7.60 -89.69 -0.68 6.39 16 38 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 39 H 0.13 0.56 8.14 -2.39 -0.02 0.54 16 40 H 0.42 1.20 8.83 -92.71 -0.82 0.39 16 41 H 0.11 2.05 7.40 -2.39 -0.02 2.03 16 42 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 43 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 44 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 45 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 46 H 0.05 1.56 7.95 -2.39 -0.02 1.54 16 47 H 0.07 1.59 8.01 -2.39 -0.02 1.57 16 Total: -1.00 -90.54 406.06 -1.80 -92.34 By element: Atomic # 1 Polarization: 18.62 SS G_CDS: -0.52 Total: 18.10 kcal Atomic # 6 Polarization: -4.15 SS G_CDS: 6.00 Total: 1.85 kcal Atomic # 7 Polarization: -93.97 SS G_CDS: -8.05 Total: -102.02 kcal Atomic # 8 Polarization: -46.21 SS G_CDS: -0.10 Total: -46.30 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.19 kcal Atomic # 16 Polarization: -9.00 SS G_CDS: -1.16 Total: -10.16 kcal Total: -90.54 -1.80 -92.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480631346.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.421 kcal (2) G-P(sol) polarization free energy of solvation -90.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds