Wall clock time and date at job start Sat Apr 11 2020 06:21:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86800 * 120.00036 * 2 1 4 4 H 1.48511 * 109.47049 * 89.99772 * 3 2 1 5 5 H 1.48494 * 109.47357 * 209.99845 * 3 2 1 6 6 H 1.48502 * 109.47120 * 330.00564 * 3 2 1 7 7 C 1.38798 * 120.00311 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00434 * 180.02562 * 7 2 1 9 9 S 1.76199 * 119.99771 * 0.02562 * 7 2 1 10 10 C 1.80998 * 100.00013 * 180.02562 * 9 7 2 11 11 C 1.50708 * 109.47052 * 180.02562 * 10 9 7 12 12 O 1.21284 * 119.99748 * 359.97438 * 11 10 9 13 13 N 1.34775 * 119.99957 * 180.02562 * 11 10 9 14 14 C 1.47019 * 125.64724 * 0.02562 * 13 11 10 15 15 C 1.54322 * 107.27077 * 181.02578 * 14 13 11 16 16 C 1.55155 * 102.94408 * 22.19401 * 15 14 13 17 17 H 1.09005 * 111.00006 * 82.56901 * 16 15 14 18 18 C 1.52996 * 111.00534 * 206.42254 * 16 15 14 19 19 N 1.46906 * 109.46807 * 184.99878 * 18 16 15 20 20 C 1.46908 * 110.99627 * 180.02562 * 19 18 16 21 21 C 1.50699 * 109.46708 * 179.97438 * 20 19 18 22 22 O 1.21284 * 120.00157 * 0.02562 * 21 20 19 23 23 N 1.34770 * 119.99993 * 179.97438 * 21 20 19 24 24 C 1.46501 * 120.00331 * 180.02562 * 23 21 20 25 25 C 1.53010 * 117.49772 * 223.75061 * 24 23 21 26 26 C 1.53001 * 117.50017 * 155.08949 * 24 23 21 27 27 C 1.47419 * 125.64747 * 179.71629 * 13 11 10 28 28 H 0.97001 * 119.99662 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47183 * 299.99528 * 10 9 7 30 30 H 1.08991 * 109.47038 * 60.00359 * 10 9 7 31 31 H 1.09003 * 109.88787 * 300.44403 * 14 13 11 32 32 H 1.09011 * 109.88491 * 61.45629 * 14 13 11 33 33 H 1.09005 * 110.72248 * 140.55725 * 15 14 13 34 34 H 1.09000 * 110.72275 * 263.82621 * 15 14 13 35 35 H 1.09000 * 109.47616 * 304.99767 * 18 16 15 36 36 H 1.09005 * 109.47252 * 65.00481 * 18 16 15 37 37 H 1.00901 * 111.00113 * 303.95609 * 19 18 16 38 38 H 1.09000 * 109.46836 * 299.99907 * 20 19 18 39 39 H 1.09000 * 109.46784 * 60.00271 * 20 19 18 40 40 H 0.97008 * 119.99773 * 0.02562 * 23 21 20 41 41 H 1.09000 * 115.55039 * 9.41861 * 24 23 21 42 42 H 1.08998 * 117.49774 * 359.97438 * 25 24 23 43 43 H 1.09003 * 117.49502 * 145.02339 * 25 24 23 44 44 H 1.09003 * 117.49905 * 214.97807 * 26 24 23 45 45 H 1.09002 * 117.49623 * 359.97438 * 26 24 23 46 46 H 1.09003 * 110.36213 * 274.74222 * 27 13 11 47 47 H 1.09001 * 110.37046 * 37.06382 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0465 1.4002 5 1 3.5479 1.4402 -0.7000 6 1 1.4477 2.6527 -0.6999 7 6 2.0104 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 16 1.1294 -2.7279 -0.0019 10 6 2.5160 -3.8913 -0.0013 11 6 1.9875 -5.3027 -0.0030 12 8 0.7911 -5.5022 -0.0040 13 7 2.8442 -6.3431 -0.0024 14 6 4.3111 -6.2450 0.0004 15 6 4.8666 -7.6846 -0.0263 16 6 3.6858 -8.5019 -0.6137 17 1 3.6731 -8.4429 -1.7021 18 6 3.7402 -9.9576 -0.1461 19 7 2.6813 -10.7263 -0.8140 20 6 2.7027 -12.1320 -0.3879 21 6 1.6047 -12.8870 -1.0918 22 8 0.8764 -12.3109 -1.8720 23 7 1.4327 -14.2026 -0.8551 24 6 0.3657 -14.9367 -1.5398 25 6 -0.4709 -15.9088 -0.7054 26 6 0.5465 -16.4458 -1.7153 27 6 2.4656 -7.7678 0.0021 28 1 -0.4850 -0.8401 -0.0004 29 1 3.1252 -3.7309 -0.8909 30 1 3.1238 -3.7317 0.8891 31 1 4.6481 -5.7013 -0.8822 32 1 4.6468 -5.7324 0.9020 33 1 5.7404 -7.7489 -0.6748 34 1 5.1071 -8.0239 0.9812 35 1 4.7116 -10.3838 -0.3967 36 1 3.5930 -9.9984 0.9332 37 1 1.7757 -10.3127 -0.6497 38 1 3.6670 -12.5734 -0.6398 39 1 2.5481 -12.1874 0.6897 40 1 2.0154 -14.6634 -0.2314 41 1 -0.1406 -14.3943 -2.3383 42 1 -0.2270 -16.0025 0.3528 43 1 -1.5274 -16.0063 -0.9553 44 1 0.1589 -16.8963 -2.6291 45 1 1.4597 -16.8923 -1.3217 46 1 2.2890 -8.1101 1.0218 47 1 1.5787 -7.9267 -0.6113 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480631347.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:17 Heat of formation + Delta-G solvation = -46.778600 kcal Electronic energy + Delta-G solvation = -25970.872883 eV Core-core repulsion = 22087.376017 eV Total energy + Delta-G solvation = -3883.496865 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.30549 -39.88784 -37.92113 -37.45935 -35.72988 -33.37192 -32.50810 -32.22700 -29.73728 -29.39887 -27.13952 -24.98950 -24.52910 -22.96124 -22.85636 -22.22927 -21.13142 -20.59411 -19.37500 -18.21851 -17.83947 -17.13633 -16.84524 -16.62112 -16.10744 -15.43229 -15.24040 -15.10665 -14.65613 -14.49381 -14.28437 -14.12443 -13.82466 -13.62170 -13.45198 -13.24572 -12.93801 -12.68640 -12.52954 -12.37266 -12.28863 -12.16026 -11.87424 -11.82880 -11.81216 -11.43519 -11.08062 -11.06908 -10.96267 -10.89281 -10.26357 -10.17693 -9.56045 -9.48250 -9.28640 -8.99324 -8.90981 -8.54233 -8.19641 -6.65058 -6.60341 -3.98020 2.14608 2.45012 2.83289 2.99852 3.34504 3.35849 3.40381 3.48627 3.58077 3.69664 4.18887 4.21089 4.24360 4.28933 4.32919 4.38106 4.43068 4.57017 4.74131 4.80193 4.90022 5.01056 5.03740 5.05460 5.11968 5.24387 5.24610 5.27691 5.37925 5.38875 5.42638 5.49928 5.53393 5.58855 5.67664 5.76878 5.88879 5.95801 6.00537 6.04323 6.37927 6.40972 6.85335 7.00000 7.62272 7.77738 7.94241 8.49254 8.52141 9.29262 10.83699 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.024842 B = 0.001588 C = 0.001508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.867890 B =17627.771515 C =18557.792431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.035 3.965 3 Si 1.087 2.913 4 H -0.284 1.284 5 H -0.287 1.287 6 H -0.280 1.280 7 C -0.607 4.607 8 H 0.066 0.934 9 S -0.117 6.117 10 C -0.124 4.124 11 C 0.546 3.454 12 O -0.516 6.516 13 N -0.625 5.625 14 C 0.101 3.899 15 C -0.123 4.123 16 C -0.101 4.101 17 H 0.098 0.902 18 C 0.073 3.927 19 N -0.675 5.675 20 C 0.042 3.958 21 C 0.514 3.486 22 O -0.517 6.517 23 N -0.707 5.707 24 C 0.080 3.920 25 C -0.194 4.194 26 C -0.189 4.189 27 C 0.109 3.891 28 H 0.278 0.722 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.084 0.916 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.036 0.964 37 H 0.355 0.645 38 H 0.104 0.896 39 H 0.061 0.939 40 H 0.401 0.599 41 H 0.139 0.861 42 H 0.097 0.903 43 H 0.103 0.897 44 H 0.104 0.896 45 H 0.097 0.903 46 H 0.061 0.939 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.834 -33.528 1.289 35.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.175 4.175 3 Si 0.914 3.086 4 H -0.211 1.211 5 H -0.213 1.213 6 H -0.205 1.205 7 C -0.755 4.755 8 H 0.084 0.916 9 S 0.109 5.891 10 C -0.275 4.275 11 C 0.335 3.665 12 O -0.390 6.390 13 N -0.362 5.362 14 C -0.022 4.022 15 C -0.162 4.162 16 C -0.120 4.120 17 H 0.117 0.883 18 C -0.056 4.056 19 N -0.308 5.308 20 C -0.090 4.090 21 C 0.300 3.700 22 O -0.390 6.390 23 N -0.359 5.359 24 C -0.026 4.026 25 C -0.233 4.233 26 C -0.228 4.228 27 C -0.014 4.014 28 H 0.091 0.909 29 H 0.110 0.890 30 H 0.109 0.891 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.103 0.897 34 H 0.095 0.905 35 H 0.098 0.902 36 H 0.055 0.945 37 H 0.175 0.825 38 H 0.122 0.878 39 H 0.079 0.921 40 H 0.235 0.765 41 H 0.156 0.844 42 H 0.115 0.885 43 H 0.121 0.879 44 H 0.122 0.878 45 H 0.115 0.885 46 H 0.079 0.921 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 9.620 -31.750 0.142 33.176 hybrid contribution 1.797 -1.677 1.311 2.786 sum 11.418 -33.428 1.453 35.354 Atomic orbital electron populations 1.70766 1.06709 1.31018 1.43376 1.26057 0.96329 1.02118 0.93021 0.83286 0.74423 0.73939 0.77002 1.21073 1.21299 1.20496 1.23723 0.96029 0.92150 1.63603 0.91598 1.84833 1.08198 0.98836 1.97215 1.23286 1.04941 0.94162 1.05071 1.20003 0.85737 0.85504 0.75299 1.90713 1.14935 1.85140 1.48245 1.48441 1.06550 1.05669 1.75566 1.22003 0.80455 0.97543 1.02224 1.22649 0.97843 0.93754 1.01933 1.22460 0.94762 0.92907 1.01915 0.88348 1.21922 0.95589 0.92325 0.95756 1.60164 1.09381 1.00204 1.61093 1.21781 0.98522 0.90934 0.97787 1.20650 0.85300 0.81661 0.82363 1.90758 1.45788 1.67765 1.34719 1.45374 1.34434 1.09531 1.46556 1.21611 0.92768 0.88875 0.99343 1.23451 0.98002 1.04095 0.97711 1.23393 1.01399 0.96059 1.01926 1.22289 0.98076 0.80691 1.00325 0.90941 0.89034 0.89094 0.91166 0.91253 0.89693 0.90482 0.90162 0.94540 0.82474 0.87835 0.92082 0.76496 0.84379 0.88493 0.87873 0.87789 0.88464 0.92056 0.90168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -27.93 13.67 55.49 0.76 -27.17 16 2 C 0.04 1.04 5.49 -17.43 -0.10 0.94 16 3 Si 1.09 25.29 29.92 -169.99 -5.09 20.21 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 5 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.61 -17.82 9.50 30.94 0.29 -17.52 16 8 H 0.07 1.85 7.80 -52.49 -0.41 1.44 16 9 S -0.12 -3.25 19.60 -107.50 -2.11 -5.36 16 10 C -0.12 -2.63 5.35 36.01 0.19 -2.44 16 11 C 0.55 10.98 7.87 -10.98 -0.09 10.89 16 12 O -0.52 -12.43 16.12 5.55 0.09 -12.34 16 13 N -0.62 -9.31 3.32 -170.37 -0.57 -9.88 16 14 C 0.10 1.09 6.48 -3.07 -0.02 1.07 16 15 C -0.12 -0.90 6.42 -24.90 -0.16 -1.06 16 16 C -0.10 -0.87 3.26 -88.35 -0.29 -1.15 16 17 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 18 C 0.07 0.48 5.19 -3.82 -0.02 0.46 16 19 N -0.68 -5.59 6.13 -115.05 -0.70 -6.30 16 20 C 0.04 0.25 6.17 -4.97 -0.03 0.22 16 21 C 0.51 4.34 7.87 -10.99 -0.09 4.25 16 22 O -0.52 -6.86 15.77 5.55 0.09 -6.78 16 23 N -0.71 -3.96 5.57 -53.80 -0.30 -4.26 16 24 C 0.08 0.49 6.43 -67.92 -0.44 0.06 16 25 C -0.19 -0.87 10.46 -26.68 -0.28 -1.15 16 26 C -0.19 -0.75 10.46 -26.69 -0.28 -1.03 16 27 C 0.11 1.33 5.86 -2.41 -0.01 1.32 16 28 H 0.28 8.99 7.12 -40.82 -0.29 8.70 16 29 H 0.09 1.83 8.14 -51.91 -0.42 1.40 16 30 H 0.09 1.80 8.14 -51.92 -0.42 1.38 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.07 0.71 8.14 -51.92 -0.42 0.29 16 33 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.08 0.47 8.04 -51.93 -0.42 0.06 16 35 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.04 0.21 7.96 -51.93 -0.41 -0.20 16 37 H 0.36 3.48 7.93 -39.29 -0.31 3.17 16 38 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 40 H 0.40 0.99 8.83 -40.82 -0.36 0.63 16 41 H 0.14 1.12 7.40 -51.93 -0.38 0.74 16 42 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.10 0.29 8.14 -51.93 -0.42 -0.14 16 46 H 0.06 0.70 7.91 -51.93 -0.41 0.29 16 47 H 0.08 1.13 8.03 -51.93 -0.42 0.71 16 LS Contribution 405.08 15.07 6.10 6.10 Total: -1.00 -38.88 405.08 -10.74 -49.62 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -7.71 Total: 1.31 kcal Atomic # 6 Polarization: -3.85 SS G_CDS: -1.31 Total: -5.16 kcal Atomic # 7 Polarization: -46.80 SS G_CDS: -0.81 Total: -47.61 kcal Atomic # 8 Polarization: -19.29 SS G_CDS: 0.18 Total: -19.12 kcal Atomic # 14 Polarization: 25.29 SS G_CDS: -5.09 Total: 20.21 kcal Atomic # 16 Polarization: -3.25 SS G_CDS: -2.11 Total: -5.36 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -38.88 -10.74 -49.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480631347.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.843 kcal (2) G-P(sol) polarization free energy of solvation -38.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds