Wall clock time and date at job start Sat Apr 11 2020 06:21:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86800 * 119.99573 * 2 1 4 4 H 1.48496 * 109.47150 * 270.00344 * 3 2 1 5 5 H 1.48498 * 109.47031 * 30.00193 * 3 2 1 6 6 H 1.48497 * 109.46975 * 149.99944 * 3 2 1 7 7 C 1.38804 * 120.00400 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00471 * 180.02562 * 7 2 1 9 9 N 1.36942 * 120.00126 * 359.97438 * 7 2 1 10 10 C 1.46495 * 120.00280 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47572 * 180.02562 * 10 9 7 12 12 H 1.09000 * 110.88582 * 51.10982 * 11 10 9 13 13 C 1.55153 * 111.00890 * 175.00074 * 11 10 9 14 14 C 1.54322 * 102.94254 * 153.57356 * 13 11 10 15 15 N 1.47018 * 107.27325 * 337.80566 * 14 13 11 16 16 C 1.34774 * 125.64637 * 178.90077 * 15 14 13 17 17 O 1.21518 * 119.99771 * 185.56565 * 16 15 14 18 18 C 1.48155 * 120.00355 * 5.57253 * 16 15 14 19 19 C 1.39952 * 120.89063 * 353.17512 * 18 16 15 20 20 C 1.38044 * 119.13525 * 179.97438 * 19 18 16 21 21 N 1.31852 * 120.98063 * 359.97344 * 20 19 18 22 22 C 1.32225 * 121.97342 * 0.02722 * 21 20 19 23 23 N 1.39847 * 119.62438 * 179.97438 * 22 21 20 24 24 C 1.37180 * 126.48609 * 4.71207 * 23 22 21 25 25 C 1.34612 * 106.83039 * 179.87713 * 24 23 22 26 26 N 1.34162 * 108.21410 * 0.38989 * 25 24 23 27 27 C 1.30483 * 109.37115 * 359.75146 * 26 25 24 28 28 C 1.38909 * 120.75044 * 359.97438 * 22 21 20 29 29 C 1.47428 * 108.70188 * 359.16842 * 15 14 13 30 30 H 0.96993 * 120.00520 * 359.97438 * 1 2 3 31 31 H 0.97001 * 119.99558 * 0.02562 * 9 7 2 32 32 H 1.08997 * 109.47467 * 59.99997 * 10 9 7 33 33 H 1.09007 * 109.46805 * 300.00018 * 10 9 7 34 34 H 1.08998 * 110.72032 * 35.20917 * 13 11 10 35 35 H 1.09004 * 110.87026 * 272.00745 * 13 11 10 36 36 H 1.09001 * 109.88296 * 218.38325 * 14 13 11 37 37 H 1.09001 * 109.88110 * 97.22362 * 14 13 11 38 38 H 1.07997 * 120.43149 * 359.97438 * 19 18 16 39 39 H 1.07999 * 119.50438 * 179.97438 * 20 19 18 40 40 H 1.08004 * 126.58208 * 359.97438 * 24 23 22 41 41 H 1.08004 * 125.89575 * 180.13627 * 25 24 23 42 42 H 1.07998 * 125.71692 * 180.02562 * 27 26 25 43 43 H 1.08000 * 120.52281 * 180.02562 * 28 22 21 44 44 H 1.08997 * 110.36502 * 142.73773 * 29 15 14 45 45 H 1.08997 * 110.36489 * 265.06471 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0465 -1.4000 5 1 1.4475 2.6526 0.7001 6 1 3.5476 1.4403 0.7000 7 6 2.0104 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 2.0583 -3.6567 -0.0005 11 6 1.0642 -4.8197 -0.0012 12 1 0.3260 -4.6995 -0.7941 13 6 1.7996 -6.1800 -0.1274 14 6 0.8250 -7.1644 0.5528 15 7 -0.0331 -6.3783 1.4512 16 6 -1.0309 -6.8689 2.2129 17 8 -1.7428 -6.1121 2.8430 18 6 -1.2596 -8.3311 2.2822 19 6 -0.5467 -9.2097 1.4586 20 6 -0.7883 -10.5655 1.5536 21 7 -1.6765 -11.0385 2.4058 22 6 -2.3730 -10.2462 3.2030 23 7 -3.3030 -10.8007 4.0880 24 6 -3.5307 -12.1367 4.3007 25 6 -4.5011 -12.2237 5.2295 26 7 -4.8664 -10.9790 5.5722 27 6 -4.1566 -10.1180 4.8959 28 6 -2.1914 -8.8694 3.1714 29 6 0.3743 -4.9634 1.3760 30 1 -0.4850 0.8399 0.0004 31 1 0.3557 -2.3881 -0.0005 32 1 2.6849 -3.7145 0.8894 33 1 2.6850 -3.7144 -0.8906 34 1 2.7525 -6.1537 0.4011 35 1 1.9480 -6.4456 -1.1741 36 1 1.3845 -7.9030 1.1268 37 1 0.2149 -7.6622 -0.2009 38 1 0.1831 -8.8320 0.7578 39 1 -0.2418 -11.2489 0.9206 40 1 -3.0268 -12.9605 3.8170 41 1 -4.9170 -13.1377 5.6271 42 1 -4.2341 -9.0431 4.9666 43 1 -2.7620 -8.2258 3.8245 44 1 -0.4989 -4.3136 1.4329 45 1 1.0764 -4.7279 2.1757 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480680543.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:20 Heat of formation + Delta-G solvation = 116.834759 kcal Electronic energy + Delta-G solvation = -28147.673876 eV Core-core repulsion = 24168.120618 eV Total energy + Delta-G solvation = -3979.553258 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.75243 -41.14405 -39.72470 -37.85702 -35.12183 -34.55836 -33.38521 -32.28867 -30.74336 -30.61044 -29.71806 -28.90582 -26.37591 -25.04658 -24.40333 -23.54876 -22.26877 -21.77412 -21.32738 -20.46589 -20.15427 -18.95409 -17.51622 -17.08190 -16.70055 -16.63540 -16.19102 -15.86909 -15.69676 -15.17189 -14.84220 -14.49198 -14.34361 -14.26198 -14.13024 -13.90674 -13.88491 -13.55076 -13.25449 -12.95732 -12.84851 -12.73471 -12.16783 -11.74684 -11.34480 -11.22753 -10.94231 -10.79069 -10.73966 -10.61507 -10.56070 -10.50080 -10.47311 -10.07928 -10.05072 -9.74130 -9.29430 -8.93800 -8.91019 -8.83983 -6.99264 -5.80981 -3.11041 0.02032 0.24257 1.70068 1.93175 2.55759 2.61264 2.74303 3.28836 3.40752 3.45776 3.47952 3.67304 3.84105 4.08100 4.23256 4.25121 4.38074 4.40883 4.51152 4.62471 4.69359 4.84772 4.87147 4.98981 5.04321 5.11380 5.16425 5.25991 5.37183 5.43707 5.53168 5.66158 5.71686 5.76281 5.79385 5.82872 5.96525 6.04975 6.22242 6.26739 6.27445 6.58610 6.65968 6.70254 7.15613 7.21615 7.57892 7.64955 7.80639 8.37002 9.48422 10.04223 10.38146 11.41526 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.022785 B = 0.001954 C = 0.001817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.562110 B =14324.394498 C =15406.498294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.012 4.012 3 Si 0.908 3.092 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.244 4.244 8 H 0.071 0.929 9 N -0.733 5.733 10 C 0.165 3.835 11 C -0.105 4.105 12 H 0.087 0.913 13 C -0.128 4.128 14 C 0.086 3.914 15 N -0.605 5.605 16 C 0.567 3.433 17 O -0.520 6.520 18 C -0.048 4.048 19 C -0.187 4.187 20 C 0.132 3.868 21 N -0.487 5.487 22 C 0.342 3.658 23 N -0.411 5.411 24 C -0.027 4.027 25 C -0.030 4.030 26 N -0.477 5.477 27 C 0.197 3.803 28 C -0.125 4.125 29 C 0.114 3.886 30 H 0.256 0.744 31 H 0.384 0.616 32 H 0.023 0.977 33 H 0.026 0.974 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.179 0.821 39 H 0.175 0.825 40 H 0.182 0.818 41 H 0.177 0.823 42 H 0.214 0.786 43 H 0.156 0.844 44 H 0.089 0.911 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.616 -27.262 2.477 27.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.208 4.208 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.375 4.375 8 H 0.089 0.911 9 N -0.378 5.378 10 C 0.037 3.963 11 C -0.125 4.125 12 H 0.106 0.894 13 C -0.166 4.166 14 C -0.036 4.036 15 N -0.339 5.339 16 C 0.355 3.645 17 O -0.396 6.396 18 C -0.060 4.060 19 C -0.207 4.207 20 C -0.026 4.026 21 N -0.199 5.199 22 C 0.114 3.886 23 N -0.094 5.094 24 C -0.157 4.157 25 C -0.175 4.175 26 N -0.194 5.194 27 C -0.085 4.085 28 C -0.148 4.148 29 C -0.007 4.007 30 H 0.066 0.934 31 H 0.218 0.782 32 H 0.040 0.960 33 H 0.043 0.957 34 H 0.101 0.899 35 H 0.105 0.895 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.196 0.804 39 H 0.192 0.808 40 H 0.200 0.800 41 H 0.194 0.806 42 H 0.231 0.769 43 H 0.174 0.826 44 H 0.107 0.893 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.644 -27.437 3.479 27.706 hybrid contribution 0.900 1.484 -0.690 1.867 sum -0.744 -25.954 2.788 26.114 Atomic orbital electron populations 1.69654 1.05125 1.25806 1.57344 1.24761 0.95527 0.97782 1.02777 0.86185 0.78646 0.83796 0.77507 1.21693 1.21736 1.20747 1.19195 0.91019 0.84081 1.43196 0.91127 1.42365 1.05886 0.99917 1.89601 1.20583 0.92655 0.84736 0.98327 1.22571 0.98562 0.94833 0.96523 0.89439 1.22730 0.98247 0.94175 1.01445 1.22603 0.92948 0.95205 0.92889 1.48412 1.32431 1.10634 1.42379 1.17642 0.80195 0.86717 0.79966 1.90846 1.45493 1.58930 1.44340 1.20203 0.95703 0.94266 0.95803 1.23776 1.01469 0.94582 1.00849 1.22647 0.92501 0.93741 0.93673 1.66842 1.07371 1.40061 1.05647 1.17992 0.91034 0.88441 0.91114 1.43142 1.28004 1.07714 1.30513 1.22928 1.03500 0.85369 1.03865 1.22436 0.99114 0.96068 0.99839 1.70371 1.24503 1.00559 1.23960 1.25488 0.90645 1.00105 0.92241 1.21641 0.99384 0.93221 1.00507 1.22438 1.00506 0.79759 0.97997 0.93405 0.78203 0.95963 0.95667 0.89929 0.89505 0.90325 0.90298 0.80402 0.80809 0.80045 0.80591 0.76949 0.82616 0.89307 0.90528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.85 13.06 55.49 0.72 -27.12 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 22.06 29.55 -169.99 -5.02 17.04 16 4 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.24 -6.62 9.99 -15.06 -0.15 -6.77 16 8 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 9 N -0.73 -17.59 5.55 -59.91 -0.33 -17.92 16 10 C 0.17 2.94 5.72 -4.04 -0.02 2.91 16 11 C -0.11 -1.43 3.03 -88.59 -0.27 -1.70 16 12 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 13 C -0.13 -1.11 6.42 -24.90 -0.16 -1.27 16 14 C 0.09 0.65 4.88 -3.07 -0.01 0.64 16 15 N -0.61 -7.22 3.33 -172.01 -0.57 -7.79 16 16 C 0.57 7.51 7.83 -12.19 -0.10 7.42 16 17 O -0.52 -8.93 16.69 5.35 0.09 -8.84 16 18 C -0.05 -0.49 5.90 -104.68 -0.62 -1.11 16 19 C -0.19 -1.29 8.69 -39.01 -0.34 -1.63 16 20 C 0.13 0.85 11.17 -17.61 -0.20 0.65 16 21 N -0.49 -4.41 9.87 -12.34 -0.12 -4.53 16 22 C 0.34 3.39 7.50 -154.42 -1.16 2.24 16 23 N -0.41 -4.13 2.98 -63.84 -0.19 -4.32 16 24 C -0.03 -0.25 11.17 -16.44 -0.18 -0.43 16 25 C -0.03 -0.28 11.85 -17.82 -0.21 -0.49 16 26 N -0.48 -5.49 11.24 -14.46 -0.16 -5.65 16 27 C 0.20 1.97 11.89 -89.59 -1.07 0.91 16 28 C -0.12 -1.25 9.07 -38.83 -0.35 -1.60 16 29 C 0.11 1.66 6.35 -2.64 -0.02 1.65 16 30 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 31 H 0.38 9.81 7.67 -40.82 -0.31 9.49 16 32 H 0.02 0.40 7.96 -51.93 -0.41 -0.01 16 33 H 0.03 0.45 8.14 -51.92 -0.42 0.03 16 34 H 0.08 0.68 8.04 -51.93 -0.42 0.26 16 35 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.08 0.43 6.75 -51.93 -0.35 0.08 16 37 H 0.08 0.45 6.76 -51.93 -0.35 0.10 16 38 H 0.18 0.82 2.93 -52.96 -0.16 0.66 16 39 H 0.17 0.49 8.06 -52.49 -0.42 0.06 16 40 H 0.18 1.29 8.06 -52.48 -0.42 0.87 16 41 H 0.18 1.16 8.06 -52.48 -0.42 0.74 16 42 H 0.21 1.54 7.07 -52.49 -0.37 1.17 16 43 H 0.16 1.49 6.47 -52.49 -0.34 1.15 16 44 H 0.09 1.56 7.99 -51.93 -0.41 1.14 16 45 H 0.08 1.16 7.90 -51.93 -0.41 0.75 16 LS Contribution 374.83 15.07 5.65 5.65 Total: -1.00 -35.57 374.83 -10.51 -46.08 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: -5.62 Total: 6.44 kcal Atomic # 6 Polarization: 5.92 SS G_CDS: -4.95 Total: 0.97 kcal Atomic # 7 Polarization: -66.68 SS G_CDS: -0.65 Total: -67.34 kcal Atomic # 8 Polarization: -8.93 SS G_CDS: 0.09 Total: -8.84 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -35.57 -10.51 -46.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480680543.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.912 kcal (2) G-P(sol) polarization free energy of solvation -35.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.077 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds