Wall clock time and date at job start Sat Apr 11 2020 06:21:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86797 * 119.99951 * 2 1 4 4 H 1.48499 * 109.47284 * 90.00085 * 3 2 1 5 5 H 1.48496 * 109.47150 * 210.00111 * 3 2 1 6 6 H 1.48504 * 109.47348 * 329.99850 * 3 2 1 7 7 C 1.38814 * 119.99867 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00410 * 359.97438 * 7 2 1 9 9 N 1.36937 * 119.99778 * 180.02562 * 7 2 1 10 10 C 1.46494 * 119.99855 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47275 * 179.97438 * 10 9 7 12 12 H 1.09002 * 110.88470 * 302.57132 * 11 10 9 13 13 C 1.55153 * 111.01001 * 178.64782 * 11 10 9 14 14 C 1.54319 * 102.94637 * 206.41997 * 13 11 10 15 15 N 1.47027 * 107.26839 * 22.19066 * 14 13 11 16 16 C 1.34773 * 125.64808 * 181.09011 * 15 14 13 17 17 O 1.21513 * 120.00423 * 174.42570 * 16 15 14 18 18 C 1.48165 * 120.00029 * 354.43108 * 16 15 14 19 19 C 1.39948 * 120.89253 * 6.87314 * 18 16 15 20 20 C 1.38043 * 119.13503 * 179.97438 * 19 18 16 21 21 N 1.31846 * 120.98140 * 359.97438 * 20 19 18 22 22 C 1.32231 * 121.97643 * 0.02562 * 21 20 19 23 23 N 1.39849 * 119.62653 * 180.02562 * 22 21 20 24 24 C 1.37166 * 126.48378 * 4.71574 * 23 22 21 25 25 C 1.34625 * 106.82913 * 179.83953 * 24 23 22 26 26 N 1.34156 * 108.20966 * 0.42294 * 25 24 23 27 27 C 1.30475 * 109.37187 * 359.73064 * 26 25 24 28 28 C 1.38909 * 120.74812 * 359.73813 * 22 21 20 29 29 C 1.47422 * 108.70151 * 1.06110 * 15 14 13 30 30 H 0.97000 * 119.99868 * 359.97438 * 1 2 3 31 31 H 0.97003 * 120.00345 * 359.97438 * 9 7 2 32 32 H 1.09006 * 109.47141 * 299.99024 * 10 9 7 33 33 H 1.08995 * 109.47676 * 59.99712 * 10 9 7 34 34 H 1.08999 * 110.71971 * 324.78637 * 13 11 10 35 35 H 1.09007 * 110.72143 * 88.05403 * 13 11 10 36 36 H 1.08998 * 109.88327 * 262.77661 * 14 13 11 37 37 H 1.09004 * 110.01071 * 141.67542 * 14 13 11 38 38 H 1.08004 * 120.42939 * 359.97438 * 19 18 16 39 39 H 1.08000 * 119.50115 * 179.97438 * 20 19 18 40 40 H 1.08003 * 126.59129 * 359.95713 * 24 23 22 41 41 H 1.07992 * 125.89582 * 180.15412 * 25 24 23 42 42 H 1.08010 * 125.71854 * 180.02562 * 27 26 25 43 43 H 1.07997 * 120.53062 * 180.26739 * 28 22 21 44 44 H 1.09003 * 110.36037 * 217.02731 * 29 15 14 45 45 H 1.09003 * 110.46422 * 94.75863 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 1.4000 5 1 3.5477 1.4402 -0.7000 6 1 1.4477 2.6527 -0.7001 7 6 2.0103 -1.2022 0.0005 8 1 1.4703 -2.1375 0.0014 9 7 3.3797 -1.2022 0.0011 10 6 4.1121 -2.4708 0.0011 11 6 5.6164 -2.1913 0.0011 12 1 5.8983 -1.5813 -0.8572 13 6 6.4278 -3.5133 0.0352 14 6 7.7537 -3.0880 0.7005 15 7 7.4847 -1.8612 1.4648 16 6 8.3932 -1.1623 2.1737 17 8 8.0820 -0.1051 2.6856 18 6 9.7717 -1.6830 2.3289 19 6 10.1922 -2.8219 1.6327 20 6 11.4847 -3.2752 1.8041 21 7 12.3215 -2.6516 2.6099 22 6 11.9681 -1.5725 3.2875 23 7 12.8958 -0.9496 4.1283 24 6 14.2168 -1.2875 4.2777 25 6 14.7385 -0.4325 5.1773 26 7 13.7659 0.4006 5.5770 27 6 12.6578 0.1015 4.9564 28 6 10.6876 -1.0472 3.1690 29 6 6.0568 -1.5218 1.3267 30 1 -0.4850 0.8401 0.0004 31 1 3.8647 -0.3621 0.0007 32 1 3.8486 -3.0426 0.8910 33 1 3.8492 -3.0423 -0.8890 34 1 5.9171 -4.2638 0.6385 35 1 6.6044 -3.8837 -0.9746 36 1 8.5055 -2.8912 -0.0638 37 1 8.1034 -3.8732 1.3708 38 1 9.5142 -3.3393 0.9701 39 1 11.8154 -4.1538 1.2700 40 1 14.7388 -2.0849 3.7696 41 1 15.7621 -0.4221 5.5213 42 1 11.7103 0.6052 5.0798 43 1 10.4041 -0.1632 3.7208 44 1 5.9279 -0.4410 1.2671 45 1 5.4865 -1.9254 2.1633 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480680544.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:23 Heat of formation + Delta-G solvation = 121.063848 kcal Electronic energy + Delta-G solvation = -28291.700247 eV Core-core repulsion = 24312.330376 eV Total energy + Delta-G solvation = -3979.369871 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.80177 -41.22312 -39.81575 -37.97766 -35.27448 -34.66236 -33.45046 -32.33398 -30.92836 -30.80274 -29.78279 -29.14499 -26.60499 -25.16187 -24.48053 -23.55672 -22.03952 -21.78237 -21.37886 -20.58610 -20.26936 -19.04546 -17.73344 -17.45572 -16.76849 -16.69878 -16.28159 -15.90967 -15.79966 -15.25562 -14.86286 -14.55533 -14.38730 -14.30831 -14.20526 -14.04079 -13.95602 -13.83691 -13.21536 -12.96499 -12.94982 -12.74559 -12.29956 -11.93805 -11.71144 -11.29606 -11.06915 -10.87250 -10.83481 -10.73287 -10.58841 -10.54776 -10.51388 -10.18217 -10.12497 -9.64399 -9.34689 -8.99369 -8.95990 -8.92190 -7.31298 -5.82221 -3.18986 -0.04295 0.18014 1.64984 1.87955 2.46334 2.52024 2.69931 3.22204 3.34797 3.38370 3.43863 3.60929 3.76386 4.02025 4.16390 4.18571 4.30532 4.33354 4.47118 4.54929 4.59695 4.77195 4.79083 4.93040 4.94984 5.03215 5.06882 5.21113 5.25482 5.33831 5.48009 5.57439 5.60093 5.63226 5.65910 5.71103 5.74351 5.90907 5.99646 6.10043 6.23198 6.47557 6.57786 6.61087 7.10143 7.10374 7.53505 7.70104 7.91985 8.36231 9.14306 9.86767 10.04953 11.35819 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.019396 B = 0.002181 C = 0.001987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.219239 B =12836.851137 C =14088.071524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.007 3.993 3 Si 0.883 3.117 4 H -0.282 1.282 5 H -0.278 1.278 6 H -0.290 1.290 7 C -0.248 4.248 8 H 0.091 0.909 9 N -0.757 5.757 10 C 0.169 3.831 11 C -0.110 4.110 12 H 0.086 0.914 13 C -0.126 4.126 14 C 0.086 3.914 15 N -0.606 5.606 16 C 0.568 3.432 17 O -0.521 6.521 18 C -0.049 4.049 19 C -0.187 4.187 20 C 0.133 3.867 21 N -0.486 5.486 22 C 0.343 3.657 23 N -0.412 5.412 24 C -0.027 4.027 25 C -0.030 4.030 26 N -0.477 5.477 27 C 0.196 3.804 28 C -0.125 4.125 29 C 0.111 3.889 30 H 0.260 0.740 31 H 0.361 0.639 32 H 0.032 0.968 33 H 0.034 0.966 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.179 0.821 39 H 0.175 0.825 40 H 0.183 0.817 41 H 0.177 0.823 42 H 0.214 0.786 43 H 0.156 0.844 44 H 0.083 0.917 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.525 -10.412 3.077 30.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.189 4.189 3 Si 0.713 3.287 4 H -0.209 1.209 5 H -0.204 1.204 6 H -0.216 1.216 7 C -0.378 4.378 8 H 0.109 0.891 9 N -0.402 5.402 10 C 0.042 3.958 11 C -0.130 4.130 12 H 0.105 0.895 13 C -0.165 4.165 14 C -0.037 4.037 15 N -0.339 5.339 16 C 0.356 3.644 17 O -0.397 6.397 18 C -0.061 4.061 19 C -0.207 4.207 20 C -0.025 4.025 21 N -0.199 5.199 22 C 0.115 3.885 23 N -0.094 5.094 24 C -0.156 4.156 25 C -0.174 4.174 26 N -0.193 5.193 27 C -0.085 4.085 28 C -0.148 4.148 29 C -0.010 4.010 30 H 0.070 0.930 31 H 0.194 0.806 32 H 0.049 0.951 33 H 0.052 0.948 34 H 0.104 0.896 35 H 0.106 0.894 36 H 0.097 0.903 37 H 0.098 0.902 38 H 0.196 0.804 39 H 0.192 0.808 40 H 0.200 0.800 41 H 0.194 0.806 42 H 0.230 0.770 43 H 0.174 0.826 44 H 0.102 0.898 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 29.078 -9.582 4.045 30.882 hybrid contribution -0.291 0.841 -0.718 1.143 sum 28.787 -8.742 3.327 30.269 Atomic orbital electron populations 1.69700 1.05105 1.25927 1.57205 1.24677 0.95237 0.97241 1.01792 0.86584 0.79157 0.84991 0.77985 1.20881 1.20392 1.21634 1.19020 0.80494 0.94746 1.43521 0.89142 1.42715 1.04164 1.02094 1.91272 1.20567 0.86421 0.89639 0.99210 1.22664 0.97363 0.95940 0.97022 0.89525 1.22722 0.93862 0.98128 1.01750 1.22623 0.99142 0.86815 0.95087 1.48395 1.10416 1.26471 1.48628 1.17658 0.83572 0.83970 0.79219 1.90840 1.79548 1.21359 1.47995 1.20178 0.94253 0.95239 0.96382 1.23772 0.99012 0.96801 1.01097 1.22655 0.88911 0.97899 0.93027 1.66846 1.38153 1.07088 1.07768 1.17994 0.87049 0.91338 0.92125 1.43141 1.08784 1.25996 1.31492 1.22934 0.83448 1.04538 1.04713 1.22444 0.99765 0.95413 0.99800 1.70366 0.99003 1.25725 1.24244 1.25480 1.00618 0.90197 0.92224 1.21640 0.91156 1.01806 1.00170 1.22478 0.78175 1.01960 0.98375 0.92977 0.80616 0.95051 0.94800 0.89648 0.89354 0.90257 0.90163 0.80395 0.80762 0.80018 0.80559 0.76977 0.82631 0.89832 0.90063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.89 13.97 55.49 0.78 -28.12 16 2 C 0.01 0.19 5.50 -17.43 -0.10 0.10 16 3 Si 0.88 21.99 27.73 -169.99 -4.71 17.27 16 4 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 5 H -0.28 -6.49 6.52 56.52 0.37 -6.12 16 6 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 7 C -0.25 -6.80 10.47 -15.06 -0.16 -6.96 16 8 H 0.09 2.64 8.06 -52.49 -0.42 2.22 16 9 N -0.76 -16.92 5.26 -59.91 -0.31 -17.23 16 10 C 0.17 2.83 5.71 -4.04 -0.02 2.81 16 11 C -0.11 -1.37 3.10 -88.47 -0.27 -1.64 16 12 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 13 C -0.13 -0.99 6.42 -24.90 -0.16 -1.15 16 14 C 0.09 0.58 4.88 -3.06 -0.01 0.57 16 15 N -0.61 -6.73 3.33 -171.87 -0.57 -7.30 16 16 C 0.57 7.11 7.83 -12.18 -0.10 7.01 16 17 O -0.52 -8.54 16.69 5.35 0.09 -8.45 16 18 C -0.05 -0.47 5.90 -104.67 -0.62 -1.08 16 19 C -0.19 -1.19 8.69 -39.01 -0.34 -1.53 16 20 C 0.13 0.80 11.17 -17.62 -0.20 0.60 16 21 N -0.49 -4.21 9.87 -12.34 -0.12 -4.33 16 22 C 0.34 3.26 7.50 -154.41 -1.16 2.10 16 23 N -0.41 -3.99 2.98 -63.84 -0.19 -4.18 16 24 C -0.03 -0.24 11.17 -16.44 -0.18 -0.42 16 25 C -0.03 -0.27 11.85 -17.81 -0.21 -0.48 16 26 N -0.48 -5.34 11.24 -14.47 -0.16 -5.50 16 27 C 0.20 1.90 11.89 -89.60 -1.07 0.84 16 28 C -0.12 -1.19 9.07 -38.82 -0.35 -1.54 16 29 C 0.11 1.51 6.11 -2.53 -0.02 1.49 16 30 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 31 H 0.36 8.00 5.40 -40.82 -0.22 7.78 16 32 H 0.03 0.53 8.10 -51.93 -0.42 0.11 16 33 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.08 0.64 8.04 -51.93 -0.42 0.22 16 35 H 0.09 0.53 8.14 -51.92 -0.42 0.11 16 36 H 0.08 0.39 6.76 -51.93 -0.35 0.04 16 37 H 0.08 0.38 6.74 -51.93 -0.35 0.03 16 38 H 0.18 0.71 2.93 -52.95 -0.16 0.55 16 39 H 0.18 0.41 8.06 -52.49 -0.42 -0.01 16 40 H 0.18 1.24 8.06 -52.48 -0.42 0.81 16 41 H 0.18 1.12 8.06 -52.49 -0.42 0.70 16 42 H 0.21 1.45 7.07 -52.48 -0.37 1.08 16 43 H 0.16 1.41 6.47 -52.49 -0.34 1.07 16 44 H 0.08 1.33 7.99 -51.93 -0.41 0.92 16 45 H 0.08 1.15 8.00 -51.93 -0.42 0.73 16 LS Contribution 371.54 15.07 5.60 5.60 Total: -1.00 -36.52 371.54 -10.16 -46.68 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -5.58 Total: 4.86 kcal Atomic # 6 Polarization: 5.67 SS G_CDS: -4.96 Total: 0.71 kcal Atomic # 7 Polarization: -66.08 SS G_CDS: -0.59 Total: -66.66 kcal Atomic # 8 Polarization: -8.54 SS G_CDS: 0.09 Total: -8.45 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.71 Total: 17.27 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -36.52 -10.16 -46.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480680544.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.741 kcal (2) G-P(sol) polarization free energy of solvation -36.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds