Wall clock time and date at job start Sat Apr 11 2020 06:21:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99637 * 2 1 4 4 H 1.48494 * 109.47228 * 0.02562 * 3 2 1 5 5 H 1.48501 * 109.46793 * 120.00355 * 3 2 1 6 6 H 1.48500 * 109.47000 * 240.00448 * 3 2 1 7 7 C 1.38811 * 120.00134 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99665 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99798 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99567 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46932 * 179.97438 * 10 9 7 12 12 H 1.09008 * 110.01604 * 53.61530 * 11 10 9 13 13 C 1.54259 * 110.03578 * 292.17092 * 11 10 9 14 14 C 1.54888 * 104.19544 * 217.10740 * 13 11 10 15 15 C 1.54888 * 102.74928 * 37.94077 * 14 13 11 16 16 C 1.53874 * 110.03179 * 175.00163 * 11 10 9 17 17 H 1.09005 * 110.03346 * 238.57542 * 16 11 10 18 18 N 1.46505 * 110.03223 * 359.97438 * 16 11 10 19 19 C 1.34771 * 120.00284 * 204.99689 * 18 16 11 20 20 O 1.21558 * 119.99595 * 0.02562 * 19 18 16 21 21 C 1.47842 * 120.00356 * 180.02562 * 19 18 16 22 22 C 1.40601 * 120.27612 * 359.72865 * 21 19 18 23 23 N 1.30819 * 121.51532 * 179.75938 * 22 21 19 24 24 C 1.33750 * 121.79706 * 0.50246 * 23 22 21 25 25 N 1.33893 * 120.61298 * 179.74225 * 24 23 22 26 26 C 1.31333 * 119.84350 * 180.02562 * 25 24 23 27 27 C 1.39766 * 120.77872 * 359.97438 * 26 25 24 28 28 N 1.31302 * 120.55156 * 0.02562 * 27 26 25 29 29 C 1.33665 * 119.70992 * 359.95474 * 28 27 26 30 30 C 1.38910 * 120.28069 * 179.97438 * 21 19 18 31 31 H 0.97005 * 119.99717 * 180.02562 * 1 2 3 32 32 H 0.97000 * 120.00607 * 0.02562 * 9 7 2 33 33 H 1.08998 * 109.47306 * 300.00481 * 10 9 7 34 34 H 1.08997 * 109.46860 * 60.00305 * 10 9 7 35 35 H 1.09003 * 110.48546 * 335.78245 * 13 11 10 36 36 H 1.08999 * 110.48909 * 98.42560 * 13 11 10 37 37 H 1.08998 * 110.75677 * 279.62374 * 14 13 11 38 38 H 1.09001 * 110.75711 * 156.25553 * 14 13 11 39 39 H 1.09002 * 110.48146 * 203.37818 * 15 14 13 40 40 H 1.08999 * 110.59917 * 80.79403 * 15 14 13 41 41 H 0.96998 * 119.99873 * 25.00760 * 18 16 11 42 42 H 1.08000 * 119.24147 * 0.02562 * 22 21 19 43 43 H 1.08007 * 119.61385 * 179.97438 * 26 25 24 44 44 H 1.07997 * 119.72167 * 180.02562 * 27 26 25 45 45 H 1.07997 * 120.99420 * 359.96271 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2851 2.7465 0.0006 5 1 3.1039 1.6964 1.2125 6 1 3.1038 1.6966 -1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0017 11 6 1.0640 -4.8197 -0.0008 12 1 0.3588 -4.7083 -0.8245 13 6 0.3065 -4.8663 1.3422 14 6 0.1442 -6.3787 1.6344 15 6 1.4893 -6.9682 1.1423 16 6 1.8160 -6.1561 -0.1279 17 1 1.4752 -6.6937 -1.0128 18 7 3.2585 -5.9142 -0.2123 19 6 4.0591 -6.8166 -0.8132 20 8 3.5843 -7.8310 -1.2856 21 6 5.5148 -6.5728 -0.8979 22 6 6.0695 -5.3988 -0.3585 23 7 7.3546 -5.1606 -0.4158 24 6 8.2043 -6.0142 -0.9974 25 7 9.5147 -5.7442 -1.0472 26 6 10.3355 -6.5928 -1.6225 27 6 9.8581 -7.7796 -2.1856 28 7 8.5776 -8.0675 -2.1499 29 6 7.7237 -7.2187 -1.5691 30 6 6.3454 -7.4992 -1.5154 31 1 -0.4850 -0.8401 0.0004 32 1 0.3556 -2.3881 -0.0005 33 1 2.6843 -3.7140 -0.8921 34 1 2.6855 -3.7148 0.8878 35 1 0.8915 -4.3868 2.1270 36 1 -0.6690 -4.3894 1.2467 37 1 -0.6897 -6.7942 1.0686 38 1 0.0133 -6.5540 2.7022 39 1 1.3769 -8.0252 0.9010 40 1 2.2665 -6.8300 1.8939 41 1 3.6373 -5.1047 0.1645 42 1 5.4203 -4.6790 0.1178 43 1 11.3919 -6.3711 -1.6609 44 1 10.5483 -8.4655 -2.6541 45 1 5.9457 -8.4077 -1.9411 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482677690.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:26 Heat of formation + Delta-G solvation = 65.739027 kcal Electronic energy + Delta-G solvation = -28813.952500 eV Core-core repulsion = 24832.183565 eV Total energy + Delta-G solvation = -3981.768935 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.12726 -40.45778 -38.80570 -37.88709 -35.45442 -34.73005 -33.95479 -32.37268 -31.61047 -31.50215 -28.47640 -28.00196 -26.19324 -25.49296 -24.34648 -23.24410 -22.76904 -22.11701 -20.66412 -19.72002 -19.32547 -18.81329 -18.22098 -17.44399 -16.78102 -16.28528 -16.02971 -15.51639 -15.46086 -15.17126 -14.99488 -14.75350 -14.45933 -13.98776 -13.75057 -13.62890 -13.44376 -13.30229 -13.13569 -13.07263 -12.38886 -12.27163 -12.19169 -11.82743 -11.38089 -11.15541 -10.96284 -10.81163 -10.66367 -10.61421 -10.51711 -10.37391 -10.22116 -9.99730 -9.79275 -9.65801 -9.22091 -9.20639 -9.14632 -8.91610 -7.06698 -6.14435 -3.15112 -0.55029 -0.23827 1.27429 1.94232 2.80062 2.86502 3.04247 3.49675 3.50955 3.53819 3.56764 3.57619 3.71149 4.10558 4.14695 4.28853 4.40198 4.52445 4.55308 4.67555 4.68114 4.76923 4.95780 5.04547 5.30242 5.36225 5.41567 5.46565 5.50283 5.56225 5.61569 5.71882 5.77061 5.84585 5.92339 5.98115 6.00307 6.13839 6.28425 6.40393 6.43051 6.45687 6.52928 6.64360 6.95322 7.28661 7.45020 7.75102 7.94042 8.71930 9.17470 10.03917 10.18143 11.33987 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009516 B = 0.003081 C = 0.002401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2941.617509 B = 9084.464842 C =11660.015324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.043 4.043 3 Si 1.078 2.922 4 H -0.285 1.285 5 H -0.294 1.294 6 H -0.295 1.295 7 C -0.335 4.335 8 H 0.065 0.935 9 N -0.738 5.738 10 C 0.161 3.839 11 C -0.110 4.110 12 H 0.083 0.917 13 C -0.113 4.113 14 C -0.124 4.124 15 C -0.132 4.132 16 C 0.149 3.851 17 H 0.094 0.906 18 N -0.711 5.711 19 C 0.564 3.436 20 O -0.532 6.532 21 C -0.176 4.176 22 C 0.195 3.805 23 N -0.451 5.451 24 C 0.273 3.727 25 N -0.416 5.416 26 C 0.113 3.887 27 C 0.072 3.928 28 N -0.405 5.405 29 C 0.017 3.983 30 C 0.040 3.960 31 H 0.255 0.745 32 H 0.368 0.632 33 H 0.022 0.978 34 H 0.018 0.982 35 H 0.072 0.928 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.407 0.593 42 H 0.177 0.823 43 H 0.186 0.814 44 H 0.184 0.816 45 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.162 -19.120 -0.971 24.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.240 4.240 3 Si 0.909 3.091 4 H -0.210 1.210 5 H -0.222 1.222 6 H -0.222 1.222 7 C -0.466 4.466 8 H 0.083 0.917 9 N -0.384 5.384 10 C 0.033 3.967 11 C -0.130 4.130 12 H 0.101 0.899 13 C -0.150 4.150 14 C -0.162 4.162 15 C -0.171 4.171 16 C 0.045 3.955 17 H 0.112 0.888 18 N -0.364 5.364 19 C 0.350 3.650 20 O -0.410 6.410 21 C -0.184 4.184 22 C 0.017 3.983 23 N -0.159 5.159 24 C 0.034 3.966 25 N -0.131 5.131 26 C -0.066 4.066 27 C -0.105 4.105 28 N -0.119 5.119 29 C -0.110 4.110 30 C 0.012 3.988 31 H 0.066 0.934 32 H 0.201 0.799 33 H 0.039 0.961 34 H 0.036 0.964 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.247 0.753 42 H 0.194 0.806 43 H 0.203 0.797 44 H 0.201 0.799 45 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 15.096 -17.323 -0.893 22.995 hybrid contribution -0.048 -1.966 -0.244 1.982 sum 15.048 -19.289 -1.138 24.491 Atomic orbital electron populations 1.70895 1.06058 1.28420 1.53360 1.25767 0.97025 1.01010 1.00237 0.83265 0.74260 0.75625 0.75953 1.21025 1.22162 1.22220 1.20009 0.92021 0.85772 1.48799 0.91719 1.42307 1.04896 1.00628 1.90575 1.20642 0.93365 0.85308 0.97394 1.22261 0.98067 0.93478 0.99147 0.89857 1.22372 1.00687 0.95373 0.96609 1.22482 0.96778 0.96068 1.00845 1.22771 0.97960 0.99471 0.96885 1.21735 0.78314 0.96243 0.99237 0.88817 1.46326 1.08419 1.23513 1.58159 1.17809 0.85055 0.83683 0.78500 1.90790 1.75725 1.27024 1.47444 1.21203 0.95638 0.97489 1.04023 1.23403 0.90596 0.93416 0.90860 1.67516 1.03155 1.29799 1.15472 1.20139 0.91905 0.89898 0.94678 1.68368 1.01493 1.30152 1.13094 1.24376 1.01353 0.89997 0.90895 1.24252 0.92688 0.96898 0.96631 1.68601 1.03450 1.28891 1.10998 1.20203 0.95455 0.94328 1.00975 1.21777 0.89235 0.98195 0.89592 0.93390 0.79851 0.96052 0.96414 0.90899 0.91287 0.91426 0.91452 0.91239 0.91161 0.75339 0.80593 0.79744 0.79893 0.81558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.66 13.70 55.49 0.76 -27.90 16 2 C -0.04 -1.22 5.50 -17.43 -0.10 -1.31 16 3 Si 1.08 25.63 29.92 -169.99 -5.09 20.54 16 4 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.34 -9.16 9.99 -15.06 -0.15 -9.32 16 8 H 0.06 1.73 7.83 -52.49 -0.41 1.32 16 9 N -0.74 -17.62 5.45 -59.91 -0.33 -17.95 16 10 C 0.16 2.92 4.19 -4.04 -0.02 2.91 16 11 C -0.11 -1.62 2.96 -89.50 -0.26 -1.89 16 12 H 0.08 1.28 8.14 -51.92 -0.42 0.86 16 13 C -0.11 -1.56 6.08 -25.08 -0.15 -1.71 16 14 C -0.12 -1.38 6.91 -24.74 -0.17 -1.55 16 15 C -0.13 -1.51 6.53 -25.08 -0.16 -1.67 16 16 C 0.15 1.92 3.22 -66.81 -0.22 1.70 16 17 H 0.09 1.27 7.56 -51.93 -0.39 0.88 16 18 N -0.71 -8.77 4.34 -53.66 -0.23 -9.01 16 19 C 0.56 7.33 7.77 -12.33 -0.10 7.23 16 20 O -0.53 -8.23 16.04 5.31 0.09 -8.15 16 21 C -0.18 -2.06 5.89 -104.83 -0.62 -2.68 16 22 C 0.20 2.28 10.69 -17.09 -0.18 2.10 16 23 N -0.45 -6.20 10.39 -12.28 -0.13 -6.33 16 24 C 0.27 3.57 7.60 -157.60 -1.20 2.37 16 25 N -0.42 -4.87 10.55 -12.38 -0.13 -5.00 16 26 C 0.11 0.77 11.21 -17.19 -0.19 0.58 16 27 C 0.07 0.46 11.22 -17.21 -0.19 0.26 16 28 N -0.40 -4.06 10.46 -10.77 -0.11 -4.17 16 29 C 0.02 0.20 6.59 -84.79 -0.56 -0.36 16 30 C 0.04 0.46 9.68 -38.38 -0.37 0.09 16 31 H 0.25 7.59 6.77 -40.82 -0.28 7.31 16 32 H 0.37 9.05 6.38 -40.82 -0.26 8.79 16 33 H 0.02 0.40 7.42 -51.93 -0.39 0.02 16 34 H 0.02 0.32 7.10 -51.93 -0.37 -0.05 16 35 H 0.07 1.10 7.76 -51.93 -0.40 0.70 16 36 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.07 0.79 8.05 -51.93 -0.42 0.37 16 41 H 0.41 4.75 3.93 -40.82 -0.16 4.59 16 42 H 0.18 1.72 6.38 -52.49 -0.33 1.39 16 43 H 0.19 0.40 8.06 -52.48 -0.42 -0.02 16 44 H 0.18 0.32 8.06 -52.49 -0.42 -0.10 16 45 H 0.17 1.77 7.70 -52.49 -0.40 1.36 16 LS Contribution 371.92 15.07 5.60 5.60 Total: -1.00 -36.03 371.92 -9.78 -45.80 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: -5.57 Total: 9.80 kcal Atomic # 6 Polarization: 1.39 SS G_CDS: -4.64 Total: -3.26 kcal Atomic # 7 Polarization: -70.18 SS G_CDS: -0.17 Total: -70.35 kcal Atomic # 8 Polarization: -8.23 SS G_CDS: 0.09 Total: -8.15 kcal Atomic # 14 Polarization: 25.63 SS G_CDS: -5.09 Total: 20.54 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -36.03 -9.78 -45.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482677690.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.543 kcal (2) G-P(sol) polarization free energy of solvation -36.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.804 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds