Wall clock time and date at job start Sat Apr 11 2020 06:21:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99637 * 2 1 4 4 H 1.48494 * 109.47228 * 0.02562 * 3 2 1 5 5 H 1.48501 * 109.46793 * 120.00355 * 3 2 1 6 6 H 1.48500 * 109.47000 * 240.00448 * 3 2 1 7 7 C 1.38811 * 120.00134 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99665 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99798 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99567 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46932 * 179.97438 * 10 9 7 12 12 H 1.09008 * 110.01604 * 53.61530 * 11 10 9 13 13 C 1.54259 * 110.03578 * 292.17092 * 11 10 9 14 14 C 1.54888 * 104.19544 * 217.10740 * 13 11 10 15 15 C 1.54888 * 102.74928 * 37.94077 * 14 13 11 16 16 C 1.53874 * 110.03179 * 175.00163 * 11 10 9 17 17 H 1.09005 * 110.03346 * 238.57542 * 16 11 10 18 18 N 1.46505 * 110.03223 * 359.97438 * 16 11 10 19 19 C 1.34771 * 120.00284 * 204.99689 * 18 16 11 20 20 O 1.21558 * 119.99595 * 0.02562 * 19 18 16 21 21 C 1.47842 * 120.00356 * 180.02562 * 19 18 16 22 22 C 1.40601 * 120.27612 * 359.72865 * 21 19 18 23 23 N 1.30819 * 121.51532 * 179.75938 * 22 21 19 24 24 C 1.33750 * 121.79706 * 0.50246 * 23 22 21 25 25 N 1.33893 * 120.61298 * 179.74225 * 24 23 22 26 26 C 1.31333 * 119.84350 * 180.02562 * 25 24 23 27 27 C 1.39766 * 120.77872 * 359.97438 * 26 25 24 28 28 N 1.31302 * 120.55156 * 0.02562 * 27 26 25 29 29 C 1.33665 * 119.70992 * 359.95474 * 28 27 26 30 30 C 1.38910 * 120.28069 * 179.97438 * 21 19 18 31 31 H 0.97005 * 119.99717 * 180.02562 * 1 2 3 32 32 H 0.97000 * 120.00607 * 0.02562 * 9 7 2 33 33 H 1.08998 * 109.47306 * 300.00481 * 10 9 7 34 34 H 1.08997 * 109.46860 * 60.00305 * 10 9 7 35 35 H 1.09003 * 110.48546 * 335.78245 * 13 11 10 36 36 H 1.08999 * 110.48909 * 98.42560 * 13 11 10 37 37 H 1.08998 * 110.75677 * 279.62374 * 14 13 11 38 38 H 1.09001 * 110.75711 * 156.25553 * 14 13 11 39 39 H 1.09002 * 110.48146 * 203.37818 * 15 14 13 40 40 H 1.08999 * 110.59917 * 80.79403 * 15 14 13 41 41 H 0.96998 * 119.99873 * 25.00760 * 18 16 11 42 42 H 1.08000 * 119.24147 * 0.02562 * 22 21 19 43 43 H 1.08007 * 119.61385 * 179.97438 * 26 25 24 44 44 H 1.07997 * 119.72167 * 180.02562 * 27 26 25 45 45 H 1.07997 * 120.99420 * 359.96271 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2851 2.7465 0.0006 5 1 3.1039 1.6964 1.2125 6 1 3.1038 1.6966 -1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0017 11 6 1.0640 -4.8197 -0.0008 12 1 0.3588 -4.7083 -0.8245 13 6 0.3065 -4.8663 1.3422 14 6 0.1442 -6.3787 1.6344 15 6 1.4893 -6.9682 1.1423 16 6 1.8160 -6.1561 -0.1279 17 1 1.4752 -6.6937 -1.0128 18 7 3.2585 -5.9142 -0.2123 19 6 4.0591 -6.8166 -0.8132 20 8 3.5843 -7.8310 -1.2856 21 6 5.5148 -6.5728 -0.8979 22 6 6.0695 -5.3988 -0.3585 23 7 7.3546 -5.1606 -0.4158 24 6 8.2043 -6.0142 -0.9974 25 7 9.5147 -5.7442 -1.0472 26 6 10.3355 -6.5928 -1.6225 27 6 9.8581 -7.7796 -2.1856 28 7 8.5776 -8.0675 -2.1499 29 6 7.7237 -7.2187 -1.5691 30 6 6.3454 -7.4992 -1.5154 31 1 -0.4850 -0.8401 0.0004 32 1 0.3556 -2.3881 -0.0005 33 1 2.6843 -3.7140 -0.8921 34 1 2.6855 -3.7148 0.8878 35 1 0.8915 -4.3868 2.1270 36 1 -0.6690 -4.3894 1.2467 37 1 -0.6897 -6.7942 1.0686 38 1 0.0133 -6.5540 2.7022 39 1 1.3769 -8.0252 0.9010 40 1 2.2665 -6.8300 1.8939 41 1 3.6373 -5.1047 0.1645 42 1 5.4203 -4.6790 0.1178 43 1 11.3919 -6.3711 -1.6609 44 1 10.5483 -8.4655 -2.6541 45 1 5.9457 -8.4077 -1.9411 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482677690.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:25 Heat of formation + Delta-G solvation = 40.007959 kcal Electronic energy + Delta-G solvation = -28815.068283 eV Core-core repulsion = 24832.183565 eV Total energy + Delta-G solvation = -3982.884718 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.89871 -41.48718 -39.77127 -38.91311 -36.57441 -36.19366 -35.00798 -33.30926 -33.22123 -32.36684 -30.01728 -28.98935 -27.00711 -26.30871 -26.05462 -24.49599 -24.06701 -23.07340 -21.67232 -20.61123 -20.51451 -19.77886 -19.25981 -19.05323 -17.72726 -17.43304 -16.87209 -16.59438 -16.34776 -16.20164 -16.04279 -15.76699 -15.73080 -15.62510 -15.16790 -14.87661 -14.66380 -14.44305 -14.03875 -13.96480 -13.57284 -13.14012 -12.98032 -12.90396 -12.82934 -12.61629 -12.32882 -12.03200 -11.97960 -11.89656 -11.82178 -11.76017 -11.55518 -11.26891 -11.18313 -10.91871 -10.67406 -10.43498 -10.16475 -9.97077 -9.09813 -8.37831 -5.32024 -1.31275 -0.99384 0.48712 1.14301 1.59526 1.68571 1.81655 1.84645 1.95596 2.31450 2.71109 2.75661 2.77952 2.86054 3.25376 3.34928 3.40353 3.41872 3.55279 3.61185 3.71084 3.77859 3.86202 4.02485 4.22894 4.29232 4.31432 4.41291 4.42876 4.47402 4.55024 4.57419 4.69499 4.72956 4.83427 4.91400 5.02626 5.15719 5.18349 5.19040 5.27749 5.40662 5.43502 5.60520 5.75353 6.25171 6.25653 6.51903 6.67876 6.90696 7.10718 8.01164 8.11579 9.14309 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009516 B = 0.003081 C = 0.002401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2941.617509 B = 9084.464842 C =11660.015324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.976 5.976 2 C -0.103 4.103 3 Si 1.124 2.876 4 H -0.295 1.295 5 H -0.276 1.276 6 H -0.280 1.280 7 C -0.333 4.333 8 H 0.069 0.931 9 N -0.751 5.751 10 C 0.160 3.840 11 C -0.102 4.102 12 H 0.074 0.926 13 C -0.112 4.112 14 C -0.112 4.112 15 C -0.125 4.125 16 C 0.154 3.846 17 H 0.089 0.911 18 N -0.707 5.707 19 C 0.571 3.429 20 O -0.559 6.559 21 C -0.182 4.182 22 C 0.191 3.809 23 N -0.481 5.481 24 C 0.252 3.748 25 N -0.459 5.459 26 C 0.134 3.866 27 C 0.094 3.906 28 N -0.430 5.430 29 C 0.003 3.997 30 C 0.041 3.959 31 H 0.245 0.755 32 H 0.361 0.639 33 H 0.021 0.979 34 H 0.030 0.970 35 H 0.059 0.941 36 H 0.058 0.942 37 H 0.078 0.922 38 H 0.082 0.918 39 H 0.077 0.923 40 H 0.074 0.926 41 H 0.410 0.590 42 H 0.187 0.813 43 H 0.236 0.764 44 H 0.237 0.763 45 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.962 -20.655 -1.159 27.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.294 4.294 3 Si 0.949 3.051 4 H -0.221 1.221 5 H -0.202 1.202 6 H -0.207 1.207 7 C -0.464 4.464 8 H 0.087 0.913 9 N -0.396 5.396 10 C 0.034 3.966 11 C -0.121 4.121 12 H 0.093 0.907 13 C -0.149 4.149 14 C -0.150 4.150 15 C -0.164 4.164 16 C 0.049 3.951 17 H 0.107 0.893 18 N -0.360 5.360 19 C 0.357 3.643 20 O -0.438 6.438 21 C -0.189 4.189 22 C 0.015 3.985 23 N -0.190 5.190 24 C 0.013 3.987 25 N -0.175 5.175 26 C -0.046 4.046 27 C -0.084 4.084 28 N -0.145 5.145 29 C -0.121 4.121 30 C 0.013 3.987 31 H 0.055 0.945 32 H 0.194 0.806 33 H 0.039 0.961 34 H 0.048 0.952 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.097 0.903 38 H 0.101 0.899 39 H 0.095 0.905 40 H 0.092 0.908 41 H 0.250 0.750 42 H 0.204 0.796 43 H 0.252 0.748 44 H 0.253 0.747 45 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 17.885 -18.891 -1.062 26.036 hybrid contribution -0.639 -1.618 -0.273 1.761 sum 17.246 -20.509 -1.335 26.829 Atomic orbital electron populations 1.70995 1.07183 1.27944 1.56291 1.27096 0.97111 1.04534 1.00689 0.82671 0.73413 0.71885 0.77135 1.22071 1.20240 1.20660 1.20385 0.92474 0.87042 1.46498 0.91286 1.42509 1.04840 1.01711 1.90544 1.20810 0.93925 0.84344 0.97537 1.22149 0.97379 0.93064 0.99534 0.90730 1.22317 0.99673 0.97462 0.95490 1.22438 0.96987 0.93531 1.02044 1.22730 0.98173 0.99534 0.95958 1.21670 0.78283 0.95062 1.00039 0.89285 1.46276 1.08238 1.23554 1.57968 1.17898 0.85471 0.83158 0.77763 1.90770 1.76282 1.28086 1.48691 1.21006 0.94758 0.97981 1.05177 1.23496 0.90400 0.93631 0.90999 1.67478 1.03899 1.30942 1.16674 1.20348 0.92645 0.90376 0.95329 1.68421 1.01319 1.32283 1.15452 1.25352 1.02883 0.88795 0.87556 1.25223 0.91997 0.97044 0.94119 1.68687 1.04925 1.28910 1.11962 1.20189 0.95781 0.94475 1.01648 1.21869 0.89548 0.98080 0.89167 0.94470 0.80637 0.96118 0.95213 0.92207 0.92286 0.90317 0.89900 0.90455 0.90762 0.75007 0.79591 0.74777 0.74675 0.81248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -60.62 13.70 21.65 0.30 -60.33 16 2 C -0.10 -5.91 5.50 84.86 0.47 -5.45 16 3 Si 1.12 51.78 29.92 68.60 2.05 53.84 16 4 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 5 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 6 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 7 C -0.33 -18.29 9.99 84.03 0.84 -17.45 16 8 H 0.07 3.67 7.83 -2.91 -0.02 3.64 16 9 N -0.75 -36.44 5.45 -343.44 -1.87 -38.31 16 10 C 0.16 5.86 4.19 86.38 0.36 6.22 16 11 C -0.10 -3.00 2.96 -10.07 -0.03 -3.03 16 12 H 0.07 2.34 8.14 -2.38 -0.02 2.32 16 13 C -0.11 -3.06 6.08 31.67 0.19 -2.87 16 14 C -0.11 -2.31 6.91 31.88 0.22 -2.09 16 15 C -0.13 -2.68 6.53 31.67 0.21 -2.47 16 16 C 0.15 3.88 3.22 45.71 0.15 4.03 16 17 H 0.09 2.38 7.56 -2.38 -0.02 2.36 16 18 N -0.71 -17.37 4.34 -441.97 -1.92 -19.29 16 19 C 0.57 14.91 7.77 86.79 0.67 15.59 16 20 O -0.56 -17.33 16.04 -3.90 -0.06 -17.39 16 21 C -0.18 -4.36 5.89 -20.00 -0.12 -4.48 16 22 C 0.19 4.62 10.69 85.42 0.91 5.53 16 23 N -0.48 -13.54 10.39 -192.75 -2.00 -15.55 16 24 C 0.25 6.54 7.60 134.96 1.03 7.56 16 25 N -0.46 -10.10 10.55 -193.09 -2.04 -12.14 16 26 C 0.13 1.34 11.21 85.14 0.95 2.29 16 27 C 0.09 0.82 11.22 85.14 0.96 1.78 16 28 N -0.43 -7.79 10.46 -187.99 -1.97 -9.76 16 29 C 0.00 0.08 6.59 40.34 0.27 0.34 16 30 C 0.04 0.96 9.68 23.05 0.22 1.18 16 31 H 0.24 15.08 6.77 -92.70 -0.63 14.45 16 32 H 0.36 18.32 6.38 -92.71 -0.59 17.72 16 33 H 0.02 0.78 7.42 -2.39 -0.02 0.76 16 34 H 0.03 1.04 7.10 -2.39 -0.02 1.03 16 35 H 0.06 1.80 7.76 -2.39 -0.02 1.78 16 36 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.07 1.55 8.05 -2.39 -0.02 1.53 16 41 H 0.41 9.55 3.93 -92.71 -0.36 9.19 16 42 H 0.19 3.77 6.38 -2.91 -0.02 3.75 16 43 H 0.24 -0.27 8.06 -2.91 -0.02 -0.29 16 44 H 0.24 -0.59 8.06 -2.91 -0.02 -0.61 16 45 H 0.17 3.68 7.70 -2.91 -0.02 3.65 16 Total: -1.00 -80.52 371.92 0.03 -80.49 By element: Atomic # 1 Polarization: 31.51 SS G_CDS: 0.24 Total: 31.75 kcal Atomic # 6 Polarization: -0.62 SS G_CDS: 7.30 Total: 6.68 kcal Atomic # 7 Polarization: -145.87 SS G_CDS: -9.50 Total: -155.37 kcal Atomic # 8 Polarization: -17.33 SS G_CDS: -0.06 Total: -17.39 kcal Atomic # 14 Polarization: 51.78 SS G_CDS: 2.05 Total: 53.84 kcal Total: -80.52 0.03 -80.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482677690.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.494 kcal (2) G-P(sol) polarization free energy of solvation -80.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds