Wall clock time and date at job start Sat Apr 11 2020 06:21:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86796 * 119.99955 * 2 1 4 4 H 1.48501 * 109.47507 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47065 * 300.00551 * 3 2 1 6 6 H 1.48504 * 109.47249 * 60.00319 * 3 2 1 7 7 C 1.38810 * 120.00215 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99940 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99931 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00130 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47238 * 180.02562 * 10 9 7 12 12 H 1.09002 * 110.01554 * 306.39088 * 11 10 9 13 13 C 1.54266 * 110.07584 * 67.80610 * 11 10 9 14 14 C 1.54893 * 104.19500 * 142.92024 * 13 11 10 15 15 C 1.54887 * 102.74533 * 322.05712 * 14 13 11 16 16 C 1.53872 * 110.03213 * 185.00094 * 11 10 9 17 17 H 1.09003 * 110.03622 * 121.37719 * 16 11 10 18 18 N 1.46498 * 110.03563 * 359.94537 * 16 11 10 19 19 C 1.34777 * 120.00421 * 156.37932 * 18 16 11 20 20 O 1.21551 * 119.99747 * 0.02562 * 19 18 16 21 21 C 1.47842 * 120.00051 * 180.02562 * 19 18 16 22 22 C 1.40598 * 120.28178 * 359.97438 * 21 19 18 23 23 N 1.30813 * 121.52444 * 180.02562 * 22 21 19 24 24 C 1.33757 * 121.79453 * 0.02562 * 23 22 21 25 25 N 1.33895 * 120.61846 * 180.02562 * 24 23 22 26 26 C 1.31331 * 119.84506 * 179.97438 * 25 24 23 27 27 C 1.39762 * 120.77797 * 359.97438 * 26 25 24 28 28 N 1.31304 * 120.55514 * 359.97438 * 27 26 25 29 29 C 1.33669 * 119.70631 * 0.04472 * 28 27 26 30 30 C 1.38902 * 120.27740 * 179.72811 * 21 19 18 31 31 H 0.97000 * 120.00322 * 359.97438 * 1 2 3 32 32 H 0.97006 * 120.00059 * 0.02562 * 9 7 2 33 33 H 1.08997 * 109.47298 * 59.99994 * 10 9 7 34 34 H 1.09007 * 109.47072 * 299.99613 * 10 9 7 35 35 H 1.09002 * 110.48438 * 261.59643 * 13 11 10 36 36 H 1.08998 * 110.48431 * 24.10471 * 13 11 10 37 37 H 1.09001 * 110.75228 * 203.74448 * 14 13 11 38 38 H 1.09000 * 110.75571 * 80.37081 * 14 13 11 39 39 H 1.09001 * 110.48816 * 279.26329 * 15 14 13 40 40 H 1.09004 * 110.48531 * 156.62545 * 15 14 13 41 41 H 0.97006 * 119.99781 * 336.38308 * 18 16 11 42 42 H 1.08003 * 119.23947 * 0.02562 * 22 21 19 43 43 H 1.07999 * 119.61606 * 180.02562 * 26 25 24 44 44 H 1.08002 * 119.72334 * 180.02562 * 27 26 25 45 45 H 1.08003 * 120.99888 * 359.97438 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8915 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 2.0582 -3.6568 -0.0005 11 6 1.0640 -4.8197 -0.0012 12 1 0.3593 -4.7086 0.8230 13 6 0.3044 -4.8662 -1.3431 14 6 0.1414 -6.3787 -1.6350 15 6 1.4872 -6.9682 -1.1449 16 6 1.8160 -6.1562 0.1248 17 1 1.4765 -6.6937 1.0102 18 7 3.2586 -5.9145 0.2063 19 6 4.0639 -6.8297 0.7812 20 8 3.5932 -7.8559 1.2317 21 6 5.5196 -6.5855 0.8640 22 6 6.0705 -5.4009 0.3443 23 7 7.3549 -5.1602 0.4040 24 6 8.2091 -6.0261 0.9604 25 7 9.5195 -5.7555 1.0092 26 6 10.3446 -6.6164 1.5596 27 6 9.8718 -7.8164 2.0979 28 7 8.5913 -8.1048 2.0634 29 6 7.7331 -7.2437 1.5079 30 6 6.3541 -7.5223 1.4603 31 1 -0.4850 0.8400 0.0004 32 1 0.3556 -2.3881 -0.0005 33 1 2.6848 -3.7145 0.8894 34 1 2.6848 -3.7145 -0.8906 35 1 -0.6709 -4.3892 -1.2461 36 1 0.8872 -4.3846 -2.1282 37 1 0.0089 -6.5538 -2.7027 38 1 -0.6917 -6.7940 -1.0679 39 1 2.2621 -6.8283 -1.8986 40 1 1.3752 -8.0253 -0.9034 41 1 3.6344 -5.0957 -0.1535 42 1 5.4181 -4.6728 -0.1147 43 1 11.4008 -6.3941 1.5973 44 1 10.5655 -8.5119 2.5468 45 1 5.9574 -8.4388 1.8715 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482677691.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:28 Heat of formation + Delta-G solvation = 65.411241 kcal Electronic energy + Delta-G solvation = -28769.865326 eV Core-core repulsion = 24788.082177 eV Total energy + Delta-G solvation = -3981.783149 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.10632 -40.41058 -38.75773 -37.83284 -35.43383 -34.43279 -33.89852 -32.34863 -31.58005 -31.45517 -28.64661 -27.94035 -26.16566 -25.47064 -24.60665 -23.22402 -22.59777 -22.05890 -20.58187 -19.67959 -19.22823 -18.78537 -18.18307 -17.33248 -16.73217 -16.13169 -16.00326 -15.46159 -15.40438 -15.10258 -14.95937 -14.67001 -14.54609 -13.90236 -13.71130 -13.57544 -13.28950 -13.12559 -13.06582 -12.96054 -12.33536 -12.20984 -12.17457 -11.72624 -11.39648 -11.13919 -10.90458 -10.89306 -10.85882 -10.54678 -10.46150 -10.33703 -10.18568 -9.98272 -9.77061 -9.73935 -9.63611 -9.19013 -9.10943 -8.91277 -6.98826 -5.81482 -3.10836 -0.52885 -0.21778 1.29529 1.96626 2.84308 2.89886 3.06349 3.41257 3.47767 3.49353 3.51942 3.58909 3.59762 4.12973 4.17023 4.31684 4.42869 4.53654 4.55295 4.68514 4.75508 4.78783 5.03228 5.07871 5.37203 5.40196 5.44564 5.49188 5.56609 5.60600 5.68443 5.79803 5.86006 5.86879 6.00177 6.07472 6.15902 6.22177 6.37854 6.46822 6.47979 6.53202 6.62152 6.73793 6.97163 7.33732 7.47084 7.65272 7.98550 8.36772 9.48840 10.04848 10.39255 11.41144 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009530 B = 0.003069 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2937.511449 B = 9121.416445 C =11705.179644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.011 4.011 3 Si 0.905 3.095 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.243 4.243 8 H 0.071 0.929 9 N -0.727 5.727 10 C 0.155 3.845 11 C -0.108 4.108 12 H 0.085 0.915 13 C -0.112 4.112 14 C -0.124 4.124 15 C -0.132 4.132 16 C 0.149 3.851 17 H 0.093 0.907 18 N -0.710 5.710 19 C 0.564 3.436 20 O -0.533 6.533 21 C -0.176 4.176 22 C 0.195 3.805 23 N -0.451 5.451 24 C 0.273 3.727 25 N -0.417 5.417 26 C 0.113 3.887 27 C 0.072 3.928 28 N -0.405 5.405 29 C 0.017 3.983 30 C 0.039 3.961 31 H 0.255 0.745 32 H 0.385 0.615 33 H 0.021 0.979 34 H 0.017 0.983 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.407 0.593 42 H 0.178 0.822 43 H 0.185 0.815 44 H 0.184 0.816 45 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.667 -19.029 0.894 24.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.208 4.208 3 Si 0.736 3.264 4 H -0.204 1.204 5 H -0.218 1.218 6 H -0.219 1.219 7 C -0.374 4.374 8 H 0.089 0.911 9 N -0.372 5.372 10 C 0.027 3.973 11 C -0.128 4.128 12 H 0.103 0.897 13 C -0.150 4.150 14 C -0.162 4.162 15 C -0.171 4.171 16 C 0.044 3.956 17 H 0.111 0.889 18 N -0.364 5.364 19 C 0.349 3.651 20 O -0.410 6.410 21 C -0.183 4.183 22 C 0.017 3.983 23 N -0.160 5.160 24 C 0.034 3.966 25 N -0.131 5.131 26 C -0.067 4.067 27 C -0.105 4.105 28 N -0.119 5.119 29 C -0.110 4.110 30 C 0.011 3.989 31 H 0.065 0.935 32 H 0.219 0.781 33 H 0.038 0.962 34 H 0.035 0.965 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.247 0.753 42 H 0.195 0.805 43 H 0.202 0.798 44 H 0.201 0.799 45 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 14.657 -18.775 0.822 23.833 hybrid contribution 0.143 0.708 0.234 0.759 sum 14.800 -18.067 1.056 23.379 Atomic orbital electron populations 1.69666 1.05128 1.25634 1.57533 1.24737 0.95509 0.97733 1.02788 0.86143 0.78893 0.84107 0.77210 1.20441 1.21829 1.21856 1.19252 0.91055 0.84092 1.42972 0.91082 1.42310 1.05900 0.99633 1.89308 1.20711 0.93504 0.85867 0.97260 1.22236 0.98023 0.93226 0.99283 0.89709 1.22366 1.00881 0.95123 0.96592 1.22491 0.96715 0.96262 1.00763 1.22773 0.97983 0.99423 0.96899 1.21751 0.78240 0.96413 0.99153 0.88928 1.46348 1.08360 1.22255 1.59412 1.17804 0.85010 0.83876 0.78416 1.90787 1.75949 1.26545 1.47733 1.21216 0.95692 0.97284 1.04096 1.23415 0.90645 0.93557 0.90651 1.67519 1.03064 1.30130 1.15267 1.20140 0.91903 0.89746 0.94858 1.68364 1.01412 1.30634 1.12714 1.24365 1.01319 0.89954 0.91022 1.24247 0.92746 0.96967 0.96545 1.68604 1.03335 1.29359 1.10644 1.20210 0.95435 0.94098 1.01214 1.21779 0.89194 0.98404 0.89479 0.93509 0.78090 0.96153 0.96504 0.91088 0.90896 0.91543 0.91477 0.91216 0.91321 0.75304 0.80525 0.79779 0.79919 0.81565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.52 13.06 55.49 0.72 -26.79 16 2 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 3 Si 0.91 22.05 29.55 -169.99 -5.02 17.03 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 7 C -0.24 -6.51 9.99 -15.06 -0.15 -6.66 16 8 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 9 N -0.73 -17.26 5.45 -59.91 -0.33 -17.58 16 10 C 0.15 2.76 4.18 -4.04 -0.02 2.75 16 11 C -0.11 -1.59 2.96 -89.50 -0.26 -1.86 16 12 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 13 C -0.11 -1.56 6.09 -25.07 -0.15 -1.71 16 14 C -0.12 -1.40 6.91 -24.74 -0.17 -1.57 16 15 C -0.13 -1.52 6.52 -25.07 -0.16 -1.68 16 16 C 0.15 1.91 3.20 -66.81 -0.21 1.69 16 17 H 0.09 1.25 7.61 -51.93 -0.40 0.85 16 18 N -0.71 -8.69 4.38 -53.67 -0.24 -8.92 16 19 C 0.56 7.27 7.77 -12.33 -0.10 7.17 16 20 O -0.53 -8.20 16.06 5.32 0.09 -8.12 16 21 C -0.18 -2.04 5.88 -104.83 -0.62 -2.66 16 22 C 0.20 2.26 10.69 -17.10 -0.18 2.08 16 23 N -0.45 -6.18 10.39 -12.27 -0.13 -6.31 16 24 C 0.27 3.56 7.60 -157.60 -1.20 2.36 16 25 N -0.42 -4.87 10.55 -12.39 -0.13 -5.01 16 26 C 0.11 0.77 11.21 -17.20 -0.19 0.58 16 27 C 0.07 0.46 11.22 -17.21 -0.19 0.26 16 28 N -0.40 -4.06 10.46 -10.77 -0.11 -4.17 16 29 C 0.02 0.20 6.59 -84.78 -0.56 -0.36 16 30 C 0.04 0.45 9.68 -38.38 -0.37 0.08 16 31 H 0.26 7.30 8.31 -40.82 -0.34 6.97 16 32 H 0.39 9.71 7.55 -40.82 -0.31 9.40 16 33 H 0.02 0.37 7.40 -51.93 -0.38 -0.01 16 34 H 0.02 0.30 7.12 -51.92 -0.37 -0.07 16 35 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 36 H 0.07 1.10 7.76 -51.93 -0.40 0.70 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.07 0.79 8.05 -51.93 -0.42 0.37 16 40 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 41 H 0.41 4.68 3.87 -40.82 -0.16 4.53 16 42 H 0.18 1.70 6.38 -52.48 -0.33 1.36 16 43 H 0.19 0.41 8.06 -52.49 -0.42 -0.01 16 44 H 0.18 0.33 8.06 -52.49 -0.42 -0.09 16 45 H 0.17 1.76 7.70 -52.48 -0.40 1.36 16 LS Contribution 373.63 15.07 5.63 5.63 Total: -1.00 -34.87 373.63 -9.83 -44.70 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -5.68 Total: 9.49 kcal Atomic # 6 Polarization: 4.70 SS G_CDS: -4.64 Total: 0.06 kcal Atomic # 7 Polarization: -68.58 SS G_CDS: -0.21 Total: -68.79 kcal Atomic # 8 Polarization: -8.20 SS G_CDS: 0.09 Total: -8.12 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.87 -9.83 -44.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482677691.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.113 kcal (2) G-P(sol) polarization free energy of solvation -34.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds