Wall clock time and date at job start Sat Apr 11 2020 06:21:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86796 * 119.99955 * 2 1 4 4 H 1.48501 * 109.47507 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47065 * 300.00551 * 3 2 1 6 6 H 1.48504 * 109.47249 * 60.00319 * 3 2 1 7 7 C 1.38810 * 120.00215 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99940 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99931 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00130 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47238 * 180.02562 * 10 9 7 12 12 H 1.09002 * 110.01554 * 306.39088 * 11 10 9 13 13 C 1.54266 * 110.07584 * 67.80610 * 11 10 9 14 14 C 1.54893 * 104.19500 * 142.92024 * 13 11 10 15 15 C 1.54887 * 102.74533 * 322.05712 * 14 13 11 16 16 C 1.53872 * 110.03213 * 185.00094 * 11 10 9 17 17 H 1.09003 * 110.03622 * 121.37719 * 16 11 10 18 18 N 1.46498 * 110.03563 * 359.94537 * 16 11 10 19 19 C 1.34777 * 120.00421 * 156.37932 * 18 16 11 20 20 O 1.21551 * 119.99747 * 0.02562 * 19 18 16 21 21 C 1.47842 * 120.00051 * 180.02562 * 19 18 16 22 22 C 1.40598 * 120.28178 * 359.97438 * 21 19 18 23 23 N 1.30813 * 121.52444 * 180.02562 * 22 21 19 24 24 C 1.33757 * 121.79453 * 0.02562 * 23 22 21 25 25 N 1.33895 * 120.61846 * 180.02562 * 24 23 22 26 26 C 1.31331 * 119.84506 * 179.97438 * 25 24 23 27 27 C 1.39762 * 120.77797 * 359.97438 * 26 25 24 28 28 N 1.31304 * 120.55514 * 359.97438 * 27 26 25 29 29 C 1.33669 * 119.70631 * 0.04472 * 28 27 26 30 30 C 1.38902 * 120.27740 * 179.72811 * 21 19 18 31 31 H 0.97000 * 120.00322 * 359.97438 * 1 2 3 32 32 H 0.97006 * 120.00059 * 0.02562 * 9 7 2 33 33 H 1.08997 * 109.47298 * 59.99994 * 10 9 7 34 34 H 1.09007 * 109.47072 * 299.99613 * 10 9 7 35 35 H 1.09002 * 110.48438 * 261.59643 * 13 11 10 36 36 H 1.08998 * 110.48431 * 24.10471 * 13 11 10 37 37 H 1.09001 * 110.75228 * 203.74448 * 14 13 11 38 38 H 1.09000 * 110.75571 * 80.37081 * 14 13 11 39 39 H 1.09001 * 110.48816 * 279.26329 * 15 14 13 40 40 H 1.09004 * 110.48531 * 156.62545 * 15 14 13 41 41 H 0.97006 * 119.99781 * 336.38308 * 18 16 11 42 42 H 1.08003 * 119.23947 * 0.02562 * 22 21 19 43 43 H 1.07999 * 119.61606 * 180.02562 * 26 25 24 44 44 H 1.08002 * 119.72334 * 180.02562 * 27 26 25 45 45 H 1.08003 * 120.99888 * 359.97438 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8915 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 2.0582 -3.6568 -0.0005 11 6 1.0640 -4.8197 -0.0012 12 1 0.3593 -4.7086 0.8230 13 6 0.3044 -4.8662 -1.3431 14 6 0.1414 -6.3787 -1.6350 15 6 1.4872 -6.9682 -1.1449 16 6 1.8160 -6.1562 0.1248 17 1 1.4765 -6.6937 1.0102 18 7 3.2586 -5.9145 0.2063 19 6 4.0639 -6.8297 0.7812 20 8 3.5932 -7.8559 1.2317 21 6 5.5196 -6.5855 0.8640 22 6 6.0705 -5.4009 0.3443 23 7 7.3549 -5.1602 0.4040 24 6 8.2091 -6.0261 0.9604 25 7 9.5195 -5.7555 1.0092 26 6 10.3446 -6.6164 1.5596 27 6 9.8718 -7.8164 2.0979 28 7 8.5913 -8.1048 2.0634 29 6 7.7331 -7.2437 1.5079 30 6 6.3541 -7.5223 1.4603 31 1 -0.4850 0.8400 0.0004 32 1 0.3556 -2.3881 -0.0005 33 1 2.6848 -3.7145 0.8894 34 1 2.6848 -3.7145 -0.8906 35 1 -0.6709 -4.3892 -1.2461 36 1 0.8872 -4.3846 -2.1282 37 1 0.0089 -6.5538 -2.7027 38 1 -0.6917 -6.7940 -1.0679 39 1 2.2621 -6.8283 -1.8986 40 1 1.3752 -8.0253 -0.9034 41 1 3.6344 -5.0957 -0.1535 42 1 5.4181 -4.6728 -0.1147 43 1 11.4008 -6.3941 1.5973 44 1 10.5655 -8.5119 2.5468 45 1 5.9574 -8.4388 1.8715 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482677691.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:28 Heat of formation + Delta-G solvation = 40.629601 kcal Electronic energy + Delta-G solvation = -28770.939939 eV Core-core repulsion = 24788.082177 eV Total energy + Delta-G solvation = -3982.857762 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.87285 -41.43096 -39.70774 -38.85839 -36.24668 -36.14659 -34.94817 -33.28851 -33.19185 -32.33766 -30.17257 -28.92287 -26.98653 -26.35420 -26.19118 -24.24922 -24.03007 -23.02249 -21.59069 -20.56833 -20.41906 -19.71684 -19.06684 -19.02940 -17.67462 -17.23383 -16.84008 -16.55890 -16.39613 -16.21458 -15.98088 -15.75776 -15.69308 -15.23251 -15.08416 -14.79455 -14.56029 -14.37411 -14.01047 -13.93677 -13.46255 -13.15416 -13.06393 -12.88633 -12.86985 -12.77962 -12.36599 -12.11772 -11.99660 -11.91020 -11.77222 -11.70397 -11.52459 -11.43228 -11.21015 -10.92718 -10.64508 -10.40743 -10.10863 -9.94893 -8.97416 -7.93684 -5.21495 -1.28661 -0.96766 0.51111 1.17539 1.48372 1.49317 1.58627 1.86942 1.99538 2.34081 2.56713 2.78085 2.80402 2.88866 3.29567 3.39836 3.41431 3.47654 3.59304 3.69398 3.73819 3.87810 3.89132 4.19273 4.26553 4.30753 4.40948 4.50246 4.51815 4.55568 4.59227 4.68901 4.75200 4.77942 4.92290 5.00536 5.09362 5.20547 5.24842 5.26777 5.37785 5.47685 5.51193 5.54482 5.77575 6.27412 6.28042 6.32425 6.70257 6.96286 7.36118 8.11806 8.33927 9.30046 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009530 B = 0.003069 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2937.511449 B = 9121.416445 C =11705.179644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.074 4.074 3 Si 0.967 3.033 4 H -0.266 1.266 5 H -0.294 1.294 6 H -0.297 1.297 7 C -0.240 4.240 8 H 0.079 0.921 9 N -0.740 5.740 10 C 0.154 3.846 11 C -0.101 4.101 12 H 0.075 0.925 13 C -0.111 4.111 14 C -0.113 4.113 15 C -0.125 4.125 16 C 0.154 3.846 17 H 0.088 0.912 18 N -0.706 5.706 19 C 0.570 3.430 20 O -0.559 6.559 21 C -0.181 4.181 22 C 0.192 3.808 23 N -0.481 5.481 24 C 0.251 3.749 25 N -0.460 5.460 26 C 0.133 3.867 27 C 0.093 3.907 28 N -0.430 5.430 29 C 0.003 3.997 30 C 0.040 3.960 31 H 0.250 0.750 32 H 0.375 0.625 33 H 0.023 0.977 34 H 0.032 0.968 35 H 0.058 0.942 36 H 0.060 0.940 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.073 0.927 40 H 0.075 0.925 41 H 0.411 0.589 42 H 0.189 0.811 43 H 0.235 0.765 44 H 0.237 0.763 45 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.460 -20.613 1.058 27.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.266 4.266 3 Si 0.796 3.204 4 H -0.190 1.190 5 H -0.222 1.222 6 H -0.224 1.224 7 C -0.371 4.371 8 H 0.097 0.903 9 N -0.382 5.382 10 C 0.027 3.973 11 C -0.120 4.120 12 H 0.093 0.907 13 C -0.149 4.149 14 C -0.151 4.151 15 C -0.164 4.164 16 C 0.050 3.950 17 H 0.106 0.894 18 N -0.360 5.360 19 C 0.357 3.643 20 O -0.439 6.439 21 C -0.188 4.188 22 C 0.015 3.985 23 N -0.190 5.190 24 C 0.013 3.987 25 N -0.175 5.175 26 C -0.047 4.047 27 C -0.085 4.085 28 N -0.145 5.145 29 C -0.121 4.121 30 C 0.013 3.987 31 H 0.059 0.941 32 H 0.207 0.793 33 H 0.041 0.959 34 H 0.050 0.950 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.100 0.900 38 H 0.095 0.905 39 H 0.092 0.908 40 H 0.094 0.906 41 H 0.251 0.749 42 H 0.206 0.794 43 H 0.251 0.749 44 H 0.253 0.747 45 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 17.447 -20.377 0.968 26.843 hybrid contribution -0.448 1.071 0.265 1.191 sum 16.999 -19.306 1.234 25.753 Atomic orbital electron populations 1.69809 1.06525 1.25860 1.59744 1.25489 0.96299 1.00888 1.03972 0.85167 0.78396 0.80285 0.76507 1.19013 1.22157 1.22408 1.19672 0.91604 0.85234 1.40631 0.90323 1.42511 1.05673 1.00875 1.89190 1.20891 0.94028 0.84709 0.97667 1.22123 0.97386 0.92940 0.99543 0.90680 1.22306 0.99780 0.97157 0.95611 1.22443 0.96935 0.93770 1.01932 1.22729 0.98168 0.99450 0.96040 1.21671 0.78249 0.95220 0.99896 0.89397 1.46289 1.08139 1.22318 1.59210 1.17888 0.85419 0.83352 0.77670 1.90768 1.76504 1.27614 1.49002 1.21019 0.94804 0.97755 1.05233 1.23529 0.90438 0.93773 0.90729 1.67484 1.03831 1.31257 1.16478 1.20350 0.92629 0.90221 0.95528 1.68416 1.01268 1.32758 1.15057 1.25333 1.02835 0.88828 0.87668 1.25210 0.92081 0.97217 0.93950 1.68688 1.04796 1.29344 1.11655 1.20198 0.95773 0.94236 1.01899 1.21870 0.89501 0.98307 0.89069 0.94119 0.79313 0.95904 0.95041 0.92341 0.92082 0.90024 0.90453 0.90786 0.90629 0.74912 0.79388 0.74852 0.74734 0.81280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.43 13.06 21.65 0.28 -58.15 16 2 C -0.07 -4.19 5.50 84.86 0.47 -3.72 16 3 Si 0.97 45.75 29.55 68.60 2.03 47.77 16 4 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 5 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 6 H -0.30 -14.16 7.11 99.48 0.71 -13.46 16 7 C -0.24 -12.88 9.99 84.03 0.84 -12.04 16 8 H 0.08 4.03 7.83 -2.91 -0.02 4.01 16 9 N -0.74 -35.51 5.45 -343.45 -1.87 -37.38 16 10 C 0.15 5.48 4.18 86.38 0.36 5.84 16 11 C -0.10 -2.94 2.96 -10.07 -0.03 -2.97 16 12 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 13 C -0.11 -3.05 6.09 31.67 0.19 -2.86 16 14 C -0.11 -2.35 6.91 31.89 0.22 -2.13 16 15 C -0.13 -2.68 6.52 31.67 0.21 -2.48 16 16 C 0.15 3.85 3.20 45.72 0.15 4.00 16 17 H 0.09 2.33 7.61 -2.39 -0.02 2.31 16 18 N -0.71 -17.03 4.38 -441.98 -1.94 -18.97 16 19 C 0.57 14.71 7.77 86.79 0.67 15.38 16 20 O -0.56 -17.21 16.06 -3.88 -0.06 -17.28 16 21 C -0.18 -4.28 5.88 -20.00 -0.12 -4.39 16 22 C 0.19 4.55 10.69 85.42 0.91 5.47 16 23 N -0.48 -13.44 10.39 -192.75 -2.00 -15.44 16 24 C 0.25 6.50 7.60 134.96 1.03 7.53 16 25 N -0.46 -10.11 10.55 -193.10 -2.04 -12.15 16 26 C 0.13 1.34 11.21 85.14 0.95 2.29 16 27 C 0.09 0.82 11.22 85.14 0.96 1.78 16 28 N -0.43 -7.80 10.46 -187.98 -1.97 -9.76 16 29 C 0.00 0.08 6.59 40.34 0.27 0.34 16 30 C 0.04 0.93 9.68 23.05 0.22 1.15 16 31 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 32 H 0.37 19.38 7.55 -92.70 -0.70 18.68 16 33 H 0.02 0.83 7.40 -2.39 -0.02 0.81 16 34 H 0.03 1.06 7.12 -2.38 -0.02 1.05 16 35 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.06 1.82 7.76 -2.39 -0.02 1.81 16 37 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.07 1.54 8.05 -2.39 -0.02 1.52 16 40 H 0.08 1.57 8.14 -2.38 -0.02 1.55 16 41 H 0.41 9.29 3.87 -92.70 -0.36 8.93 16 42 H 0.19 3.68 6.38 -2.91 -0.02 3.66 16 43 H 0.24 -0.23 8.06 -2.91 -0.02 -0.25 16 44 H 0.24 -0.56 8.06 -2.91 -0.02 -0.58 16 45 H 0.17 3.65 7.70 -2.91 -0.02 3.63 16 Total: -1.00 -77.69 373.63 -0.27 -77.97 By element: Atomic # 1 Polarization: 30.21 SS G_CDS: -0.01 Total: 30.21 kcal Atomic # 6 Polarization: 5.89 SS G_CDS: 7.30 Total: 13.18 kcal Atomic # 7 Polarization: -142.33 SS G_CDS: -9.53 Total: -151.86 kcal Atomic # 8 Polarization: -17.21 SS G_CDS: -0.06 Total: -17.28 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.77 kcal Total: -77.69 -0.27 -77.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482677691.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.598 kcal (2) G-P(sol) polarization free energy of solvation -77.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds