Wall clock time and date at job start Sat Apr 11 2020 06:21:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86804 * 120.00000 * 2 1 4 4 H 1.48506 * 109.46361 * 269.99371 * 3 2 1 5 5 H 1.48501 * 109.47279 * 29.98895 * 3 2 1 6 6 H 1.48495 * 109.47095 * 149.99654 * 3 2 1 7 7 C 1.38813 * 119.99853 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99509 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00349 * 0.02562 * 7 2 1 10 10 C 1.46493 * 120.00190 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47312 * 179.97438 * 10 9 7 12 12 H 1.09008 * 110.81163 * 51.66530 * 11 10 9 13 13 C 1.54892 * 110.75651 * 288.33220 * 11 10 9 14 14 C 1.54265 * 104.19387 * 203.73855 * 13 11 10 15 15 C 1.53875 * 106.59954 * 23.60909 * 14 13 11 16 16 C 1.54273 * 106.59983 * 359.97438 * 15 14 13 17 17 H 1.09000 * 110.48349 * 95.19745 * 16 15 14 18 18 N 1.46499 * 110.48727 * 217.71231 * 16 15 14 19 19 C 1.34777 * 119.99665 * 273.82192 * 18 16 15 20 20 O 1.21553 * 120.00289 * 359.72074 * 19 18 16 21 21 C 1.47846 * 119.99557 * 179.72375 * 19 18 16 22 22 C 1.40597 * 120.28214 * 359.97438 * 21 19 18 23 23 N 1.30812 * 121.52242 * 179.97438 * 22 21 19 24 24 C 1.33759 * 121.79529 * 0.02562 * 23 22 21 25 25 N 1.33893 * 120.61860 * 180.02562 * 24 23 22 26 26 C 1.31330 * 119.84714 * 179.97438 * 25 24 23 27 27 C 1.39762 * 120.77586 * 0.02664 * 26 25 24 28 28 N 1.31305 * 120.55687 * 359.97438 * 27 26 25 29 29 C 1.33670 * 119.70165 * 359.95446 * 28 27 26 30 30 C 1.38907 * 120.27496 * 179.72117 * 21 19 18 31 31 H 0.96997 * 119.99975 * 0.02562 * 1 2 3 32 32 H 0.96997 * 119.99341 * 359.97438 * 9 7 2 33 33 H 1.09000 * 109.47112 * 59.99665 * 10 9 7 34 34 H 1.09003 * 109.47357 * 300.00002 * 10 9 7 35 35 H 1.09002 * 110.48584 * 85.06271 * 13 11 10 36 36 H 1.09001 * 110.48549 * 322.41740 * 13 11 10 37 37 H 1.08996 * 110.03696 * 264.32187 * 14 13 11 38 38 H 1.08999 * 110.03143 * 142.88926 * 14 13 11 39 39 H 1.08992 * 110.03524 * 240.71396 * 15 14 13 40 40 H 1.09000 * 110.03071 * 119.28207 * 15 14 13 41 41 H 0.97001 * 119.99790 * 93.53905 * 18 16 15 42 42 H 1.07997 * 119.23970 * 0.02562 * 22 21 19 43 43 H 1.07999 * 119.61355 * 179.97438 * 26 25 24 44 44 H 1.08003 * 119.72366 * 179.97438 * 27 26 25 45 45 H 1.07995 * 121.00082 * 0.02562 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0462 -1.4002 5 1 1.4476 2.6528 0.6998 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0639 -4.8197 0.0012 12 1 0.3315 -4.7036 -0.7978 13 6 0.3614 -4.9406 1.3764 14 6 -0.0917 -6.4138 1.4414 15 6 0.8254 -7.1984 0.4868 16 6 1.8034 -6.1744 -0.1256 17 1 2.7369 -6.1551 0.4368 18 7 2.0605 -6.4893 -1.5331 19 6 3.0300 -7.3661 -1.8612 20 8 3.6945 -7.8918 -0.9897 21 6 3.2853 -7.6884 -3.2813 22 6 2.5200 -7.0841 -4.2942 23 7 2.7255 -7.3512 -5.5582 24 6 3.6713 -8.2110 -5.9521 25 7 3.8618 -8.4665 -7.2526 26 6 4.7952 -9.3131 -7.6225 27 6 5.5960 -9.9543 -6.6733 28 7 5.4292 -9.7209 -5.3920 29 6 4.4861 -8.8620 -4.9925 30 6 4.2869 -8.5869 -3.6264 31 1 -0.4850 0.8400 -0.0004 32 1 0.3556 -2.3880 0.0005 33 1 2.6848 -3.7145 0.8905 34 1 2.6848 -3.7146 -0.8895 35 1 -0.4997 -4.2742 1.4248 36 1 1.0611 -4.7207 2.1827 37 1 -1.1289 -6.5001 1.1178 38 1 0.0156 -6.7929 2.4578 39 1 0.2333 -7.6654 -0.3001 40 1 1.3776 -7.9581 1.0399 41 1 1.5302 -6.0697 -2.2285 42 1 1.7451 -6.3827 -4.0224 43 1 4.9453 -9.5167 -8.6724 44 1 6.3584 -10.6477 -6.9964 45 1 4.8923 -9.0628 -2.8692 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482677692.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:31 Heat of formation + Delta-G solvation = 56.239016 kcal Electronic energy + Delta-G solvation = -28324.662704 eV Core-core repulsion = 24342.481817 eV Total energy + Delta-G solvation = -3982.180887 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.16408 -40.34136 -38.72876 -37.83366 -35.49273 -34.55155 -33.87550 -32.41119 -31.63331 -31.43369 -28.65138 -27.97834 -26.25026 -25.56110 -24.49583 -23.28524 -22.35791 -21.94188 -20.41821 -20.13843 -19.38743 -18.77903 -18.19787 -17.28963 -16.76005 -16.47954 -16.06147 -15.59397 -15.30570 -15.10868 -14.82818 -14.69877 -14.46691 -13.83750 -13.72085 -13.38542 -13.32199 -13.22939 -13.17969 -12.90474 -12.37607 -12.23028 -12.19920 -12.02010 -11.35548 -11.21461 -11.00549 -10.92656 -10.78510 -10.51812 -10.37442 -10.29341 -10.22894 -10.01201 -9.83100 -9.72552 -9.68988 -9.25686 -9.12397 -8.88320 -6.93315 -5.77990 -3.06367 -0.58790 -0.27978 1.23800 1.90213 2.76935 2.84750 2.99339 3.43116 3.46175 3.48652 3.50004 3.53004 3.53510 4.05813 4.10840 4.25587 4.37557 4.48338 4.53359 4.69075 4.73139 4.77316 4.96675 5.02563 5.30781 5.37899 5.41861 5.51416 5.56774 5.60666 5.69079 5.77129 5.80038 5.87894 6.03682 6.11226 6.15746 6.25544 6.40752 6.41535 6.51691 6.52349 6.73273 6.85353 6.91384 7.27485 7.39599 7.69433 7.93335 8.41124 9.52599 10.09800 10.44638 11.44831 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011354 B = 0.002477 C = 0.002154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2465.441234 B =11300.746173 C =12998.602597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.013 4.013 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.239 4.239 8 H 0.069 0.931 9 N -0.730 5.730 10 C 0.161 3.839 11 C -0.103 4.103 12 H 0.082 0.918 13 C -0.111 4.111 14 C -0.123 4.123 15 C -0.132 4.132 16 C 0.146 3.854 17 H 0.098 0.902 18 N -0.708 5.708 19 C 0.565 3.435 20 O -0.528 6.528 21 C -0.176 4.176 22 C 0.195 3.805 23 N -0.453 5.453 24 C 0.273 3.727 25 N -0.417 5.417 26 C 0.114 3.886 27 C 0.073 3.927 28 N -0.405 5.405 29 C 0.017 3.983 30 C 0.040 3.960 31 H 0.255 0.745 32 H 0.384 0.616 33 H 0.021 0.979 34 H 0.018 0.982 35 H 0.075 0.925 36 H 0.070 0.930 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.065 0.935 40 H 0.067 0.933 41 H 0.402 0.598 42 H 0.178 0.822 43 H 0.186 0.814 44 H 0.184 0.816 45 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.918 -23.460 -10.615 26.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.209 4.209 3 Si 0.737 3.263 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.370 4.370 8 H 0.087 0.913 9 N -0.375 5.375 10 C 0.033 3.967 11 C -0.122 4.122 12 H 0.101 0.899 13 C -0.149 4.149 14 C -0.161 4.161 15 C -0.171 4.171 16 C 0.042 3.958 17 H 0.116 0.884 18 N -0.358 5.358 19 C 0.350 3.650 20 O -0.405 6.405 21 C -0.183 4.183 22 C 0.017 3.983 23 N -0.162 5.162 24 C 0.033 3.967 25 N -0.132 5.132 26 C -0.066 4.066 27 C -0.104 4.104 28 N -0.119 5.119 29 C -0.109 4.109 30 C 0.012 3.988 31 H 0.065 0.935 32 H 0.218 0.782 33 H 0.039 0.961 34 H 0.036 0.964 35 H 0.094 0.906 36 H 0.089 0.911 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.086 0.914 41 H 0.238 0.762 42 H 0.195 0.805 43 H 0.203 0.797 44 H 0.201 0.799 45 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 5.930 -23.214 -10.508 26.162 hybrid contribution 0.429 0.782 0.091 0.896 sum 6.359 -22.433 -10.417 25.538 Atomic orbital electron populations 1.69651 1.05071 1.25642 1.57850 1.24724 0.95521 0.97649 1.03042 0.86206 0.78684 0.83885 0.77526 1.21735 1.21762 1.20787 1.19218 0.91012 0.84181 1.42586 0.91289 1.42315 1.05812 0.99843 1.89493 1.20651 0.92904 0.85178 0.97952 1.22576 0.97915 0.93008 0.98700 0.89931 1.22293 1.00814 0.95241 0.96532 1.22124 0.99020 0.95836 0.99129 1.22518 0.97450 0.98057 0.99094 1.22011 0.99415 0.94307 0.80068 0.88382 1.45984 1.36025 1.44151 1.09672 1.17774 0.80483 0.79718 0.86994 1.90807 1.48286 1.51840 1.49592 1.21212 0.99924 1.01429 0.95751 1.23375 0.95085 0.93633 0.86240 1.67498 1.16620 1.13665 1.18410 1.20120 0.92675 0.93676 0.90208 1.68359 1.16588 1.12850 1.15406 1.24371 0.89508 0.90154 1.02562 1.24260 0.98976 0.98423 0.88760 1.68615 1.14321 1.10878 1.18089 1.20213 0.96668 0.98345 0.95653 1.21804 0.92467 0.90652 0.93862 0.93530 0.78247 0.96129 0.96433 0.90638 0.91109 0.91844 0.91892 0.91629 0.91410 0.76238 0.80525 0.79742 0.79876 0.81535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.80 13.06 55.49 0.72 -27.07 16 2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 3 Si 0.91 22.35 29.55 -169.99 -5.02 17.33 16 4 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 7 C -0.24 -6.60 9.99 -15.06 -0.15 -6.75 16 8 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 9 N -0.73 -17.80 5.52 -59.91 -0.33 -18.13 16 10 C 0.16 3.07 5.70 -4.05 -0.02 3.05 16 11 C -0.10 -1.48 2.50 -88.64 -0.22 -1.71 16 12 H 0.08 1.17 8.02 -51.92 -0.42 0.75 16 13 C -0.11 -1.55 6.20 -25.07 -0.16 -1.70 16 14 C -0.12 -1.38 6.80 -25.61 -0.17 -1.55 16 15 C -0.13 -1.48 6.53 -25.61 -0.17 -1.65 16 16 C 0.15 1.84 2.60 -66.28 -0.17 1.66 16 17 H 0.10 1.40 7.58 -51.93 -0.39 1.00 16 18 N -0.71 -7.80 5.07 -53.15 -0.27 -8.07 16 19 C 0.57 6.85 7.77 -12.33 -0.10 6.76 16 20 O -0.53 -8.01 16.09 5.32 0.09 -7.93 16 21 C -0.18 -1.87 5.89 -104.83 -0.62 -2.49 16 22 C 0.19 1.95 10.69 -17.10 -0.18 1.77 16 23 N -0.45 -5.61 10.39 -12.28 -0.13 -5.73 16 24 C 0.27 3.30 7.60 -157.60 -1.20 2.10 16 25 N -0.42 -4.53 10.55 -12.39 -0.13 -4.66 16 26 C 0.11 0.70 11.21 -17.20 -0.19 0.51 16 27 C 0.07 0.42 11.22 -17.21 -0.19 0.23 16 28 N -0.40 -3.86 10.46 -10.77 -0.11 -3.97 16 29 C 0.02 0.19 6.59 -84.78 -0.56 -0.37 16 30 C 0.04 0.43 9.68 -38.38 -0.37 0.06 16 31 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 32 H 0.38 9.75 7.67 -40.82 -0.31 9.44 16 33 H 0.02 0.41 7.99 -51.93 -0.41 0.00 16 34 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 35 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.07 1.04 7.93 -51.93 -0.41 0.63 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.06 0.68 8.04 -51.93 -0.42 0.26 16 40 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.40 3.57 6.56 -40.82 -0.27 3.30 16 42 H 0.18 1.25 6.38 -52.49 -0.33 0.92 16 43 H 0.19 0.29 8.06 -52.49 -0.42 -0.13 16 44 H 0.18 0.25 8.06 -52.48 -0.42 -0.17 16 45 H 0.17 1.70 7.70 -52.49 -0.40 1.30 16 LS Contribution 379.32 15.07 5.72 5.72 Total: -1.00 -35.86 379.32 -9.92 -45.77 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -5.88 Total: 7.29 kcal Atomic # 6 Polarization: 4.02 SS G_CDS: -4.57 Total: -0.55 kcal Atomic # 7 Polarization: -67.39 SS G_CDS: -0.25 Total: -67.63 kcal Atomic # 8 Polarization: -8.01 SS G_CDS: 0.09 Total: -7.93 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -35.86 -9.92 -45.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482677692.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.013 kcal (2) G-P(sol) polarization free energy of solvation -35.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.774 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds