Wall clock time and date at job start Sat Apr 11 2020 06:21:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86804 * 120.00000 * 2 1 4 4 H 1.48506 * 109.46361 * 269.99371 * 3 2 1 5 5 H 1.48501 * 109.47279 * 29.98895 * 3 2 1 6 6 H 1.48495 * 109.47095 * 149.99654 * 3 2 1 7 7 C 1.38813 * 119.99853 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99509 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00349 * 0.02562 * 7 2 1 10 10 C 1.46493 * 120.00190 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47312 * 179.97438 * 10 9 7 12 12 H 1.09008 * 110.81163 * 51.66530 * 11 10 9 13 13 C 1.54892 * 110.75651 * 288.33220 * 11 10 9 14 14 C 1.54265 * 104.19387 * 203.73855 * 13 11 10 15 15 C 1.53875 * 106.59954 * 23.60909 * 14 13 11 16 16 C 1.54273 * 106.59983 * 359.97438 * 15 14 13 17 17 H 1.09000 * 110.48349 * 95.19745 * 16 15 14 18 18 N 1.46499 * 110.48727 * 217.71231 * 16 15 14 19 19 C 1.34777 * 119.99665 * 273.82192 * 18 16 15 20 20 O 1.21553 * 120.00289 * 359.72074 * 19 18 16 21 21 C 1.47846 * 119.99557 * 179.72375 * 19 18 16 22 22 C 1.40597 * 120.28214 * 359.97438 * 21 19 18 23 23 N 1.30812 * 121.52242 * 179.97438 * 22 21 19 24 24 C 1.33759 * 121.79529 * 0.02562 * 23 22 21 25 25 N 1.33893 * 120.61860 * 180.02562 * 24 23 22 26 26 C 1.31330 * 119.84714 * 179.97438 * 25 24 23 27 27 C 1.39762 * 120.77586 * 0.02664 * 26 25 24 28 28 N 1.31305 * 120.55687 * 359.97438 * 27 26 25 29 29 C 1.33670 * 119.70165 * 359.95446 * 28 27 26 30 30 C 1.38907 * 120.27496 * 179.72117 * 21 19 18 31 31 H 0.96997 * 119.99975 * 0.02562 * 1 2 3 32 32 H 0.96997 * 119.99341 * 359.97438 * 9 7 2 33 33 H 1.09000 * 109.47112 * 59.99665 * 10 9 7 34 34 H 1.09003 * 109.47357 * 300.00002 * 10 9 7 35 35 H 1.09002 * 110.48584 * 85.06271 * 13 11 10 36 36 H 1.09001 * 110.48549 * 322.41740 * 13 11 10 37 37 H 1.08996 * 110.03696 * 264.32187 * 14 13 11 38 38 H 1.08999 * 110.03143 * 142.88926 * 14 13 11 39 39 H 1.08992 * 110.03524 * 240.71396 * 15 14 13 40 40 H 1.09000 * 110.03071 * 119.28207 * 15 14 13 41 41 H 0.97001 * 119.99790 * 93.53905 * 18 16 15 42 42 H 1.07997 * 119.23970 * 0.02562 * 22 21 19 43 43 H 1.07999 * 119.61355 * 179.97438 * 26 25 24 44 44 H 1.08003 * 119.72366 * 179.97438 * 27 26 25 45 45 H 1.07995 * 121.00082 * 0.02562 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0462 -1.4002 5 1 1.4476 2.6528 0.6998 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0639 -4.8197 0.0012 12 1 0.3315 -4.7036 -0.7978 13 6 0.3614 -4.9406 1.3764 14 6 -0.0917 -6.4138 1.4414 15 6 0.8254 -7.1984 0.4868 16 6 1.8034 -6.1744 -0.1256 17 1 2.7369 -6.1551 0.4368 18 7 2.0605 -6.4893 -1.5331 19 6 3.0300 -7.3661 -1.8612 20 8 3.6945 -7.8918 -0.9897 21 6 3.2853 -7.6884 -3.2813 22 6 2.5200 -7.0841 -4.2942 23 7 2.7255 -7.3512 -5.5582 24 6 3.6713 -8.2110 -5.9521 25 7 3.8618 -8.4665 -7.2526 26 6 4.7952 -9.3131 -7.6225 27 6 5.5960 -9.9543 -6.6733 28 7 5.4292 -9.7209 -5.3920 29 6 4.4861 -8.8620 -4.9925 30 6 4.2869 -8.5869 -3.6264 31 1 -0.4850 0.8400 -0.0004 32 1 0.3556 -2.3880 0.0005 33 1 2.6848 -3.7145 0.8905 34 1 2.6848 -3.7146 -0.8895 35 1 -0.4997 -4.2742 1.4248 36 1 1.0611 -4.7207 2.1827 37 1 -1.1289 -6.5001 1.1178 38 1 0.0156 -6.7929 2.4578 39 1 0.2333 -7.6654 -0.3001 40 1 1.3776 -7.9581 1.0399 41 1 1.5302 -6.0697 -2.2285 42 1 1.7451 -6.3827 -4.0224 43 1 4.9453 -9.5167 -8.6724 44 1 6.3584 -10.6477 -6.9964 45 1 4.8923 -9.0628 -2.8692 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482677692.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:30 Heat of formation + Delta-G solvation = 30.062682 kcal Electronic energy + Delta-G solvation = -28325.797795 eV Core-core repulsion = 24342.481817 eV Total energy + Delta-G solvation = -3983.315978 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.86088 -41.29656 -39.62821 -38.83438 -36.33082 -36.15704 -34.96750 -33.30631 -33.17875 -32.33134 -30.19977 -28.93542 -27.03769 -26.39695 -26.10946 -24.11658 -23.88377 -22.91413 -21.55823 -21.07157 -20.27515 -19.65003 -19.11852 -18.93598 -17.80498 -17.37138 -16.81938 -16.66342 -16.25878 -16.18203 -15.79291 -15.76277 -15.73468 -15.14999 -15.04026 -14.73608 -14.56419 -14.27622 -14.00290 -13.94258 -13.56021 -13.15780 -13.11266 -13.00927 -12.88452 -12.80517 -12.41149 -12.15129 -12.03349 -12.00414 -11.87046 -11.59753 -11.58009 -11.26994 -11.21673 -10.91980 -10.63841 -10.40095 -10.10866 -9.94836 -8.98047 -7.94982 -5.22670 -1.28515 -0.95371 0.51229 1.18746 1.47217 1.47972 1.56463 1.85747 2.00547 2.35157 2.55604 2.78759 2.81070 2.89775 3.30701 3.38225 3.43299 3.46266 3.58585 3.67553 3.74273 3.90016 3.91833 4.18118 4.28551 4.30845 4.44658 4.49516 4.52993 4.58646 4.59681 4.68253 4.73275 4.77099 4.98697 5.06320 5.12144 5.20076 5.21402 5.26851 5.33418 5.48162 5.52708 5.56038 5.77992 6.27766 6.28076 6.35847 6.70409 6.99763 7.35000 8.10687 8.35220 9.28151 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011354 B = 0.002477 C = 0.002154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2465.441234 B =11300.746173 C =12998.602597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.071 4.071 3 Si 0.968 3.032 4 H -0.287 1.287 5 H -0.294 1.294 6 H -0.273 1.273 7 C -0.245 4.245 8 H 0.070 0.930 9 N -0.739 5.739 10 C 0.161 3.839 11 C -0.092 4.092 12 H 0.090 0.910 13 C -0.111 4.111 14 C -0.113 4.113 15 C -0.124 4.124 16 C 0.154 3.846 17 H 0.081 0.919 18 N -0.700 5.700 19 C 0.571 3.429 20 O -0.562 6.562 21 C -0.180 4.180 22 C 0.195 3.805 23 N -0.481 5.481 24 C 0.252 3.748 25 N -0.459 5.459 26 C 0.133 3.867 27 C 0.092 3.908 28 N -0.432 5.432 29 C 0.003 3.997 30 C 0.037 3.963 31 H 0.251 0.749 32 H 0.377 0.623 33 H 0.013 0.987 34 H 0.017 0.983 35 H 0.060 0.940 36 H 0.058 0.942 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.079 0.921 40 H 0.068 0.932 41 H 0.413 0.587 42 H 0.201 0.799 43 H 0.235 0.765 44 H 0.235 0.765 45 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.825 -25.143 -12.265 28.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.264 4.264 3 Si 0.798 3.202 4 H -0.214 1.214 5 H -0.220 1.220 6 H -0.198 1.198 7 C -0.377 4.377 8 H 0.087 0.913 9 N -0.382 5.382 10 C 0.035 3.965 11 C -0.111 4.111 12 H 0.108 0.892 13 C -0.150 4.150 14 C -0.150 4.150 15 C -0.163 4.163 16 C 0.049 3.951 17 H 0.099 0.901 18 N -0.351 5.351 19 C 0.357 3.643 20 O -0.442 6.442 21 C -0.187 4.187 22 C 0.018 3.982 23 N -0.190 5.190 24 C 0.013 3.987 25 N -0.174 5.174 26 C -0.047 4.047 27 C -0.086 4.086 28 N -0.147 5.147 29 C -0.122 4.122 30 C 0.009 3.991 31 H 0.060 0.940 32 H 0.209 0.791 33 H 0.031 0.969 34 H 0.034 0.966 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.095 0.905 38 H 0.092 0.908 39 H 0.098 0.902 40 H 0.087 0.913 41 H 0.251 0.749 42 H 0.217 0.783 43 H 0.251 0.749 44 H 0.251 0.749 45 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 6.832 -24.898 -12.138 28.530 hybrid contribution 0.308 1.161 0.433 1.277 sum 7.140 -23.737 -11.705 27.412 Atomic orbital electron populations 1.69790 1.06364 1.26034 1.59410 1.25483 0.96386 1.00795 1.03737 0.85216 0.77705 0.79879 0.77422 1.21432 1.22034 1.19819 1.19571 0.91301 0.85557 1.41259 0.91251 1.42470 1.05649 1.00802 1.89280 1.20761 0.93654 0.84900 0.97218 1.22417 0.97112 0.92096 0.99515 0.89163 1.22250 0.99892 0.97176 0.95637 1.22061 0.99623 0.93397 0.99965 1.22457 0.97039 0.97446 0.99357 1.21805 0.98825 0.93643 0.80828 0.90113 1.45882 1.35904 1.43846 1.09454 1.17904 0.79919 0.79191 0.87266 1.90787 1.49534 1.53224 1.50619 1.21018 1.00639 1.02202 0.94826 1.23652 0.95280 0.93651 0.85572 1.67501 1.17603 1.14685 1.19229 1.20346 0.93066 0.94137 0.91130 1.68419 1.18947 1.15155 1.14861 1.25317 0.87060 0.87383 1.04930 1.25192 0.98639 0.97378 0.87378 1.68685 1.14492 1.11360 1.20159 1.20203 0.97412 0.99173 0.95400 1.21875 0.92441 0.90619 0.94175 0.93966 0.79074 0.96914 0.96556 0.92076 0.92323 0.90459 0.90751 0.90203 0.91332 0.74877 0.78296 0.74869 0.74896 0.81685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.24 13.06 21.65 0.28 -57.96 16 2 C -0.07 -4.08 5.50 84.86 0.47 -3.62 16 3 Si 0.97 46.21 29.55 68.60 2.03 48.24 16 4 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 5 H -0.29 -14.04 7.11 99.48 0.71 -13.34 16 6 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 7 C -0.24 -13.65 9.99 84.03 0.84 -12.81 16 8 H 0.07 3.78 7.83 -2.91 -0.02 3.76 16 9 N -0.74 -36.54 5.52 -343.46 -1.90 -38.44 16 10 C 0.16 6.24 5.70 86.38 0.49 6.73 16 11 C -0.09 -2.64 2.50 -9.51 -0.02 -2.67 16 12 H 0.09 2.49 8.02 -2.38 -0.02 2.47 16 13 C -0.11 -3.08 6.20 31.67 0.20 -2.89 16 14 C -0.11 -2.33 6.80 31.32 0.21 -2.12 16 15 C -0.12 -2.58 6.53 31.32 0.20 -2.38 16 16 C 0.15 3.79 2.60 46.06 0.12 3.91 16 17 H 0.08 2.32 7.58 -2.39 -0.02 2.30 16 18 N -0.70 -15.07 5.07 -440.35 -2.23 -17.31 16 19 C 0.57 13.91 7.77 86.79 0.67 14.59 16 20 O -0.56 -17.34 16.09 -3.88 -0.06 -17.40 16 21 C -0.18 -3.89 5.89 -20.00 -0.12 -4.01 16 22 C 0.20 3.94 10.69 85.42 0.91 4.85 16 23 N -0.48 -12.04 10.39 -192.76 -2.00 -14.04 16 24 C 0.25 6.07 7.60 134.96 1.03 7.09 16 25 N -0.46 -9.37 10.55 -193.10 -2.04 -11.41 16 26 C 0.13 1.20 11.21 85.14 0.95 2.16 16 27 C 0.09 0.76 11.22 85.14 0.96 1.71 16 28 N -0.43 -7.62 10.46 -187.98 -1.97 -9.58 16 29 C 0.00 0.06 6.59 40.34 0.27 0.32 16 30 C 0.04 0.81 9.68 23.05 0.22 1.04 16 31 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 32 H 0.38 19.51 7.67 -92.71 -0.71 18.80 16 33 H 0.01 0.52 7.99 -2.39 -0.02 0.50 16 34 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.06 1.86 8.14 -2.39 -0.02 1.85 16 36 H 0.06 1.75 7.93 -2.39 -0.02 1.73 16 37 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.08 1.46 8.04 -2.39 -0.02 1.44 16 40 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 41 H 0.41 6.97 6.56 -92.71 -0.61 6.36 16 42 H 0.20 2.73 6.38 -2.91 -0.02 2.72 16 43 H 0.24 -0.45 8.06 -2.91 -0.02 -0.47 16 44 H 0.23 -0.62 8.06 -2.91 -0.02 -0.65 16 45 H 0.17 3.55 7.70 -2.91 -0.02 3.53 16 Total: -1.00 -79.95 379.32 -0.76 -80.70 By element: Atomic # 1 Polarization: 25.54 SS G_CDS: -0.27 Total: 25.27 kcal Atomic # 6 Polarization: 4.51 SS G_CDS: 7.40 Total: 11.92 kcal Atomic # 7 Polarization: -138.88 SS G_CDS: -9.85 Total: -148.73 kcal Atomic # 8 Polarization: -17.34 SS G_CDS: -0.06 Total: -17.40 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 2.03 Total: 48.24 kcal Total: -79.95 -0.76 -80.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482677692.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.768 kcal (2) G-P(sol) polarization free energy of solvation -79.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds