Wall clock time and date at job start Sat Apr 11 2020 06:21:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99584 * 2 1 4 4 H 1.48501 * 109.46864 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47259 * 299.99850 * 3 2 1 6 6 H 1.48495 * 109.47205 * 60.00216 * 3 2 1 7 7 C 1.38811 * 119.99972 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99492 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00367 * 359.97438 * 7 2 1 10 10 C 1.46499 * 120.00002 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46840 * 180.02562 * 10 9 7 12 12 H 1.08999 * 110.43379 * 307.53262 * 11 10 9 13 13 C 1.54888 * 110.49144 * 70.22314 * 11 10 9 14 14 C 1.54880 * 102.75044 * 156.61781 * 13 11 10 15 15 C 1.54265 * 104.19918 * 322.05742 * 14 13 11 16 16 C 1.53878 * 106.59441 * 23.61137 * 15 14 13 17 17 H 1.09002 * 110.07154 * 240.68874 * 16 15 14 18 18 N 1.46501 * 110.03231 * 119.28802 * 16 15 14 19 19 C 1.34772 * 120.00458 * 87.82959 * 18 16 15 20 20 O 1.21551 * 119.99807 * 0.02562 * 19 18 16 21 21 C 1.47847 * 120.00084 * 179.97438 * 19 18 16 22 22 C 1.40599 * 120.27778 * 359.72511 * 21 19 18 23 23 N 1.30812 * 121.51711 * 179.75590 * 22 21 19 24 24 C 1.33762 * 121.79896 * 0.50926 * 23 22 21 25 25 N 1.33890 * 120.62136 * 179.74018 * 24 23 22 26 26 C 1.31328 * 119.84840 * 180.02562 * 25 24 23 27 27 C 1.39758 * 120.77885 * 359.97438 * 26 25 24 28 28 N 1.31310 * 120.55011 * 0.02562 * 27 26 25 29 29 C 1.33669 * 119.70785 * 359.95425 * 28 27 26 30 30 C 1.38909 * 120.27780 * 179.97438 * 21 19 18 31 31 H 0.96996 * 120.00586 * 0.02562 * 1 2 3 32 32 H 0.97000 * 119.99578 * 359.97438 * 9 7 2 33 33 H 1.09002 * 109.47391 * 59.99677 * 10 9 7 34 34 H 1.09001 * 109.46813 * 299.99734 * 10 9 7 35 35 H 1.09002 * 110.75287 * 274.93733 * 13 11 10 36 36 H 1.09006 * 110.75349 * 38.30032 * 13 11 10 37 37 H 1.09000 * 110.48596 * 203.38078 * 14 13 11 38 38 H 1.09002 * 110.60022 * 80.79064 * 14 13 11 39 39 H 1.08992 * 110.03806 * 264.32723 * 15 14 13 40 40 H 1.09004 * 110.07797 * 142.91379 * 15 14 13 41 41 H 0.97004 * 119.99671 * 267.82917 * 18 16 15 42 42 H 1.08003 * 119.23833 * 0.02562 * 22 21 19 43 43 H 1.08004 * 119.61197 * 180.02562 * 26 25 24 44 44 H 1.07998 * 119.72562 * 179.97438 * 27 26 25 45 45 H 1.08001 * 120.99552 * 359.95759 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8913 2.3964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0582 -3.6568 -0.0005 11 6 1.0640 -4.8197 -0.0012 12 1 0.3434 -4.7048 0.8085 13 6 0.3390 -4.9125 -1.3668 14 6 -0.1114 -6.3936 -1.4147 15 6 1.0600 -7.1663 -0.7741 16 6 1.8073 -6.1655 0.1247 17 1 2.8377 -6.0561 -0.2135 18 7 1.7823 -6.6245 1.5158 19 6 2.7415 -7.4562 1.9684 20 8 3.6275 -7.8250 1.2226 21 6 2.7165 -7.9189 3.3723 22 6 1.6981 -7.4904 4.2419 23 7 1.6499 -7.8883 5.4871 24 6 2.5698 -8.7132 5.9996 25 7 2.5005 -9.1014 7.2791 26 6 3.4121 -9.9113 7.7668 27 6 4.4582 -10.3762 6.9650 28 7 4.5485 -10.0102 5.7072 29 6 3.6317 -9.1868 5.1894 30 6 3.7018 -8.7764 3.8448 31 1 -0.4851 0.8400 -0.0004 32 1 0.3556 -2.3881 0.0002 33 1 2.6849 -3.7145 0.8894 34 1 2.6848 -3.7144 -0.8906 35 1 -0.5227 -4.2455 -1.3927 36 1 1.0252 -4.6907 -2.1842 37 1 -0.2610 -6.7137 -2.4458 38 1 -1.0241 -6.5358 -0.8359 39 1 1.7274 -7.5426 -1.5492 40 1 0.6795 -7.9939 -0.1753 41 1 1.0754 -6.3299 2.1111 42 1 0.9357 -6.8208 3.8721 43 1 3.3522 -10.2224 8.7993 44 1 5.1989 -11.0414 7.3837 45 1 4.4975 -9.1185 3.1996 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482677695.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:34 Heat of formation + Delta-G solvation = 57.243139 kcal Electronic energy + Delta-G solvation = -28304.057222 eV Core-core repulsion = 24321.919878 eV Total energy + Delta-G solvation = -3982.137345 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.17471 -40.37054 -38.75099 -37.84025 -35.50196 -34.57743 -33.81086 -32.41993 -31.63877 -31.42703 -28.65355 -27.98807 -26.26948 -25.57808 -24.47452 -23.29503 -22.39921 -21.91715 -20.43691 -20.14886 -19.42682 -18.76669 -18.20158 -17.28832 -16.72916 -16.45969 -16.07024 -15.61441 -15.34660 -15.14281 -14.83302 -14.71728 -14.39854 -13.88878 -13.71274 -13.46129 -13.36469 -13.23063 -13.17963 -12.87073 -12.36595 -12.23873 -12.16412 -11.83328 -11.43339 -11.22686 -10.99032 -10.87924 -10.80129 -10.53738 -10.42748 -10.34213 -10.20736 -9.98359 -9.84059 -9.73557 -9.70007 -9.26714 -9.13507 -8.88581 -6.92997 -5.77907 -3.06191 -0.59732 -0.29038 1.22934 1.89176 2.76543 2.84407 2.98125 3.42861 3.45361 3.49026 3.50891 3.52084 3.52577 4.04548 4.09979 4.24936 4.37003 4.47226 4.52810 4.68894 4.72240 4.77149 4.97936 5.01510 5.29509 5.38212 5.41597 5.51965 5.58362 5.61366 5.71349 5.76999 5.79203 5.85910 6.01085 6.08499 6.16779 6.24279 6.40082 6.45514 6.49579 6.52577 6.74168 6.85599 6.90443 7.26368 7.38248 7.70259 7.93124 8.41187 9.52750 10.09913 10.44827 11.45016 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012127 B = 0.002380 C = 0.002129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2308.433424 B =11761.875330 C =13149.596329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.014 4.014 3 Si 0.906 3.094 4 H -0.281 1.281 5 H -0.291 1.291 6 H -0.292 1.292 7 C -0.237 4.237 8 H 0.070 0.930 9 N -0.730 5.730 10 C 0.160 3.840 11 C -0.103 4.103 12 H 0.081 0.919 13 C -0.110 4.110 14 C -0.125 4.125 15 C -0.131 4.131 16 C 0.146 3.854 17 H 0.097 0.903 18 N -0.709 5.709 19 C 0.564 3.436 20 O -0.528 6.528 21 C -0.176 4.176 22 C 0.194 3.806 23 N -0.454 5.454 24 C 0.273 3.727 25 N -0.417 5.417 26 C 0.114 3.886 27 C 0.073 3.927 28 N -0.404 5.404 29 C 0.018 3.982 30 C 0.040 3.960 31 H 0.254 0.746 32 H 0.384 0.616 33 H 0.018 0.982 34 H 0.022 0.978 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.070 0.930 40 H 0.065 0.935 41 H 0.400 0.600 42 H 0.178 0.822 43 H 0.186 0.814 44 H 0.184 0.816 45 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.892 -24.441 10.635 26.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.369 4.369 8 H 0.088 0.912 9 N -0.375 5.375 10 C 0.033 3.967 11 C -0.122 4.122 12 H 0.099 0.901 13 C -0.148 4.148 14 C -0.163 4.163 15 C -0.170 4.170 16 C 0.041 3.959 17 H 0.115 0.885 18 N -0.360 5.360 19 C 0.349 3.651 20 O -0.405 6.405 21 C -0.183 4.183 22 C 0.016 3.984 23 N -0.162 5.162 24 C 0.033 3.967 25 N -0.132 5.132 26 C -0.066 4.066 27 C -0.104 4.104 28 N -0.119 5.119 29 C -0.109 4.109 30 C 0.012 3.988 31 H 0.064 0.936 32 H 0.217 0.783 33 H 0.035 0.965 34 H 0.039 0.961 35 H 0.094 0.906 36 H 0.090 0.910 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.089 0.911 40 H 0.083 0.917 41 H 0.236 0.764 42 H 0.194 0.806 43 H 0.203 0.797 44 H 0.201 0.799 45 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 3.929 -24.202 10.523 26.681 hybrid contribution 0.478 0.829 -0.032 0.957 sum 4.407 -23.373 10.491 25.996 Atomic orbital electron populations 1.69659 1.05069 1.25525 1.57977 1.24725 0.95529 0.97660 1.03091 0.86131 0.78823 0.84165 0.77183 1.20583 1.21865 1.21883 1.19267 0.91054 0.84163 1.42389 0.91220 1.42322 1.05814 0.99851 1.89477 1.20690 0.92901 0.85188 0.97941 1.22452 0.97951 0.93024 0.98771 0.90089 1.22454 1.00565 0.95234 0.96559 1.22388 0.97550 0.95930 1.00425 1.22547 0.97638 0.97841 0.98985 1.21823 1.01588 0.93204 0.79247 0.88462 1.46113 1.28359 1.47783 1.13711 1.17781 0.82196 0.79263 0.85818 1.90810 1.35753 1.56713 1.57177 1.21218 0.98542 1.02048 0.96517 1.23363 0.94649 0.93127 0.87220 1.67492 1.24462 1.10599 1.13680 1.20115 0.91083 0.94389 0.91106 1.68356 1.24801 1.09289 1.10773 1.24371 0.89333 0.90922 1.01961 1.24263 0.98184 0.98048 0.89906 1.68616 1.22753 1.07385 1.13142 1.20211 0.95114 0.99250 0.96277 1.21808 0.95788 0.89158 0.92020 0.93585 0.78254 0.96465 0.96062 0.90600 0.90967 0.91757 0.91761 0.91148 0.91659 0.76371 0.80561 0.79734 0.79865 0.81522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.85 13.06 55.49 0.72 -27.13 16 2 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 3 Si 0.91 22.40 29.55 -169.99 -5.02 17.38 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 6 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 7 C -0.24 -6.59 9.99 -15.06 -0.15 -6.74 16 8 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 9 N -0.73 -17.88 5.49 -59.91 -0.33 -18.21 16 10 C 0.16 3.10 5.54 -4.04 -0.02 3.07 16 11 C -0.10 -1.49 2.59 -88.96 -0.23 -1.72 16 12 H 0.08 1.14 7.74 -51.93 -0.40 0.74 16 13 C -0.11 -1.53 6.19 -24.74 -0.15 -1.68 16 14 C -0.13 -1.37 6.83 -25.08 -0.17 -1.54 16 15 C -0.13 -1.46 6.59 -25.61 -0.17 -1.63 16 16 C 0.15 1.83 2.82 -66.81 -0.19 1.64 16 17 H 0.10 1.40 7.26 -51.93 -0.38 1.03 16 18 N -0.71 -7.71 4.94 -53.66 -0.26 -7.98 16 19 C 0.56 6.82 7.77 -12.33 -0.10 6.73 16 20 O -0.53 -8.04 16.04 5.32 0.09 -7.96 16 21 C -0.18 -1.85 5.89 -104.83 -0.62 -2.47 16 22 C 0.19 1.90 10.69 -17.10 -0.18 1.72 16 23 N -0.45 -5.51 10.39 -12.28 -0.13 -5.64 16 24 C 0.27 3.26 7.60 -157.60 -1.20 2.06 16 25 N -0.42 -4.47 10.55 -12.39 -0.13 -4.60 16 26 C 0.11 0.69 11.21 -17.20 -0.19 0.50 16 27 C 0.07 0.42 11.22 -17.21 -0.19 0.23 16 28 N -0.40 -3.83 10.46 -10.77 -0.11 -3.95 16 29 C 0.02 0.19 6.59 -84.78 -0.56 -0.36 16 30 C 0.04 0.43 9.68 -38.38 -0.37 0.06 16 31 H 0.25 7.34 8.31 -40.82 -0.34 7.01 16 32 H 0.38 9.77 7.64 -40.82 -0.31 9.46 16 33 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.02 0.43 8.02 -51.93 -0.42 0.01 16 35 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 36 H 0.07 1.06 7.97 -51.93 -0.41 0.65 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.06 0.68 7.92 -51.93 -0.41 0.27 16 41 H 0.40 3.42 6.39 -40.82 -0.26 3.15 16 42 H 0.18 1.18 6.38 -52.48 -0.33 0.85 16 43 H 0.19 0.28 8.06 -52.48 -0.42 -0.15 16 44 H 0.18 0.24 8.06 -52.49 -0.42 -0.18 16 45 H 0.17 1.70 7.70 -52.49 -0.40 1.30 16 LS Contribution 378.45 15.07 5.70 5.70 Total: -1.00 -36.05 378.45 -9.90 -45.95 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -5.84 Total: 7.07 kcal Atomic # 6 Polarization: 3.95 SS G_CDS: -4.59 Total: -0.64 kcal Atomic # 7 Polarization: -67.27 SS G_CDS: -0.24 Total: -67.51 kcal Atomic # 8 Polarization: -8.04 SS G_CDS: 0.09 Total: -7.96 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -36.05 -9.90 -45.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482677695.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.195 kcal (2) G-P(sol) polarization free energy of solvation -36.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.952 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds