Wall clock time and date at job start Sat Apr 11 2020 06:21:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99584 * 2 1 4 4 H 1.48501 * 109.46864 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47259 * 299.99850 * 3 2 1 6 6 H 1.48495 * 109.47205 * 60.00216 * 3 2 1 7 7 C 1.38811 * 119.99972 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99492 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00367 * 359.97438 * 7 2 1 10 10 C 1.46499 * 120.00002 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46840 * 180.02562 * 10 9 7 12 12 H 1.08999 * 110.43379 * 307.53262 * 11 10 9 13 13 C 1.54888 * 110.49144 * 70.22314 * 11 10 9 14 14 C 1.54880 * 102.75044 * 156.61781 * 13 11 10 15 15 C 1.54265 * 104.19918 * 322.05742 * 14 13 11 16 16 C 1.53878 * 106.59441 * 23.61137 * 15 14 13 17 17 H 1.09002 * 110.07154 * 240.68874 * 16 15 14 18 18 N 1.46501 * 110.03231 * 119.28802 * 16 15 14 19 19 C 1.34772 * 120.00458 * 87.82959 * 18 16 15 20 20 O 1.21551 * 119.99807 * 0.02562 * 19 18 16 21 21 C 1.47847 * 120.00084 * 179.97438 * 19 18 16 22 22 C 1.40599 * 120.27778 * 359.72511 * 21 19 18 23 23 N 1.30812 * 121.51711 * 179.75590 * 22 21 19 24 24 C 1.33762 * 121.79896 * 0.50926 * 23 22 21 25 25 N 1.33890 * 120.62136 * 179.74018 * 24 23 22 26 26 C 1.31328 * 119.84840 * 180.02562 * 25 24 23 27 27 C 1.39758 * 120.77885 * 359.97438 * 26 25 24 28 28 N 1.31310 * 120.55011 * 0.02562 * 27 26 25 29 29 C 1.33669 * 119.70785 * 359.95425 * 28 27 26 30 30 C 1.38909 * 120.27780 * 179.97438 * 21 19 18 31 31 H 0.96996 * 120.00586 * 0.02562 * 1 2 3 32 32 H 0.97000 * 119.99578 * 359.97438 * 9 7 2 33 33 H 1.09002 * 109.47391 * 59.99677 * 10 9 7 34 34 H 1.09001 * 109.46813 * 299.99734 * 10 9 7 35 35 H 1.09002 * 110.75287 * 274.93733 * 13 11 10 36 36 H 1.09006 * 110.75349 * 38.30032 * 13 11 10 37 37 H 1.09000 * 110.48596 * 203.38078 * 14 13 11 38 38 H 1.09002 * 110.60022 * 80.79064 * 14 13 11 39 39 H 1.08992 * 110.03806 * 264.32723 * 15 14 13 40 40 H 1.09004 * 110.07797 * 142.91379 * 15 14 13 41 41 H 0.97004 * 119.99671 * 267.82917 * 18 16 15 42 42 H 1.08003 * 119.23833 * 0.02562 * 22 21 19 43 43 H 1.08004 * 119.61197 * 180.02562 * 26 25 24 44 44 H 1.07998 * 119.72562 * 179.97438 * 27 26 25 45 45 H 1.08001 * 120.99552 * 359.95759 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8913 2.3964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0582 -3.6568 -0.0005 11 6 1.0640 -4.8197 -0.0012 12 1 0.3434 -4.7048 0.8085 13 6 0.3390 -4.9125 -1.3668 14 6 -0.1114 -6.3936 -1.4147 15 6 1.0600 -7.1663 -0.7741 16 6 1.8073 -6.1655 0.1247 17 1 2.8377 -6.0561 -0.2135 18 7 1.7823 -6.6245 1.5158 19 6 2.7415 -7.4562 1.9684 20 8 3.6275 -7.8250 1.2226 21 6 2.7165 -7.9189 3.3723 22 6 1.6981 -7.4904 4.2419 23 7 1.6499 -7.8883 5.4871 24 6 2.5698 -8.7132 5.9996 25 7 2.5005 -9.1014 7.2791 26 6 3.4121 -9.9113 7.7668 27 6 4.4582 -10.3762 6.9650 28 7 4.5485 -10.0102 5.7072 29 6 3.6317 -9.1868 5.1894 30 6 3.7018 -8.7764 3.8448 31 1 -0.4851 0.8400 -0.0004 32 1 0.3556 -2.3881 0.0002 33 1 2.6849 -3.7145 0.8894 34 1 2.6848 -3.7144 -0.8906 35 1 -0.5227 -4.2455 -1.3927 36 1 1.0252 -4.6907 -2.1842 37 1 -0.2610 -6.7137 -2.4458 38 1 -1.0241 -6.5358 -0.8359 39 1 1.7274 -7.5426 -1.5492 40 1 0.6795 -7.9939 -0.1753 41 1 1.0754 -6.3299 2.1111 42 1 0.9357 -6.8208 3.8721 43 1 3.3522 -10.2224 8.7993 44 1 5.1989 -11.0414 7.3837 45 1 4.4975 -9.1185 3.1996 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482677695.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:33 Heat of formation + Delta-G solvation = 30.898886 kcal Electronic energy + Delta-G solvation = -28305.199595 eV Core-core repulsion = 24321.919878 eV Total energy + Delta-G solvation = -3983.279717 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.86261 -41.32434 -39.64273 -38.83655 -36.35160 -36.15854 -34.91725 -33.30501 -33.17487 -32.32661 -30.20676 -28.94348 -27.05066 -26.40024 -26.10124 -24.12645 -23.88120 -22.92365 -21.52813 -21.13028 -20.28909 -19.64705 -19.10667 -18.92584 -17.78425 -17.37231 -16.82191 -16.63352 -16.26818 -16.23794 -15.82263 -15.77331 -15.68081 -15.16122 -15.06589 -14.76106 -14.55382 -14.35281 -14.00298 -13.93700 -13.46884 -13.18062 -13.08371 -12.90612 -12.88519 -12.78175 -12.48689 -12.13464 -12.01213 -11.94059 -11.84894 -11.62148 -11.57587 -11.40167 -11.19702 -10.93475 -10.63990 -10.40281 -10.11358 -9.94978 -8.98876 -7.95696 -5.23445 -1.28708 -0.95370 0.51095 1.18736 1.46785 1.46999 1.56979 1.85851 2.00685 2.35064 2.55110 2.78694 2.80994 2.89934 3.30989 3.37671 3.43903 3.45615 3.58069 3.68810 3.74133 3.89973 3.92696 4.16492 4.28984 4.30785 4.43064 4.50001 4.55820 4.58972 4.61649 4.67228 4.75028 4.77660 5.00993 5.02755 5.09297 5.19277 5.21133 5.27374 5.36242 5.47969 5.52322 5.56815 5.77867 6.27227 6.28025 6.35788 6.70160 7.00381 7.34377 8.09656 8.34620 9.27632 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012127 B = 0.002380 C = 0.002129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2308.433424 B =11761.875330 C =13149.596329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.072 4.072 3 Si 0.969 3.031 4 H -0.270 1.270 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.244 4.244 8 H 0.069 0.931 9 N -0.739 5.739 10 C 0.161 3.839 11 C -0.092 4.092 12 H 0.089 0.911 13 C -0.111 4.111 14 C -0.112 4.112 15 C -0.124 4.124 16 C 0.153 3.847 17 H 0.078 0.922 18 N -0.700 5.700 19 C 0.570 3.430 20 O -0.563 6.563 21 C -0.180 4.180 22 C 0.196 3.804 23 N -0.481 5.481 24 C 0.252 3.748 25 N -0.458 5.458 26 C 0.133 3.867 27 C 0.092 3.908 28 N -0.433 5.433 29 C 0.003 3.997 30 C 0.036 3.964 31 H 0.252 0.748 32 H 0.377 0.623 33 H 0.012 0.988 34 H 0.015 0.985 35 H 0.061 0.939 36 H 0.059 0.941 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.071 0.929 40 H 0.077 0.923 41 H 0.413 0.587 42 H 0.202 0.798 43 H 0.235 0.765 44 H 0.235 0.765 45 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.387 -26.233 12.248 29.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.264 4.264 3 Si 0.798 3.202 4 H -0.195 1.195 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.376 4.376 8 H 0.087 0.913 9 N -0.382 5.382 10 C 0.034 3.966 11 C -0.111 4.111 12 H 0.107 0.893 13 C -0.149 4.149 14 C -0.150 4.150 15 C -0.163 4.163 16 C 0.048 3.952 17 H 0.096 0.904 18 N -0.351 5.351 19 C 0.356 3.644 20 O -0.443 6.443 21 C -0.187 4.187 22 C 0.019 3.981 23 N -0.190 5.190 24 C 0.013 3.987 25 N -0.173 5.173 26 C -0.047 4.047 27 C -0.086 4.086 28 N -0.148 5.148 29 C -0.122 4.122 30 C 0.008 3.992 31 H 0.061 0.939 32 H 0.210 0.790 33 H 0.029 0.971 34 H 0.033 0.967 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.096 0.904 38 H 0.097 0.903 39 H 0.089 0.911 40 H 0.096 0.904 41 H 0.251 0.749 42 H 0.219 0.781 43 H 0.251 0.749 44 H 0.251 0.749 45 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 4.417 -25.994 12.114 29.017 hybrid contribution 0.453 1.237 -0.350 1.363 sum 4.871 -24.757 11.764 27.839 Atomic orbital electron populations 1.69793 1.06356 1.25986 1.59461 1.25489 0.96410 1.00810 1.03742 0.85139 0.78124 0.80136 0.76768 1.19492 1.21897 1.21937 1.19605 0.91300 0.85552 1.41160 0.91276 1.42472 1.05661 1.00787 1.89255 1.20800 0.93688 0.85037 0.97080 1.22298 0.97072 0.92054 0.99702 0.89306 1.22405 0.99646 0.97312 0.95546 1.22320 0.97834 0.93212 1.01618 1.22487 0.97456 0.97578 0.98734 1.21603 1.00435 0.92677 0.80453 0.90425 1.45991 1.28499 1.47278 1.13349 1.17925 0.81578 0.78779 0.86119 1.90790 1.37137 1.58148 1.58197 1.21022 0.99275 1.02765 0.95624 1.23666 0.94802 0.93046 0.86597 1.67502 1.25350 1.11603 1.14509 1.20345 0.91459 0.94883 0.91979 1.68418 1.27027 1.11472 1.10420 1.25315 0.87495 0.88081 1.03795 1.25191 0.98313 0.96632 0.88463 1.68683 1.22853 1.08090 1.15129 1.20201 0.95629 1.00152 0.96211 1.21875 0.95752 0.89204 0.92355 0.93949 0.79035 0.97052 0.96678 0.92037 0.92174 0.90382 0.90319 0.91065 0.90401 0.74851 0.78139 0.74856 0.74922 0.81775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.33 13.06 21.65 0.28 -58.05 16 2 C -0.07 -4.13 5.50 84.86 0.47 -3.66 16 3 Si 0.97 46.36 29.55 68.60 2.03 48.39 16 4 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 5 H -0.29 -13.89 7.11 99.48 0.71 -13.19 16 6 H -0.29 -13.92 7.11 99.48 0.71 -13.22 16 7 C -0.24 -13.68 9.99 84.03 0.84 -12.84 16 8 H 0.07 3.80 7.83 -2.91 -0.02 3.78 16 9 N -0.74 -36.77 5.49 -343.45 -1.89 -38.66 16 10 C 0.16 6.30 5.54 86.38 0.48 6.78 16 11 C -0.09 -2.65 2.59 -9.72 -0.03 -2.67 16 12 H 0.09 2.44 7.74 -2.39 -0.02 2.43 16 13 C -0.11 -3.04 6.19 31.88 0.20 -2.85 16 14 C -0.11 -2.25 6.83 31.67 0.22 -2.03 16 15 C -0.12 -2.56 6.59 31.32 0.21 -2.36 16 16 C 0.15 3.78 2.82 45.72 0.13 3.91 16 17 H 0.08 2.27 7.26 -2.39 -0.02 2.26 16 18 N -0.70 -14.85 4.94 -441.97 -2.18 -17.03 16 19 C 0.57 13.86 7.77 86.79 0.67 14.53 16 20 O -0.56 -17.54 16.04 -3.88 -0.06 -17.60 16 21 C -0.18 -3.85 5.89 -20.00 -0.12 -3.97 16 22 C 0.20 3.84 10.69 85.42 0.91 4.75 16 23 N -0.48 -11.77 10.39 -192.75 -2.00 -13.78 16 24 C 0.25 5.99 7.60 134.96 1.03 7.02 16 25 N -0.46 -9.22 10.55 -193.10 -2.04 -11.26 16 26 C 0.13 1.18 11.21 85.14 0.95 2.13 16 27 C 0.09 0.75 11.22 85.14 0.96 1.70 16 28 N -0.43 -7.61 10.46 -187.99 -1.97 -9.58 16 29 C 0.00 0.06 6.59 40.34 0.27 0.32 16 30 C 0.04 0.80 9.68 23.05 0.22 1.02 16 31 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 32 H 0.38 19.59 7.64 -92.71 -0.71 18.88 16 33 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 34 H 0.02 0.62 8.02 -2.39 -0.02 0.60 16 35 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.06 1.78 7.97 -2.38 -0.02 1.76 16 37 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.08 1.46 7.92 -2.38 -0.02 1.44 16 41 H 0.41 6.61 6.39 -92.71 -0.59 6.01 16 42 H 0.20 2.56 6.38 -2.91 -0.02 2.54 16 43 H 0.24 -0.50 8.06 -2.91 -0.02 -0.52 16 44 H 0.23 -0.63 8.06 -2.91 -0.02 -0.65 16 45 H 0.16 3.55 7.70 -2.91 -0.02 3.53 16 Total: -1.00 -80.59 378.45 -0.67 -81.27 By element: Atomic # 1 Polarization: 24.76 SS G_CDS: -0.25 Total: 24.51 kcal Atomic # 6 Polarization: 4.39 SS G_CDS: 7.40 Total: 11.79 kcal Atomic # 7 Polarization: -138.57 SS G_CDS: -9.79 Total: -148.36 kcal Atomic # 8 Polarization: -17.54 SS G_CDS: -0.06 Total: -17.60 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 2.03 Total: 48.39 kcal Total: -80.59 -0.67 -81.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482677695.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.167 kcal (2) G-P(sol) polarization free energy of solvation -80.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.268 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds