Wall clock time and date at job start Sat Apr 11 2020 06:21:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86803 * 119.99917 * 2 1 4 4 H 1.48505 * 109.46782 * 269.99933 * 3 2 1 5 5 H 1.48500 * 109.47266 * 29.99713 * 3 2 1 6 6 H 1.48505 * 109.47185 * 149.99948 * 3 2 1 7 7 C 1.38815 * 120.00425 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00276 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99496 * 0.02562 * 7 2 1 10 10 C 1.46510 * 119.99628 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46482 * 179.97438 * 10 9 7 12 12 H 1.08999 * 109.47014 * 65.00587 * 11 10 9 13 13 N 1.46499 * 109.47493 * 304.99988 * 11 10 9 14 14 C 1.34777 * 119.99665 * 155.28120 * 13 11 10 15 15 O 1.21603 * 120.00257 * 359.72088 * 14 13 11 16 16 C 1.47425 * 119.99743 * 179.72398 * 14 13 11 17 17 C 1.41368 * 126.40650 * 359.68990 * 16 14 13 18 18 N 1.30444 * 108.07873 * 179.81555 * 17 16 14 19 19 N 1.39936 * 108.91659 * 0.44454 * 18 17 16 20 20 C 1.39805 * 125.77516 * 179.71371 * 19 18 17 21 21 C 1.38945 * 119.69283 * 359.72473 * 20 19 18 22 22 C 1.38420 * 119.10646 * 179.77577 * 21 20 19 23 23 C 1.38790 * 118.48729 * 0.48695 * 22 21 20 24 24 C 1.38141 * 119.28908 * 359.75333 * 23 22 21 25 25 N 1.31887 * 120.84143 * 359.97438 * 24 23 22 26 26 C 1.34620 * 108.44363 * 359.70997 * 19 18 17 27 27 C 1.52999 * 109.46645 * 185.00036 * 11 10 9 28 28 C 1.53009 * 117.50162 * 248.74970 * 27 11 10 29 29 C 1.53004 * 117.50286 * 180.09147 * 27 11 10 30 30 H 0.97003 * 120.00485 * 359.97438 * 1 2 3 31 31 H 0.97003 * 120.00283 * 359.97438 * 9 7 2 32 32 H 1.08998 * 109.46604 * 59.99973 * 10 9 7 33 33 H 1.08988 * 109.46867 * 299.99676 * 10 9 7 34 34 H 0.97001 * 119.99790 * 334.99833 * 13 11 10 35 35 H 1.07998 * 125.96012 * 359.97438 * 17 16 14 36 36 H 1.08002 * 120.44297 * 359.97438 * 21 20 19 37 37 H 1.08001 * 120.75803 * 180.26774 * 22 21 20 38 38 H 1.07996 * 120.36184 * 179.73134 * 23 22 21 39 39 H 1.08002 * 119.57588 * 179.97438 * 24 23 22 40 40 H 1.08005 * 126.31318 * 179.97438 * 26 19 18 41 41 H 1.08997 * 115.55354 * 34.41855 * 27 11 10 42 42 H 1.08999 * 117.49124 * 0.02562 * 28 27 11 43 43 H 1.09001 * 117.50171 * 145.01715 * 28 27 11 44 44 H 1.08993 * 117.50276 * 214.98380 * 29 27 11 45 45 H 1.09005 * 117.49316 * 359.97364 * 29 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6568 0.0005 11 6 1.0639 -4.8197 0.0012 12 1 0.4974 -4.8138 -0.9300 13 7 0.1448 -4.6758 1.1329 14 6 -1.0776 -5.2414 1.0843 15 8 -1.4195 -5.8669 0.0991 16 6 -2.0002 -5.1018 2.2257 17 6 -1.7426 -4.4139 3.4336 18 7 -2.8012 -4.5127 4.1893 19 7 -3.7700 -5.2659 3.5169 20 6 -5.0377 -5.5920 4.0080 21 6 -5.4182 -5.1596 5.2724 22 6 -6.6779 -5.4855 5.7446 23 6 -7.5122 -6.2445 4.9358 24 6 -7.0659 -6.6445 3.6912 25 7 -5.8620 -6.3138 3.2662 26 6 -3.2748 -5.6231 2.3172 27 6 1.8248 -6.1411 0.1269 28 6 1.8339 -7.0696 -1.0892 29 6 1.0023 -7.4311 0.1440 30 1 -0.4851 0.8400 0.0004 31 1 0.3555 -2.3881 0.0005 32 1 2.6848 -3.7144 0.8905 33 1 2.6847 -3.7145 -0.8894 34 1 0.4176 -4.1769 1.9188 35 1 -0.8296 -3.8949 3.6855 36 1 -4.7414 -4.5743 5.8772 37 1 -7.0028 -5.1597 6.7217 38 1 -8.4996 -6.5198 5.2759 39 1 -7.7111 -7.2356 3.0582 40 1 -3.7813 -6.2100 1.5652 41 1 2.7237 -6.1092 0.7425 42 1 1.2982 -6.7387 -1.9789 43 1 2.7388 -7.6488 -1.2735 44 1 1.3603 -8.2480 0.7706 45 1 -0.0810 -7.3383 0.0661 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483592154.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:38 Heat of formation + Delta-G solvation = 130.759073 kcal Electronic energy + Delta-G solvation = -28497.611627 eV Core-core repulsion = 24518.662172 eV Total energy + Delta-G solvation = -3978.949454 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.87015 -40.30335 -39.34795 -36.96942 -34.95708 -34.07093 -33.27582 -32.89649 -31.14204 -30.60626 -29.81475 -27.90798 -24.76573 -24.21242 -23.90969 -22.55282 -22.00964 -21.48857 -21.26188 -20.09995 -19.85050 -18.78636 -17.23651 -16.87173 -16.61707 -16.08801 -15.94922 -15.89417 -15.14271 -14.97467 -14.87647 -14.51332 -14.33265 -13.96417 -13.72456 -13.52306 -13.30882 -13.15078 -12.87396 -12.78538 -12.48709 -12.05874 -11.62782 -11.30240 -11.16248 -10.98580 -10.87041 -10.79899 -10.75123 -10.33960 -10.16201 -10.09322 -10.05523 -9.88874 -9.66530 -9.50699 -9.33301 -8.89611 -8.64533 -8.43926 -6.94009 -5.75876 -3.05796 0.28931 0.75736 1.71511 1.81479 2.13131 3.38476 3.43394 3.46110 3.49251 3.50681 3.67690 3.92379 4.14931 4.25730 4.44984 4.56803 4.57731 4.64295 4.77828 4.90904 4.95544 5.11902 5.24216 5.25973 5.31189 5.33660 5.49115 5.56541 5.57407 5.68217 5.72785 5.85772 5.91267 5.97023 6.04322 6.14693 6.23488 6.27965 6.42818 6.54361 6.59754 6.73026 6.75646 7.01304 7.08501 7.55944 7.70063 7.96767 8.41572 8.63598 9.53576 10.09697 10.45232 11.46149 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009778 B = 0.002882 C = 0.002335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2862.753960 B = 9712.956105 C =11989.673934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.012 4.012 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.242 4.242 8 H 0.071 0.929 9 N -0.732 5.732 10 C 0.148 3.852 11 C 0.171 3.829 12 H 0.089 0.911 13 N -0.701 5.701 14 C 0.599 3.401 15 O -0.551 6.551 16 C -0.274 4.274 17 C 0.108 3.892 18 N -0.288 5.288 19 N -0.320 5.320 20 C 0.370 3.630 21 C -0.161 4.161 22 C -0.052 4.052 23 C -0.187 4.187 24 C 0.134 3.866 25 N -0.505 5.505 26 C 0.150 3.850 27 C -0.162 4.162 28 C -0.172 4.172 29 C -0.185 4.185 30 H 0.255 0.745 31 H 0.386 0.614 32 H 0.025 0.975 33 H 0.035 0.965 34 H 0.403 0.597 35 H 0.202 0.798 36 H 0.151 0.849 37 H 0.145 0.855 38 H 0.143 0.857 39 H 0.168 0.832 40 H 0.195 0.805 41 H 0.103 0.897 42 H 0.094 0.906 43 H 0.088 0.912 44 H 0.081 0.919 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.282 -16.449 11.426 22.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.208 4.208 3 Si 0.737 3.263 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.373 4.373 8 H 0.089 0.911 9 N -0.377 5.377 10 C 0.020 3.980 11 C 0.066 3.934 12 H 0.107 0.893 13 N -0.350 5.350 14 C 0.386 3.614 15 O -0.431 6.431 16 C -0.288 4.288 17 C -0.082 4.082 18 N -0.106 5.106 19 N -0.094 5.094 20 C 0.144 3.856 21 C -0.183 4.183 22 C -0.079 4.079 23 C -0.208 4.208 24 C -0.024 4.024 25 N -0.218 5.218 26 C 0.004 3.996 27 C -0.182 4.182 28 C -0.209 4.209 29 C -0.222 4.222 30 H 0.065 0.935 31 H 0.221 0.779 32 H 0.043 0.957 33 H 0.053 0.947 34 H 0.237 0.763 35 H 0.219 0.781 36 H 0.169 0.831 37 H 0.163 0.837 38 H 0.160 0.840 39 H 0.185 0.815 40 H 0.212 0.788 41 H 0.121 0.879 42 H 0.113 0.887 43 H 0.107 0.893 44 H 0.100 0.900 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -11.688 -16.720 11.044 23.198 hybrid contribution 0.473 1.363 0.365 1.488 sum -11.215 -15.357 11.409 22.176 Atomic orbital electron populations 1.69667 1.05067 1.25637 1.57398 1.24745 0.95485 0.97660 1.02910 0.86208 0.78621 0.83915 0.77515 1.21759 1.21836 1.20771 1.19201 0.91006 0.84037 1.43044 0.91143 1.42362 1.06036 0.99692 1.89569 1.20921 0.93020 0.85099 0.98972 1.20793 0.90048 0.92699 0.89843 0.89327 1.45691 1.14310 1.54202 1.20786 1.17022 0.80913 0.78345 0.85143 1.90683 1.76366 1.42737 1.33295 1.20454 0.97137 1.12539 0.98673 1.24407 0.97261 0.95565 0.90994 1.77261 0.97838 1.14986 1.20468 1.45410 1.10657 1.40277 1.13087 1.17726 0.83333 0.94307 0.90280 1.21678 0.98344 1.02972 0.95316 1.21557 0.92150 0.94224 0.99931 1.22192 1.01832 1.00819 0.95963 1.22565 0.90053 0.95669 0.94107 1.66885 1.05133 1.13805 1.36015 1.23140 0.93122 0.95338 0.87951 1.22653 1.01451 0.91500 1.02617 1.22893 1.02000 1.03211 0.92828 1.23273 1.00809 0.97411 1.00689 0.93522 0.77931 0.95720 0.94681 0.76257 0.78102 0.83127 0.83737 0.83958 0.81489 0.78828 0.87934 0.88746 0.89320 0.90025 0.86367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.94 13.06 55.49 0.72 -27.22 16 2 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 3 Si 0.91 22.24 29.55 -169.99 -5.02 17.21 16 4 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.24 -6.61 9.99 -15.06 -0.15 -6.76 16 8 H 0.07 1.87 7.83 -52.49 -0.41 1.45 16 9 N -0.73 -17.95 5.43 -59.91 -0.33 -18.27 16 10 C 0.15 2.86 5.80 -4.04 -0.02 2.84 16 11 C 0.17 2.89 2.43 -67.93 -0.17 2.72 16 12 H 0.09 1.71 7.34 -51.93 -0.38 1.33 16 13 N -0.70 -11.30 4.49 -54.88 -0.25 -11.55 16 14 C 0.60 10.10 7.14 -12.52 -0.09 10.01 16 15 O -0.55 -10.54 13.91 5.27 0.07 -10.47 16 16 C -0.27 -4.15 6.13 -105.05 -0.64 -4.79 16 17 C 0.11 1.48 11.50 -16.95 -0.19 1.28 16 18 N -0.29 -4.10 11.74 30.88 0.36 -3.74 16 19 N -0.32 -4.48 3.76 -11.74 -0.04 -4.52 16 20 C 0.37 4.56 7.54 -154.38 -1.16 3.40 16 21 C -0.16 -1.58 9.69 -39.25 -0.38 -1.97 16 22 C -0.05 -0.35 10.17 -39.31 -0.40 -0.75 16 23 C -0.19 -1.12 10.11 -39.41 -0.40 -1.51 16 24 C 0.13 1.03 11.18 -17.56 -0.20 0.83 16 25 N -0.51 -5.74 9.82 -12.29 -0.12 -5.86 16 26 C 0.15 2.18 10.86 -16.41 -0.18 2.00 16 27 C -0.16 -2.33 5.36 -90.61 -0.49 -2.81 16 28 C -0.17 -2.30 10.18 -26.69 -0.27 -2.57 16 29 C -0.18 -2.60 9.73 -26.69 -0.26 -2.86 16 30 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 31 H 0.39 10.18 7.33 -40.82 -0.30 9.88 16 32 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.04 0.69 8.14 -51.94 -0.42 0.27 16 34 H 0.40 6.04 7.56 -40.82 -0.31 5.74 16 35 H 0.20 2.22 7.50 -52.49 -0.39 1.83 16 36 H 0.15 1.45 7.67 -52.49 -0.40 1.05 16 37 H 0.14 0.55 8.06 -52.49 -0.42 0.13 16 38 H 0.14 0.40 8.06 -52.49 -0.42 -0.02 16 39 H 0.17 0.76 8.06 -52.49 -0.42 0.34 16 40 H 0.19 2.61 8.03 -52.48 -0.42 2.19 16 41 H 0.10 1.36 8.11 -51.93 -0.42 0.94 16 42 H 0.09 1.33 8.05 -51.93 -0.42 0.91 16 43 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.12 1.93 5.00 -51.93 -0.26 1.67 16 LS Contribution 385.87 15.07 5.81 5.81 Total: -1.00 -34.10 385.87 -9.69 -43.79 By element: Atomic # 1 Polarization: 22.00 SS G_CDS: -5.81 Total: 16.19 kcal Atomic # 6 Polarization: 3.72 SS G_CDS: -5.10 Total: -1.38 kcal Atomic # 7 Polarization: -71.51 SS G_CDS: 0.35 Total: -71.16 kcal Atomic # 8 Polarization: -10.54 SS G_CDS: 0.07 Total: -10.47 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -34.10 -9.69 -43.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483592154.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.550 kcal (2) G-P(sol) polarization free energy of solvation -34.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 140.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.791 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds