Wall clock time and date at job start Sat Apr 11 2020 06:21:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86803 * 119.99917 * 2 1 4 4 H 1.48505 * 109.46782 * 269.99933 * 3 2 1 5 5 H 1.48500 * 109.47266 * 29.99713 * 3 2 1 6 6 H 1.48505 * 109.47185 * 149.99948 * 3 2 1 7 7 C 1.38815 * 120.00425 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00276 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99496 * 0.02562 * 7 2 1 10 10 C 1.46510 * 119.99628 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46482 * 179.97438 * 10 9 7 12 12 H 1.08999 * 109.47014 * 65.00587 * 11 10 9 13 13 N 1.46499 * 109.47493 * 304.99988 * 11 10 9 14 14 C 1.34777 * 119.99665 * 155.28120 * 13 11 10 15 15 O 1.21603 * 120.00257 * 359.72088 * 14 13 11 16 16 C 1.47425 * 119.99743 * 179.72398 * 14 13 11 17 17 C 1.41368 * 126.40650 * 359.68990 * 16 14 13 18 18 N 1.30444 * 108.07873 * 179.81555 * 17 16 14 19 19 N 1.39936 * 108.91659 * 0.44454 * 18 17 16 20 20 C 1.39805 * 125.77516 * 179.71371 * 19 18 17 21 21 C 1.38945 * 119.69283 * 359.72473 * 20 19 18 22 22 C 1.38420 * 119.10646 * 179.77577 * 21 20 19 23 23 C 1.38790 * 118.48729 * 0.48695 * 22 21 20 24 24 C 1.38141 * 119.28908 * 359.75333 * 23 22 21 25 25 N 1.31887 * 120.84143 * 359.97438 * 24 23 22 26 26 C 1.34620 * 108.44363 * 359.70997 * 19 18 17 27 27 C 1.52999 * 109.46645 * 185.00036 * 11 10 9 28 28 C 1.53009 * 117.50162 * 248.74970 * 27 11 10 29 29 C 1.53004 * 117.50286 * 180.09147 * 27 11 10 30 30 H 0.97003 * 120.00485 * 359.97438 * 1 2 3 31 31 H 0.97003 * 120.00283 * 359.97438 * 9 7 2 32 32 H 1.08998 * 109.46604 * 59.99973 * 10 9 7 33 33 H 1.08988 * 109.46867 * 299.99676 * 10 9 7 34 34 H 0.97001 * 119.99790 * 334.99833 * 13 11 10 35 35 H 1.07998 * 125.96012 * 359.97438 * 17 16 14 36 36 H 1.08002 * 120.44297 * 359.97438 * 21 20 19 37 37 H 1.08001 * 120.75803 * 180.26774 * 22 21 20 38 38 H 1.07996 * 120.36184 * 179.73134 * 23 22 21 39 39 H 1.08002 * 119.57588 * 179.97438 * 24 23 22 40 40 H 1.08005 * 126.31318 * 179.97438 * 26 19 18 41 41 H 1.08997 * 115.55354 * 34.41855 * 27 11 10 42 42 H 1.08999 * 117.49124 * 0.02562 * 28 27 11 43 43 H 1.09001 * 117.50171 * 145.01715 * 28 27 11 44 44 H 1.08993 * 117.50276 * 214.98380 * 29 27 11 45 45 H 1.09005 * 117.49316 * 359.97364 * 29 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6568 0.0005 11 6 1.0639 -4.8197 0.0012 12 1 0.4974 -4.8138 -0.9300 13 7 0.1448 -4.6758 1.1329 14 6 -1.0776 -5.2414 1.0843 15 8 -1.4195 -5.8669 0.0991 16 6 -2.0002 -5.1018 2.2257 17 6 -1.7426 -4.4139 3.4336 18 7 -2.8012 -4.5127 4.1893 19 7 -3.7700 -5.2659 3.5169 20 6 -5.0377 -5.5920 4.0080 21 6 -5.4182 -5.1596 5.2724 22 6 -6.6779 -5.4855 5.7446 23 6 -7.5122 -6.2445 4.9358 24 6 -7.0659 -6.6445 3.6912 25 7 -5.8620 -6.3138 3.2662 26 6 -3.2748 -5.6231 2.3172 27 6 1.8248 -6.1411 0.1269 28 6 1.8339 -7.0696 -1.0892 29 6 1.0023 -7.4311 0.1440 30 1 -0.4851 0.8400 0.0004 31 1 0.3555 -2.3881 0.0005 32 1 2.6848 -3.7144 0.8905 33 1 2.6847 -3.7145 -0.8894 34 1 0.4176 -4.1769 1.9188 35 1 -0.8296 -3.8949 3.6855 36 1 -4.7414 -4.5743 5.8772 37 1 -7.0028 -5.1597 6.7217 38 1 -8.4996 -6.5198 5.2759 39 1 -7.7111 -7.2356 3.0582 40 1 -3.7813 -6.2100 1.5652 41 1 2.7237 -6.1092 0.7425 42 1 1.2982 -6.7387 -1.9789 43 1 2.7388 -7.6488 -1.2735 44 1 1.3603 -8.2480 0.7706 45 1 -0.0810 -7.3383 0.0661 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483592154.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:38 Heat of formation + Delta-G solvation = 109.156182 kcal Electronic energy + Delta-G solvation = -28498.548398 eV Core-core repulsion = 24518.662172 eV Total energy + Delta-G solvation = -3979.886226 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.88446 -41.14551 -40.56536 -38.26999 -36.57802 -35.13441 -34.67713 -33.60925 -32.95425 -31.67737 -30.82199 -29.45426 -26.11092 -25.37223 -24.94333 -23.68251 -23.11402 -23.00569 -22.21203 -21.32698 -21.10154 -19.85751 -19.12787 -17.70470 -17.51690 -17.37424 -16.94341 -16.75338 -16.61820 -16.41378 -15.90422 -15.80364 -15.38860 -15.16303 -15.04357 -14.87124 -14.59621 -14.29466 -14.19541 -13.94629 -13.64989 -13.15369 -13.05626 -12.78323 -12.67273 -12.45779 -12.39779 -12.23434 -12.04552 -11.81680 -11.63082 -11.23238 -11.06512 -11.02643 -10.95675 -10.80414 -10.75738 -10.37367 -9.90428 -9.42976 -8.97937 -7.90966 -5.20448 -0.52220 0.14852 0.70420 0.88402 1.05606 1.49825 1.51177 1.59505 2.20501 2.39472 2.58316 2.71677 3.02101 3.19242 3.32924 3.43439 3.62217 3.68537 3.88324 3.94923 3.99215 4.01753 4.05975 4.17923 4.21254 4.22717 4.32966 4.40317 4.51454 4.60782 4.68818 4.69727 4.86716 4.95120 4.96616 5.09319 5.11829 5.17277 5.21763 5.34563 5.42493 5.43336 5.53946 5.64156 5.83355 6.13464 6.28915 6.65161 6.77898 7.31839 7.36727 8.10551 8.34433 9.31797 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009778 B = 0.002882 C = 0.002335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2862.753960 B = 9712.956105 C =11989.673934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.075 4.075 3 Si 0.971 3.029 4 H -0.292 1.292 5 H -0.299 1.299 6 H -0.266 1.266 7 C -0.240 4.240 8 H 0.080 0.920 9 N -0.743 5.743 10 C 0.150 3.850 11 C 0.181 3.819 12 H 0.059 0.941 13 N -0.697 5.697 14 C 0.598 3.402 15 O -0.580 6.580 16 C -0.292 4.292 17 C 0.106 3.894 18 N -0.298 5.298 19 N -0.317 5.317 20 C 0.325 3.675 21 C -0.170 4.170 22 C -0.048 4.048 23 C -0.166 4.166 24 C 0.122 3.878 25 N -0.532 5.532 26 C 0.147 3.853 27 C -0.163 4.163 28 C -0.164 4.164 29 C -0.184 4.184 30 H 0.248 0.752 31 H 0.374 0.626 32 H 0.044 0.956 33 H 0.038 0.962 34 H 0.408 0.592 35 H 0.223 0.777 36 H 0.146 0.854 37 H 0.180 0.820 38 H 0.185 0.815 39 H 0.197 0.803 40 H 0.196 0.804 41 H 0.123 0.877 42 H 0.081 0.919 43 H 0.116 0.884 44 H 0.102 0.898 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.455 -17.359 13.107 24.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.267 4.267 3 Si 0.801 3.199 4 H -0.219 1.219 5 H -0.226 1.226 6 H -0.190 1.190 7 C -0.371 4.371 8 H 0.098 0.902 9 N -0.386 5.386 10 C 0.024 3.976 11 C 0.076 3.924 12 H 0.077 0.923 13 N -0.345 5.345 14 C 0.387 3.613 15 O -0.462 6.462 16 C -0.306 4.306 17 C -0.083 4.083 18 N -0.116 5.116 19 N -0.091 5.091 20 C 0.100 3.900 21 C -0.192 4.192 22 C -0.074 4.074 23 C -0.185 4.185 24 C -0.036 4.036 25 N -0.246 5.246 26 C -0.001 4.001 27 C -0.183 4.183 28 C -0.201 4.201 29 C -0.221 4.221 30 H 0.057 0.943 31 H 0.206 0.794 32 H 0.062 0.938 33 H 0.056 0.944 34 H 0.244 0.756 35 H 0.239 0.761 36 H 0.163 0.837 37 H 0.197 0.803 38 H 0.202 0.798 39 H 0.213 0.787 40 H 0.213 0.787 41 H 0.141 0.859 42 H 0.100 0.900 43 H 0.134 0.866 44 H 0.120 0.880 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -11.826 -17.656 12.756 24.785 hybrid contribution 0.348 1.520 -0.121 1.564 sum -11.478 -16.136 12.635 23.490 Atomic orbital electron populations 1.69838 1.06646 1.25820 1.59569 1.25537 0.96257 1.01014 1.03875 0.85168 0.77851 0.79700 0.77180 1.21928 1.22559 1.19040 1.19625 0.91595 0.85016 1.40897 0.90178 1.42538 1.05667 1.00912 1.89474 1.21051 0.93291 0.83710 0.99591 1.20566 0.89462 0.93445 0.88951 0.92295 1.45619 1.14149 1.54102 1.20679 1.17232 0.81088 0.77804 0.85216 1.90662 1.76907 1.44093 1.34515 1.20345 0.97317 1.14111 0.98843 1.24705 0.97913 0.95388 0.90298 1.77194 0.98067 1.15397 1.20913 1.45596 1.11339 1.39575 1.12625 1.18063 0.83252 0.96907 0.91746 1.21830 0.99805 1.03132 0.94459 1.22022 0.90695 0.93370 1.01326 1.22684 1.03014 0.98297 0.94535 1.23245 0.89164 0.95651 0.95539 1.66850 1.06508 1.14320 1.36921 1.23207 0.93125 0.95314 0.88484 1.22571 1.01784 0.89988 1.03916 1.22978 1.02622 1.02601 0.91928 1.23198 0.99483 0.97775 1.01643 0.94286 0.79378 0.93827 0.94431 0.75586 0.76087 0.83652 0.80270 0.79808 0.78652 0.78694 0.85911 0.90031 0.86622 0.87997 0.88878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.44 13.06 21.65 0.28 -59.16 16 2 C -0.07 -4.24 5.50 84.86 0.47 -3.77 16 3 Si 0.97 45.89 29.55 68.60 2.03 47.91 16 4 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 5 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 6 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 7 C -0.24 -13.02 9.99 84.03 0.84 -12.18 16 8 H 0.08 4.13 7.83 -2.91 -0.02 4.10 16 9 N -0.74 -36.70 5.43 -343.45 -1.87 -38.56 16 10 C 0.15 5.72 5.80 86.38 0.50 6.22 16 11 C 0.18 6.17 2.43 44.99 0.11 6.28 16 12 H 0.06 2.38 7.34 -2.39 -0.02 2.36 16 13 N -0.70 -23.03 4.49 -445.81 -2.00 -25.03 16 14 C 0.60 21.18 7.14 86.66 0.62 21.80 16 15 O -0.58 -23.47 13.91 -4.04 -0.06 -23.53 16 16 C -0.29 -9.31 6.13 -20.14 -0.12 -9.44 16 17 C 0.11 3.02 11.50 85.67 0.99 4.00 16 18 N -0.30 -8.78 11.74 -56.22 -0.66 -9.44 16 19 N -0.32 -9.31 3.76 -191.05 -0.72 -10.03 16 20 C 0.32 8.18 7.54 132.77 1.00 9.18 16 21 C -0.17 -3.27 9.69 22.48 0.22 -3.05 16 22 C -0.05 -0.52 10.17 22.45 0.23 -0.30 16 23 C -0.17 -1.40 10.11 22.38 0.23 -1.17 16 24 C 0.12 1.64 11.18 84.66 0.95 2.59 16 25 N -0.53 -12.11 9.82 -192.80 -1.89 -14.00 16 26 C 0.15 4.52 10.86 84.21 0.91 5.44 16 27 C -0.16 -4.49 5.36 -10.79 -0.06 -4.54 16 28 C -0.16 -4.18 10.18 30.62 0.31 -3.87 16 29 C -0.18 -5.04 9.73 30.62 0.30 -4.75 16 30 H 0.25 14.93 8.31 -92.71 -0.77 14.16 16 31 H 0.37 20.25 7.33 -92.71 -0.68 19.57 16 32 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.41 12.43 7.56 -92.71 -0.70 11.72 16 35 H 0.22 4.98 7.50 -2.91 -0.02 4.96 16 36 H 0.15 2.83 7.67 -2.91 -0.02 2.81 16 37 H 0.18 0.65 8.06 -2.91 -0.02 0.62 16 38 H 0.18 0.05 8.06 -2.91 -0.02 0.02 16 39 H 0.20 1.28 8.06 -2.91 -0.02 1.26 16 40 H 0.20 5.73 8.03 -2.91 -0.02 5.71 16 41 H 0.12 2.93 8.11 -2.39 -0.02 2.91 16 42 H 0.08 2.30 8.05 -2.39 -0.02 2.28 16 43 H 0.12 2.34 8.14 -2.39 -0.02 2.32 16 44 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 45 H 0.09 3.12 5.00 -2.38 -0.01 3.11 16 Total: -1.00 -76.10 385.87 2.26 -73.84 By element: Atomic # 1 Polarization: 45.91 SS G_CDS: -0.34 Total: 45.58 kcal Atomic # 6 Polarization: 4.95 SS G_CDS: 7.48 Total: 12.43 kcal Atomic # 7 Polarization: -149.37 SS G_CDS: -6.86 Total: -156.23 kcal Atomic # 8 Polarization: -23.47 SS G_CDS: -0.06 Total: -23.53 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.91 kcal Total: -76.10 2.26 -73.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483592154.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.996 kcal (2) G-P(sol) polarization free energy of solvation -76.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds