Wall clock time and date at job start Sat Apr 11 2020 06:21:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 119.99559 * 2 1 4 4 H 1.48500 * 109.46951 * 269.99854 * 3 2 1 5 5 H 1.48500 * 109.47313 * 30.00170 * 3 2 1 6 6 H 1.48501 * 109.46991 * 150.00211 * 3 2 1 7 7 C 1.38801 * 120.00176 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00073 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00093 * 0.02562 * 7 2 1 10 10 C 1.46505 * 119.99992 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47212 * 179.97438 * 10 9 7 12 12 H 1.09000 * 109.47325 * 294.99862 * 11 10 9 13 13 N 1.46500 * 109.47170 * 54.99826 * 11 10 9 14 14 C 1.34779 * 120.00196 * 204.99986 * 13 11 10 15 15 O 1.21606 * 119.99824 * 0.02562 * 14 13 11 16 16 C 1.47428 * 119.99876 * 179.97438 * 14 13 11 17 17 C 1.41364 * 126.41023 * 359.69519 * 16 14 13 18 18 N 1.30443 * 108.08197 * 179.81694 * 17 16 14 19 19 N 1.39937 * 108.91405 * 0.43956 * 18 17 16 20 20 C 1.39807 * 125.77736 * 179.71330 * 19 18 17 21 21 C 1.38947 * 119.68501 * 359.73170 * 20 19 18 22 22 C 1.38427 * 119.10544 * 179.77094 * 21 20 19 23 23 C 1.38794 * 118.47805 * 0.49154 * 22 21 20 24 24 C 1.38124 * 119.29789 * 359.75009 * 23 22 21 25 25 N 1.31895 * 120.84185 * 359.97438 * 24 23 22 26 26 C 1.34630 * 108.44533 * 359.71798 * 19 18 17 27 27 C 1.52994 * 109.47404 * 174.99693 * 11 10 9 28 28 C 1.52999 * 117.50412 * 248.74803 * 27 11 10 29 29 C 1.53002 * 117.50104 * 180.08511 * 27 11 10 30 30 H 0.97001 * 120.00803 * 359.97438 * 1 2 3 31 31 H 0.96996 * 120.00401 * 359.97438 * 9 7 2 32 32 H 1.09002 * 109.47068 * 299.99856 * 10 9 7 33 33 H 1.09001 * 109.47372 * 59.99943 * 10 9 7 34 34 H 0.96998 * 120.00051 * 24.99940 * 13 11 10 35 35 H 1.08004 * 125.95669 * 359.97438 * 17 16 14 36 36 H 1.07999 * 120.45118 * 359.97438 * 21 20 19 37 37 H 1.08001 * 120.75971 * 180.26440 * 22 21 20 38 38 H 1.08000 * 120.35180 * 179.72831 * 23 22 21 39 39 H 1.08009 * 119.58352 * 179.97438 * 24 23 22 40 40 H 1.07993 * 126.31087 * 179.97438 * 26 19 18 41 41 H 1.09003 * 115.54830 * 34.41759 * 27 11 10 42 42 H 1.09003 * 117.49323 * 359.97438 * 28 27 11 43 43 H 1.09003 * 117.50071 * 145.01968 * 28 27 11 44 44 H 1.09000 * 117.50257 * 214.97832 * 29 27 11 45 45 H 1.09002 * 117.49965 * 359.97438 * 29 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4403 0.7000 7 6 2.0102 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0016 10 6 2.0582 -3.6567 -0.0016 11 6 1.0640 -4.8197 -0.0022 12 1 0.4975 -4.8139 0.9289 13 7 0.1449 -4.6758 -1.1340 14 6 -1.0795 -5.2367 -1.0832 15 8 -1.4216 -5.8619 -0.0978 16 6 -2.0046 -5.0915 -2.2219 17 6 -1.7520 -4.3923 -3.4243 18 7 -2.8084 -4.4958 -4.1825 19 7 -3.7784 -5.2464 -3.5088 20 6 -5.0487 -5.5669 -3.9970 21 6 -5.4350 -5.1211 -5.2550 22 6 -6.6936 -5.4493 -5.7286 23 6 -7.5286 -6.2066 -4.9188 24 6 -7.0804 -6.6113 -3.6766 25 7 -5.8734 -6.2875 -3.2547 26 6 -3.2814 -5.6078 -2.3109 27 6 1.8249 -6.1410 -0.1280 28 6 1.6674 -6.9257 -1.4320 29 6 1.0021 -7.4308 -0.1493 30 1 -0.4851 0.8400 0.0004 31 1 0.3556 -2.3881 -0.0016 32 1 2.6855 -3.7140 -0.8911 33 1 2.6842 -3.7148 0.8888 34 1 0.4176 -4.1769 -1.9198 35 1 -0.8420 -3.8664 -3.6729 36 1 -4.7611 -4.5292 -5.8567 37 1 -7.0198 -5.1206 -6.7042 38 1 -8.5185 -6.4762 -5.2563 39 1 -7.7266 -7.2003 -3.0424 40 1 -3.7885 -6.1932 -1.5583 41 1 2.7971 -6.1723 0.3638 42 1 1.0213 -6.5006 -2.2002 43 1 2.5359 -7.4735 -1.7978 44 1 1.4332 -8.3108 0.3282 45 1 -0.0813 -7.3380 -0.0732 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483592162.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:41 Heat of formation + Delta-G solvation = 134.994029 kcal Electronic energy + Delta-G solvation = -28684.190112 eV Core-core repulsion = 24705.424299 eV Total energy + Delta-G solvation = -3978.765813 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.88751 -40.33568 -39.52289 -36.91205 -34.85216 -34.08542 -33.17645 -32.88973 -31.19807 -30.61738 -29.81216 -28.02051 -24.76699 -24.21937 -23.96254 -22.55243 -22.17148 -21.47345 -21.28072 -20.09115 -19.55810 -18.79524 -17.27500 -16.88149 -16.66382 -16.06359 -15.96514 -15.75169 -15.69276 -15.06832 -14.60779 -14.52468 -14.26604 -13.92819 -13.70013 -13.48798 -13.29497 -13.22759 -12.85711 -12.79735 -12.49142 -12.03013 -11.59024 -11.31626 -11.28862 -11.14704 -10.86941 -10.81529 -10.75657 -10.34424 -10.18682 -10.09855 -10.05473 -9.76870 -9.58231 -9.49475 -9.34287 -8.89735 -8.65808 -8.46653 -6.93888 -5.75883 -3.05790 0.28211 0.75221 1.70182 1.80303 2.11452 3.37809 3.43356 3.48123 3.49398 3.50932 3.66676 3.94060 4.13375 4.16613 4.44364 4.55589 4.58280 4.63386 4.76342 4.89710 4.98214 5.10266 5.24722 5.25726 5.27935 5.30738 5.53834 5.56727 5.56843 5.68585 5.72044 5.84919 5.91538 6.03668 6.06875 6.08841 6.22247 6.28964 6.38846 6.53595 6.60183 6.74108 6.74517 6.99992 7.07481 7.54999 7.69984 7.93316 8.41621 8.60601 9.53607 10.09778 10.45260 11.46136 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010228 B = 0.002903 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2737.013181 B = 9643.723306 C =11704.794907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.012 4.012 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.241 4.241 8 H 0.071 0.929 9 N -0.731 5.731 10 C 0.148 3.852 11 C 0.170 3.830 12 H 0.092 0.908 13 N -0.703 5.703 14 C 0.597 3.403 15 O -0.547 6.547 16 C -0.276 4.276 17 C 0.107 3.893 18 N -0.288 5.288 19 N -0.319 5.319 20 C 0.370 3.630 21 C -0.161 4.161 22 C -0.052 4.052 23 C -0.187 4.187 24 C 0.134 3.866 25 N -0.505 5.505 26 C 0.151 3.849 27 C -0.160 4.160 28 C -0.177 4.177 29 C -0.187 4.187 30 H 0.255 0.745 31 H 0.386 0.614 32 H 0.027 0.973 33 H 0.034 0.966 34 H 0.403 0.597 35 H 0.202 0.798 36 H 0.151 0.849 37 H 0.145 0.855 38 H 0.143 0.857 39 H 0.168 0.832 40 H 0.195 0.805 41 H 0.109 0.891 42 H 0.092 0.908 43 H 0.085 0.915 44 H 0.083 0.917 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.405 -16.264 -11.882 23.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.208 4.208 3 Si 0.737 3.263 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.372 4.372 8 H 0.088 0.912 9 N -0.376 5.376 10 C 0.020 3.980 11 C 0.066 3.934 12 H 0.110 0.890 13 N -0.352 5.352 14 C 0.384 3.616 15 O -0.427 6.427 16 C -0.290 4.290 17 C -0.083 4.083 18 N -0.105 5.105 19 N -0.094 5.094 20 C 0.143 3.857 21 C -0.183 4.183 22 C -0.079 4.079 23 C -0.208 4.208 24 C -0.024 4.024 25 N -0.218 5.218 26 C 0.005 3.995 27 C -0.180 4.180 28 C -0.215 4.215 29 C -0.224 4.224 30 H 0.065 0.935 31 H 0.221 0.779 32 H 0.044 0.956 33 H 0.052 0.948 34 H 0.238 0.762 35 H 0.219 0.781 36 H 0.169 0.831 37 H 0.163 0.837 38 H 0.160 0.840 39 H 0.185 0.815 40 H 0.212 0.788 41 H 0.127 0.873 42 H 0.110 0.890 43 H 0.104 0.896 44 H 0.101 0.899 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -11.808 -16.551 -11.481 23.350 hybrid contribution 0.468 1.367 -0.356 1.488 sum -11.340 -15.184 -11.837 22.344 Atomic orbital electron populations 1.69669 1.05060 1.25633 1.57429 1.24742 0.95486 0.97657 1.02926 0.86206 0.78658 0.83933 0.77457 1.21757 1.21848 1.20788 1.19198 0.91004 0.84043 1.43000 0.91152 1.42357 1.06033 0.99697 1.89561 1.20917 0.93050 0.85107 0.98966 1.20745 0.90075 0.92761 0.89848 0.89003 1.45720 1.14224 1.54445 1.20842 1.17051 0.80904 0.78461 0.85174 1.90697 1.76325 1.42534 1.33131 1.20451 0.97147 1.12453 0.98908 1.24404 0.97340 0.95530 0.90992 1.77265 0.97922 1.14989 1.20305 1.45416 1.10466 1.40400 1.13111 1.17724 0.83262 0.94340 0.90351 1.21681 0.98347 1.02848 0.95413 1.21562 0.92183 0.94236 0.99883 1.22191 1.01797 1.00815 0.95975 1.22564 0.90024 0.95663 0.94146 1.66885 1.05118 1.13983 1.35837 1.23143 0.93026 0.95265 0.88025 1.22695 1.00736 0.92540 1.01987 1.22885 1.02875 1.04028 0.91682 1.23340 1.01648 0.96686 1.00737 0.93531 0.77938 0.95562 0.94826 0.76152 0.78113 0.83125 0.83728 0.83950 0.81480 0.78819 0.87331 0.88954 0.89642 0.89879 0.86476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.91 13.06 55.49 0.72 -27.19 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 3 Si 0.91 22.22 29.55 -169.99 -5.02 17.20 16 4 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 7 C -0.24 -6.58 9.99 -15.06 -0.15 -6.73 16 8 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 9 N -0.73 -17.87 5.43 -59.91 -0.33 -18.19 16 10 C 0.15 2.83 5.80 -4.04 -0.02 2.81 16 11 C 0.17 2.86 2.59 -67.94 -0.18 2.69 16 12 H 0.09 1.76 7.58 -51.93 -0.39 1.37 16 13 N -0.70 -11.16 3.05 -54.88 -0.17 -11.32 16 14 C 0.60 9.96 6.65 -12.52 -0.08 9.88 16 15 O -0.55 -10.44 13.93 5.27 0.07 -10.37 16 16 C -0.28 -4.14 6.13 -105.05 -0.64 -4.78 16 17 C 0.11 1.46 11.50 -16.95 -0.20 1.27 16 18 N -0.29 -4.07 11.74 30.88 0.36 -3.70 16 19 N -0.32 -4.45 3.76 -11.74 -0.04 -4.49 16 20 C 0.37 4.54 7.54 -154.38 -1.16 3.38 16 21 C -0.16 -1.58 9.69 -39.25 -0.38 -1.96 16 22 C -0.05 -0.35 10.17 -39.31 -0.40 -0.75 16 23 C -0.19 -1.11 10.11 -39.42 -0.40 -1.51 16 24 C 0.13 1.03 11.18 -17.57 -0.20 0.83 16 25 N -0.51 -5.72 9.82 -12.29 -0.12 -5.84 16 26 C 0.15 2.18 10.86 -16.41 -0.18 2.00 16 27 C -0.16 -2.28 5.70 -90.62 -0.52 -2.80 16 28 C -0.18 -2.31 9.74 -26.69 -0.26 -2.57 16 29 C -0.19 -2.64 9.82 -26.69 -0.26 -2.90 16 30 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 31 H 0.39 10.13 7.33 -40.82 -0.30 9.83 16 32 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.40 6.01 7.56 -40.82 -0.31 5.70 16 35 H 0.20 2.21 7.50 -52.48 -0.39 1.82 16 36 H 0.15 1.45 7.67 -52.49 -0.40 1.04 16 37 H 0.14 0.55 8.06 -52.49 -0.42 0.12 16 38 H 0.14 0.40 8.06 -52.49 -0.42 -0.02 16 39 H 0.17 0.76 8.06 -52.48 -0.42 0.33 16 40 H 0.19 2.60 8.03 -52.49 -0.42 2.18 16 41 H 0.11 1.43 8.11 -51.93 -0.42 1.00 16 42 H 0.09 1.23 6.67 -51.93 -0.35 0.88 16 43 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 44 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.12 1.92 5.01 -51.93 -0.26 1.66 16 LS Contribution 382.98 15.07 5.77 5.77 Total: -1.00 -34.00 382.98 -9.63 -43.62 By element: Atomic # 1 Polarization: 21.86 SS G_CDS: -5.75 Total: 16.11 kcal Atomic # 6 Polarization: 3.54 SS G_CDS: -5.12 Total: -1.58 kcal Atomic # 7 Polarization: -71.17 SS G_CDS: 0.43 Total: -70.75 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: 0.07 Total: -10.37 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.00 -9.63 -43.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483592162.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.615 kcal (2) G-P(sol) polarization free energy of solvation -33.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 144.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.621 kcal (6) G-S(sol) free energy of system = (1) + (5) 134.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds