Wall clock time and date at job start Sat Apr 11 2020 06:21:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 119.99559 * 2 1 4 4 H 1.48500 * 109.46951 * 269.99854 * 3 2 1 5 5 H 1.48500 * 109.47313 * 30.00170 * 3 2 1 6 6 H 1.48501 * 109.46991 * 150.00211 * 3 2 1 7 7 C 1.38801 * 120.00176 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00073 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00093 * 0.02562 * 7 2 1 10 10 C 1.46505 * 119.99992 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47212 * 179.97438 * 10 9 7 12 12 H 1.09000 * 109.47325 * 294.99862 * 11 10 9 13 13 N 1.46500 * 109.47170 * 54.99826 * 11 10 9 14 14 C 1.34779 * 120.00196 * 204.99986 * 13 11 10 15 15 O 1.21606 * 119.99824 * 0.02562 * 14 13 11 16 16 C 1.47428 * 119.99876 * 179.97438 * 14 13 11 17 17 C 1.41364 * 126.41023 * 359.69519 * 16 14 13 18 18 N 1.30443 * 108.08197 * 179.81694 * 17 16 14 19 19 N 1.39937 * 108.91405 * 0.43956 * 18 17 16 20 20 C 1.39807 * 125.77736 * 179.71330 * 19 18 17 21 21 C 1.38947 * 119.68501 * 359.73170 * 20 19 18 22 22 C 1.38427 * 119.10544 * 179.77094 * 21 20 19 23 23 C 1.38794 * 118.47805 * 0.49154 * 22 21 20 24 24 C 1.38124 * 119.29789 * 359.75009 * 23 22 21 25 25 N 1.31895 * 120.84185 * 359.97438 * 24 23 22 26 26 C 1.34630 * 108.44533 * 359.71798 * 19 18 17 27 27 C 1.52994 * 109.47404 * 174.99693 * 11 10 9 28 28 C 1.52999 * 117.50412 * 248.74803 * 27 11 10 29 29 C 1.53002 * 117.50104 * 180.08511 * 27 11 10 30 30 H 0.97001 * 120.00803 * 359.97438 * 1 2 3 31 31 H 0.96996 * 120.00401 * 359.97438 * 9 7 2 32 32 H 1.09002 * 109.47068 * 299.99856 * 10 9 7 33 33 H 1.09001 * 109.47372 * 59.99943 * 10 9 7 34 34 H 0.96998 * 120.00051 * 24.99940 * 13 11 10 35 35 H 1.08004 * 125.95669 * 359.97438 * 17 16 14 36 36 H 1.07999 * 120.45118 * 359.97438 * 21 20 19 37 37 H 1.08001 * 120.75971 * 180.26440 * 22 21 20 38 38 H 1.08000 * 120.35180 * 179.72831 * 23 22 21 39 39 H 1.08009 * 119.58352 * 179.97438 * 24 23 22 40 40 H 1.07993 * 126.31087 * 179.97438 * 26 19 18 41 41 H 1.09003 * 115.54830 * 34.41759 * 27 11 10 42 42 H 1.09003 * 117.49323 * 359.97438 * 28 27 11 43 43 H 1.09003 * 117.50071 * 145.01968 * 28 27 11 44 44 H 1.09000 * 117.50257 * 214.97832 * 29 27 11 45 45 H 1.09002 * 117.49965 * 359.97438 * 29 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4403 0.7000 7 6 2.0102 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0016 10 6 2.0582 -3.6567 -0.0016 11 6 1.0640 -4.8197 -0.0022 12 1 0.4975 -4.8139 0.9289 13 7 0.1449 -4.6758 -1.1340 14 6 -1.0795 -5.2367 -1.0832 15 8 -1.4216 -5.8619 -0.0978 16 6 -2.0046 -5.0915 -2.2219 17 6 -1.7520 -4.3923 -3.4243 18 7 -2.8084 -4.4958 -4.1825 19 7 -3.7784 -5.2464 -3.5088 20 6 -5.0487 -5.5669 -3.9970 21 6 -5.4350 -5.1211 -5.2550 22 6 -6.6936 -5.4493 -5.7286 23 6 -7.5286 -6.2066 -4.9188 24 6 -7.0804 -6.6113 -3.6766 25 7 -5.8734 -6.2875 -3.2547 26 6 -3.2814 -5.6078 -2.3109 27 6 1.8249 -6.1410 -0.1280 28 6 1.6674 -6.9257 -1.4320 29 6 1.0021 -7.4308 -0.1493 30 1 -0.4851 0.8400 0.0004 31 1 0.3556 -2.3881 -0.0016 32 1 2.6855 -3.7140 -0.8911 33 1 2.6842 -3.7148 0.8888 34 1 0.4176 -4.1769 -1.9198 35 1 -0.8420 -3.8664 -3.6729 36 1 -4.7611 -4.5292 -5.8567 37 1 -7.0198 -5.1206 -6.7042 38 1 -8.5185 -6.4762 -5.2563 39 1 -7.7266 -7.2003 -3.0424 40 1 -3.7885 -6.1932 -1.5583 41 1 2.7971 -6.1723 0.3638 42 1 1.0213 -6.5006 -2.2002 43 1 2.5359 -7.4735 -1.7978 44 1 1.4332 -8.3108 0.3282 45 1 -0.0813 -7.3380 -0.0732 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483592162.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:40 Heat of formation + Delta-G solvation = 114.037592 kcal Electronic energy + Delta-G solvation = -28685.098851 eV Core-core repulsion = 24705.424299 eV Total energy + Delta-G solvation = -3979.674552 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.89979 -41.22266 -40.66979 -38.22103 -36.50666 -35.07510 -34.57675 -33.61247 -32.98629 -31.68267 -30.82788 -29.55516 -26.10879 -25.41782 -24.94742 -23.64966 -23.38991 -22.89740 -22.22554 -21.27415 -20.82009 -19.85633 -19.15704 -17.72715 -17.52049 -17.26299 -17.14367 -16.75428 -16.73639 -16.55377 -15.93029 -15.53419 -15.34176 -15.15987 -15.06372 -14.86492 -14.64656 -14.26636 -14.20326 -13.94766 -13.57448 -13.09216 -13.05906 -12.82144 -12.69090 -12.62460 -12.40662 -12.26111 -12.06402 -11.80559 -11.63544 -11.24974 -11.02786 -10.96418 -10.89009 -10.77646 -10.73207 -10.37822 -9.92111 -9.43925 -8.97193 -7.90654 -5.19985 -0.52681 0.14593 0.69495 0.87409 1.04919 1.50023 1.51228 1.59548 2.22487 2.39985 2.58388 2.71429 3.00217 3.13264 3.32186 3.43815 3.64142 3.70023 3.87880 3.93885 3.98939 4.03373 4.06078 4.15472 4.21907 4.23719 4.34795 4.45013 4.55801 4.57937 4.69477 4.71129 4.88396 4.94194 4.96008 5.10543 5.11613 5.20302 5.21335 5.32423 5.42476 5.45082 5.54294 5.63741 5.82792 6.12722 6.29350 6.62667 6.77429 7.29825 7.37187 8.11295 8.35036 9.32097 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010228 B = 0.002903 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2737.013181 B = 9643.723306 C =11704.794907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.075 4.075 3 Si 0.971 3.029 4 H -0.286 1.286 5 H -0.302 1.302 6 H -0.270 1.270 7 C -0.239 4.239 8 H 0.080 0.920 9 N -0.743 5.743 10 C 0.150 3.850 11 C 0.180 3.820 12 H 0.062 0.938 13 N -0.697 5.697 14 C 0.597 3.403 15 O -0.577 6.577 16 C -0.293 4.293 17 C 0.106 3.894 18 N -0.297 5.297 19 N -0.317 5.317 20 C 0.325 3.675 21 C -0.170 4.170 22 C -0.048 4.048 23 C -0.165 4.165 24 C 0.122 3.878 25 N -0.532 5.532 26 C 0.147 3.853 27 C -0.163 4.163 28 C -0.162 4.162 29 C -0.192 4.192 30 H 0.248 0.752 31 H 0.374 0.626 32 H 0.043 0.957 33 H 0.038 0.962 34 H 0.409 0.591 35 H 0.222 0.778 36 H 0.146 0.854 37 H 0.180 0.820 38 H 0.185 0.815 39 H 0.197 0.803 40 H 0.196 0.804 41 H 0.126 0.874 42 H 0.087 0.913 43 H 0.109 0.891 44 H 0.101 0.899 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.614 -17.130 -13.650 24.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.267 4.267 3 Si 0.801 3.199 4 H -0.213 1.213 5 H -0.229 1.229 6 H -0.194 1.194 7 C -0.371 4.371 8 H 0.098 0.902 9 N -0.386 5.386 10 C 0.024 3.976 11 C 0.075 3.925 12 H 0.080 0.920 13 N -0.346 5.346 14 C 0.386 3.614 15 O -0.459 6.459 16 C -0.307 4.307 17 C -0.083 4.083 18 N -0.115 5.115 19 N -0.091 5.091 20 C 0.100 3.900 21 C -0.192 4.192 22 C -0.074 4.074 23 C -0.185 4.185 24 C -0.036 4.036 25 N -0.246 5.246 26 C -0.001 4.001 27 C -0.183 4.183 28 C -0.199 4.199 29 C -0.229 4.229 30 H 0.057 0.943 31 H 0.206 0.794 32 H 0.061 0.939 33 H 0.056 0.944 34 H 0.245 0.755 35 H 0.239 0.761 36 H 0.164 0.836 37 H 0.197 0.803 38 H 0.202 0.798 39 H 0.213 0.787 40 H 0.213 0.787 41 H 0.144 0.856 42 H 0.106 0.894 43 H 0.128 0.872 44 H 0.120 0.880 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -11.982 -17.443 -13.283 24.985 hybrid contribution 0.356 1.510 0.151 1.558 sum -11.626 -15.934 -13.132 23.696 Atomic orbital electron populations 1.69839 1.06626 1.25796 1.59621 1.25528 0.96251 1.00993 1.03916 0.85170 0.77646 0.79694 0.77403 1.21277 1.22866 1.19445 1.19618 0.91583 0.85032 1.40829 0.90209 1.42533 1.05671 1.00911 1.89460 1.21043 0.93307 0.83698 0.99577 1.20505 0.89507 0.93490 0.88992 0.91972 1.45629 1.14021 1.54311 1.20687 1.17248 0.81071 0.77889 0.85207 1.90676 1.76877 1.43941 1.34391 1.20339 0.97299 1.13971 0.99077 1.24694 0.97973 0.95359 0.90310 1.77198 0.98146 1.15390 1.20742 1.45600 1.11143 1.39696 1.12644 1.18061 0.83171 0.96928 0.91826 1.21832 0.99799 1.03004 0.94576 1.22026 0.90732 0.93386 1.01265 1.22682 1.02999 0.98288 0.94544 1.23243 0.89137 0.95650 0.95574 1.66850 1.06498 1.14508 1.36734 1.23209 0.93053 0.95274 0.88558 1.22614 1.01047 0.91009 1.03626 1.22956 1.03167 1.02920 0.90861 1.23279 1.00330 0.97186 1.02059 0.94307 0.79371 0.93879 0.94381 0.75523 0.76146 0.83650 0.80265 0.79807 0.78653 0.78719 0.85579 0.89442 0.87249 0.88039 0.88993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.35 13.06 21.65 0.28 -59.07 16 2 C -0.07 -4.24 5.50 84.86 0.47 -3.77 16 3 Si 0.97 45.86 29.55 68.60 2.03 47.88 16 4 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 5 H -0.30 -14.59 7.11 99.48 0.71 -13.88 16 6 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 7 C -0.24 -12.95 9.99 84.03 0.84 -12.11 16 8 H 0.08 4.10 7.83 -2.91 -0.02 4.08 16 9 N -0.74 -36.53 5.43 -343.45 -1.87 -38.39 16 10 C 0.15 5.69 5.80 86.38 0.50 6.19 16 11 C 0.18 6.11 2.59 44.99 0.12 6.23 16 12 H 0.06 2.49 7.58 -2.39 -0.02 2.47 16 13 N -0.70 -22.69 3.05 -445.81 -1.36 -24.05 16 14 C 0.60 20.92 6.65 86.66 0.58 21.50 16 15 O -0.58 -23.30 13.93 -4.05 -0.06 -23.36 16 16 C -0.29 -9.25 6.13 -20.14 -0.12 -9.37 16 17 C 0.11 2.98 11.50 85.67 0.99 3.97 16 18 N -0.30 -8.69 11.74 -56.22 -0.66 -9.35 16 19 N -0.32 -9.24 3.76 -191.05 -0.72 -9.96 16 20 C 0.32 8.14 7.54 132.77 1.00 9.14 16 21 C -0.17 -3.25 9.69 22.49 0.22 -3.04 16 22 C -0.05 -0.52 10.17 22.45 0.23 -0.29 16 23 C -0.17 -1.39 10.11 22.38 0.23 -1.16 16 24 C 0.12 1.63 11.18 84.66 0.95 2.58 16 25 N -0.53 -12.07 9.82 -192.80 -1.89 -13.97 16 26 C 0.15 4.51 10.86 84.21 0.91 5.43 16 27 C -0.16 -4.48 5.70 -10.80 -0.06 -4.55 16 28 C -0.16 -3.96 9.74 30.62 0.30 -3.66 16 29 C -0.19 -5.28 9.82 30.62 0.30 -4.98 16 30 H 0.25 14.90 8.31 -92.71 -0.77 14.13 16 31 H 0.37 20.16 7.33 -92.71 -0.68 19.48 16 32 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.41 12.33 7.56 -92.71 -0.70 11.63 16 35 H 0.22 4.95 7.50 -2.91 -0.02 4.93 16 36 H 0.15 2.82 7.67 -2.91 -0.02 2.80 16 37 H 0.18 0.64 8.06 -2.91 -0.02 0.61 16 38 H 0.18 0.04 8.06 -2.91 -0.02 0.02 16 39 H 0.20 1.28 8.06 -2.91 -0.02 1.25 16 40 H 0.20 5.71 8.03 -2.91 -0.02 5.69 16 41 H 0.13 3.03 8.11 -2.39 -0.02 3.01 16 42 H 0.09 2.24 6.67 -2.39 -0.02 2.22 16 43 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 44 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 45 H 0.09 3.09 5.01 -2.39 -0.01 3.08 16 Total: -1.00 -75.77 382.98 2.86 -72.92 By element: Atomic # 1 Polarization: 45.57 SS G_CDS: -0.33 Total: 45.24 kcal Atomic # 6 Polarization: 4.67 SS G_CDS: 7.43 Total: 12.10 kcal Atomic # 7 Polarization: -148.57 SS G_CDS: -6.21 Total: -154.79 kcal Atomic # 8 Polarization: -23.30 SS G_CDS: -0.06 Total: -23.36 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 2.03 Total: 47.88 kcal Total: -75.77 2.86 -72.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483592162.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.956 kcal (2) G-P(sol) polarization free energy of solvation -75.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.918 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds