Wall clock time and date at job start Sat Apr 11 2020 06:21:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86796 * 120.00307 * 2 1 4 4 H 1.48499 * 109.47282 * 239.99621 * 3 2 1 5 5 H 1.48497 * 109.47200 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47280 * 119.99995 * 3 2 1 7 7 C 1.38806 * 119.99640 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99918 * 180.02562 * 7 2 1 9 9 S 1.76193 * 120.00056 * 359.97438 * 7 2 1 10 10 C 1.81002 * 100.00049 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.47156 * 180.02562 * 10 9 7 12 12 O 1.21280 * 119.99781 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99795 * 179.97438 * 11 10 9 14 14 C 1.46497 * 119.99566 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.46983 * 180.02562 * 14 13 11 16 16 H 1.08998 * 112.95780 * 72.85754 * 15 14 13 17 17 C 1.53942 * 113.76204 * 204.50757 * 15 14 13 18 18 C 1.53933 * 86.34146 * 138.03930 * 17 15 14 19 19 N 1.47966 * 86.18301 * 336.27682 * 18 17 15 20 20 C 1.46900 * 110.99858 * 137.58099 * 19 18 17 21 21 C 1.52997 * 109.46889 * 70.64559 * 20 19 18 22 22 N 1.46503 * 109.47240 * 179.97438 * 21 20 19 23 23 C 1.34779 * 119.99839 * 180.02562 * 22 21 20 24 24 O 1.21280 * 119.99983 * 359.97438 * 23 22 21 25 25 C 1.50699 * 119.99796 * 179.97438 * 23 22 21 26 26 C 1.52998 * 117.50231 * 248.74821 * 25 23 22 27 27 C 1.52998 * 117.50253 * 180.08492 * 25 23 22 28 28 H 0.97010 * 119.99946 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.47115 * 60.00094 * 10 9 7 30 30 H 1.09001 * 109.46925 * 300.00251 * 10 9 7 31 31 H 0.96995 * 120.00011 * 0.02562 * 13 11 10 32 32 H 1.09001 * 109.47487 * 300.00114 * 14 13 11 33 33 H 1.09002 * 109.47182 * 60.00342 * 14 13 11 34 34 H 1.08997 * 113.73068 * 252.39524 * 17 15 14 35 35 H 1.08998 * 113.73274 * 23.57143 * 17 15 14 36 36 H 1.08990 * 113.76350 * 90.59912 * 18 17 15 37 37 H 1.09003 * 113.75711 * 221.96656 * 18 17 15 38 38 H 1.08994 * 109.47060 * 190.64234 * 20 19 18 39 39 H 1.08999 * 109.47403 * 310.64578 * 20 19 18 40 40 H 1.09006 * 109.47570 * 299.99969 * 21 20 19 41 41 H 1.08999 * 109.47082 * 59.99824 * 21 20 19 42 42 H 0.96995 * 119.99560 * 0.02562 * 22 21 20 43 43 H 1.09004 * 115.54654 * 34.41418 * 25 23 22 44 44 H 1.09002 * 117.49358 * 0.02562 * 26 25 23 45 45 H 1.09003 * 117.50214 * 145.01411 * 26 25 23 46 46 H 1.08995 * 117.50193 * 214.98195 * 27 25 23 47 47 H 1.09000 * 117.49298 * 0.02562 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2124 5 1 1.2854 2.7464 0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 16 1.1291 -2.7280 0.0019 10 6 2.5156 -3.8915 0.0029 11 6 1.9871 -5.3028 0.0036 12 8 0.7908 -5.5023 0.0029 13 7 2.8438 -6.3432 0.0039 14 6 2.3300 -7.7151 0.0039 15 6 3.5019 -8.6987 0.0049 16 1 4.0171 -8.7451 0.9643 17 6 3.1533 -10.0796 -0.5794 18 6 4.5200 -10.0165 -1.2849 19 7 4.4086 -8.5469 -1.1546 20 6 5.6901 -7.9559 -0.7469 21 6 6.6839 -8.0430 -1.9069 22 7 7.9619 -7.4531 -1.5005 23 6 8.9937 -7.4180 -2.3670 24 8 8.8643 -7.8752 -3.4828 25 6 10.3080 -6.8106 -1.9492 26 6 10.7225 -5.4967 -2.6146 27 6 11.4399 -6.7990 -2.9785 28 1 -0.4850 0.8401 -0.0004 29 1 3.1242 -3.7307 0.8928 30 1 3.1243 -3.7322 -0.8872 31 1 3.8006 -6.1837 0.0041 32 1 1.7211 -7.8751 0.8938 33 1 1.7216 -7.8753 -0.8862 34 1 3.0825 -10.8678 0.1701 35 1 2.3040 -10.0652 -1.2624 36 1 5.3346 -10.4485 -0.7037 37 1 4.4984 -10.3687 -2.3162 38 1 5.5386 -6.9110 -0.4760 39 1 6.0847 -8.5001 0.1112 40 1 6.8355 -9.0879 -2.1778 41 1 6.2894 -7.4988 -2.7649 42 1 8.0653 -7.0878 -0.6080 43 1 10.5803 -6.9529 -0.9033 44 1 10.0441 -5.0714 -3.3543 45 1 11.2677 -4.7747 -2.0067 46 1 12.4568 -6.9333 -2.6099 47 1 11.2337 -7.2303 -3.9581 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483632315.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:44 Heat of formation + Delta-G solvation = -15.837438 kcal Electronic energy + Delta-G solvation = -26417.587358 eV Core-core repulsion = 22535.432202 eV Total energy + Delta-G solvation = -3882.155156 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.79343 -40.16208 -38.84897 -36.75664 -35.44650 -34.28399 -32.42030 -31.85537 -30.01425 -27.64298 -27.49377 -25.46945 -24.43577 -23.56217 -22.84705 -22.14815 -20.53763 -20.43954 -19.92291 -17.93213 -17.88298 -16.83724 -16.61221 -16.25774 -16.01218 -15.79436 -15.36153 -15.19629 -14.94763 -14.79892 -14.64947 -14.19518 -14.04127 -13.89675 -13.26184 -13.02369 -12.92663 -12.63215 -12.56746 -12.40282 -11.97794 -11.85599 -11.76452 -11.68277 -11.24023 -11.09042 -11.05199 -11.03653 -11.03202 -10.94372 -10.75551 -10.22878 -9.81715 -9.49157 -9.42791 -9.22791 -9.05491 -8.82944 -8.22565 -6.48668 -6.20600 -3.91005 2.12439 2.58500 3.01851 3.14079 3.23729 3.26923 3.29731 3.41731 3.48333 3.76784 4.05954 4.21378 4.23282 4.31032 4.34226 4.40151 4.44701 4.58225 4.67672 4.75238 4.84850 4.91830 4.93322 5.14338 5.19329 5.21671 5.23297 5.29072 5.33245 5.40939 5.49670 5.52359 5.58933 5.64468 5.70259 5.74461 5.86662 5.89004 5.92286 5.99729 6.14562 6.56990 6.65550 7.06192 7.59816 7.73133 7.83794 8.35714 8.64821 9.24419 10.86769 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.007490 B = 0.002573 C = 0.001949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3737.533866 B =10879.953252 C =14360.413756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.071 0.929 9 S -0.059 6.059 10 C -0.153 4.153 11 C 0.531 3.469 12 O -0.518 6.518 13 N -0.733 5.733 14 C 0.142 3.858 15 C 0.020 3.980 16 H 0.086 0.914 17 C -0.135 4.135 18 C -0.001 4.001 19 N -0.466 5.466 20 C 0.008 3.992 21 C 0.124 3.876 22 N -0.727 5.727 23 C 0.543 3.457 24 O -0.538 6.538 25 C -0.198 4.198 26 C -0.151 4.151 27 C -0.148 4.148 28 H 0.269 0.731 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.393 0.607 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.098 0.902 36 H 0.071 0.929 37 H 0.093 0.907 38 H 0.083 0.917 39 H 0.049 0.951 40 H 0.068 0.932 41 H 0.079 0.921 42 H 0.402 0.598 43 H 0.124 0.876 44 H 0.101 0.899 45 H 0.106 0.894 46 H 0.103 0.897 47 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.441 -20.790 0.634 29.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.200 1.200 7 C -0.684 4.684 8 H 0.090 0.910 9 S 0.168 5.832 10 C -0.303 4.303 11 C 0.317 3.683 12 O -0.393 6.393 13 N -0.387 5.387 14 C 0.017 3.983 15 C -0.090 4.090 16 H 0.104 0.896 17 C -0.173 4.173 18 C -0.130 4.130 19 N -0.189 5.189 20 C -0.121 4.121 21 C 0.000 4.000 22 N -0.379 5.379 23 C 0.330 3.670 24 O -0.415 6.415 25 C -0.219 4.219 26 C -0.189 4.189 27 C -0.185 4.185 28 H 0.079 0.921 29 H 0.106 0.894 30 H 0.107 0.893 31 H 0.227 0.773 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.095 0.905 35 H 0.116 0.884 36 H 0.089 0.911 37 H 0.112 0.888 38 H 0.101 0.899 39 H 0.067 0.933 40 H 0.086 0.914 41 H 0.097 0.903 42 H 0.236 0.764 43 H 0.142 0.858 44 H 0.120 0.880 45 H 0.124 0.876 46 H 0.121 0.879 47 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 17.953 -20.948 -0.740 27.599 hybrid contribution 2.895 1.142 1.306 3.375 sum 20.848 -19.806 0.566 28.762 Atomic orbital electron populations 1.70008 1.05946 1.27548 1.46773 1.24990 0.95028 0.99005 0.94559 0.86228 0.79244 0.81274 0.78774 1.19932 1.20808 1.19972 1.22824 0.94846 0.91711 1.59043 0.91037 1.85396 1.04914 0.96232 1.96702 1.23522 1.06549 0.95540 1.04738 1.20285 0.86526 0.86259 0.75181 1.90701 1.15342 1.85594 1.47640 1.45891 1.09685 1.05383 1.77782 1.21183 0.94325 0.80128 1.02637 1.23804 0.95180 0.95994 0.94018 0.89583 1.23354 0.98385 0.95515 1.00029 1.23908 0.97261 0.89406 1.02387 1.68575 1.08418 1.11213 1.30685 1.22858 0.91224 1.01582 0.96447 1.21204 0.81971 0.99170 0.97622 1.45833 1.12378 1.62468 1.17243 1.19674 0.84406 0.78382 0.84553 1.90717 1.83369 1.46766 1.20650 1.22191 0.94763 1.04654 1.00265 1.22985 1.03104 0.90085 1.02708 1.22973 0.95479 1.00340 0.99754 0.92132 0.89441 0.89317 0.77263 0.91088 0.90838 0.90454 0.88362 0.91102 0.88842 0.89874 0.93307 0.91390 0.90268 0.76415 0.85833 0.88048 0.87579 0.87852 0.87376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.26 13.22 55.49 0.73 -25.53 16 2 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 3 Si 0.92 21.42 29.55 -169.99 -5.02 16.40 16 4 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 7 C -0.54 -15.32 9.50 30.94 0.29 -15.03 16 8 H 0.07 1.93 7.80 -52.48 -0.41 1.52 16 9 S -0.06 -1.61 20.57 -107.50 -2.21 -3.83 16 10 C -0.15 -3.11 6.16 36.01 0.22 -2.89 16 11 C 0.53 10.03 7.85 -10.98 -0.09 9.94 16 12 O -0.52 -11.91 15.86 5.56 0.09 -11.82 16 13 N -0.73 -9.84 5.50 -60.30 -0.33 -10.17 16 14 C 0.14 1.61 5.80 -4.04 -0.02 1.58 16 15 C 0.02 0.15 3.40 -66.65 -0.23 -0.08 16 16 H 0.09 0.56 7.80 -51.93 -0.40 0.15 16 17 C -0.13 -0.84 7.84 -25.80 -0.20 -1.04 16 18 C 0.00 -0.01 7.10 -2.76 -0.02 -0.03 16 19 N -0.47 -3.75 5.95 -230.67 -1.37 -5.12 16 20 C 0.01 0.05 4.74 -3.83 -0.02 0.04 16 21 C 0.12 1.01 5.74 -4.04 -0.02 0.99 16 22 N -0.73 -5.31 5.56 -60.29 -0.33 -5.64 16 23 C 0.54 5.23 7.61 -10.98 -0.08 5.15 16 24 O -0.54 -7.44 16.26 5.56 0.09 -7.35 16 25 C -0.20 -1.33 6.19 -91.77 -0.57 -1.89 16 26 C -0.15 -0.96 10.24 -26.69 -0.27 -1.23 16 27 C -0.15 -0.98 10.05 -26.69 -0.27 -1.24 16 28 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 29 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 30 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 31 H 0.39 4.30 6.59 -40.82 -0.27 4.03 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.07 0.95 7.91 -51.93 -0.41 0.53 16 34 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.10 0.67 7.94 -51.93 -0.41 0.26 16 36 H 0.07 0.37 7.78 -51.93 -0.40 -0.04 16 37 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.08 0.57 6.55 -51.93 -0.34 0.23 16 39 H 0.05 0.26 7.69 -51.93 -0.40 -0.14 16 40 H 0.07 0.59 7.55 -51.93 -0.39 0.20 16 41 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.40 1.82 8.47 -40.82 -0.35 1.48 16 43 H 0.12 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.11 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.11 0.89 7.67 -51.93 -0.40 0.49 16 LS Contribution 404.98 15.07 6.10 6.10 Total: -1.00 -37.30 404.98 -11.18 -48.48 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -7.55 Total: 2.19 kcal Atomic # 6 Polarization: -2.35 SS G_CDS: -1.37 Total: -3.73 kcal Atomic # 7 Polarization: -45.16 SS G_CDS: -1.30 Total: -46.46 kcal Atomic # 8 Polarization: -19.34 SS G_CDS: 0.18 Total: -19.17 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -37.30 -11.18 -48.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483632315.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.645 kcal (2) G-P(sol) polarization free energy of solvation -37.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds