Wall clock time and date at job start Sat Apr 11 2020 06:21:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86799 * 120.00028 * 2 1 4 4 H 1.48497 * 109.47241 * 270.00211 * 3 2 1 5 5 H 1.48499 * 109.47065 * 30.00197 * 3 2 1 6 6 H 1.48503 * 109.46841 * 150.00046 * 3 2 1 7 7 C 1.38800 * 119.99835 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00145 * 0.02562 * 7 2 1 9 9 S 1.76204 * 119.99890 * 179.97438 * 7 2 1 10 10 C 1.80996 * 99.99942 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.46962 * 180.02562 * 10 9 7 12 12 O 1.21277 * 120.00295 * 0.02562 * 11 10 9 13 13 N 1.34778 * 119.99754 * 179.97438 * 11 10 9 14 14 C 1.46508 * 119.99763 * 179.97438 * 13 11 10 15 15 C 1.53000 * 109.46724 * 180.02562 * 14 13 11 16 16 H 1.08998 * 112.78835 * 284.18619 * 15 14 13 17 17 C 1.53515 * 113.47330 * 153.38088 * 15 14 13 18 18 C 1.53507 * 83.57422 * 219.20770 * 17 15 14 19 19 N 1.47477 * 87.93471 * 26.02448 * 18 17 15 20 20 C 1.46898 * 111.00054 * 221.29386 * 19 18 17 21 21 C 1.52995 * 109.47292 * 295.18475 * 20 19 18 22 22 N 1.46492 * 109.47296 * 185.02000 * 21 20 19 23 23 C 1.34781 * 120.00117 * 180.02562 * 22 21 20 24 24 O 1.21280 * 119.99932 * 359.97438 * 23 22 21 25 25 C 1.50704 * 120.00073 * 180.02562 * 23 22 21 26 26 C 1.52994 * 117.49885 * 248.62234 * 25 23 22 27 27 C 1.52999 * 117.49972 * 179.97438 * 25 23 22 28 28 H 0.97000 * 119.99669 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.47172 * 60.00278 * 10 9 7 30 30 H 1.09000 * 109.47663 * 300.00322 * 10 9 7 31 31 H 0.96996 * 120.00563 * 0.02562 * 13 11 10 32 32 H 1.09004 * 109.46635 * 60.00522 * 14 13 11 33 33 H 1.08997 * 109.47279 * 300.00157 * 14 13 11 34 34 H 1.08999 * 114.17024 * 105.55901 * 17 15 14 35 35 H 1.08999 * 114.17374 * 332.85784 * 17 15 14 36 36 H 1.09000 * 113.48100 * 271.25314 * 18 17 15 37 37 H 1.09003 * 113.47567 * 140.79639 * 18 17 15 38 38 H 1.08999 * 109.47063 * 175.18805 * 20 19 18 39 39 H 1.08996 * 109.47140 * 55.18546 * 20 19 18 40 40 H 1.09004 * 109.47309 * 305.02025 * 21 20 19 41 41 H 1.09000 * 109.47211 * 65.01612 * 21 20 19 42 42 H 0.97000 * 120.00073 * 359.97438 * 22 21 20 43 43 H 1.09000 * 115.54949 * 34.32884 * 25 23 22 44 44 H 1.09004 * 117.49927 * 359.97438 * 26 25 23 45 45 H 1.09003 * 117.50238 * 145.01934 * 26 25 23 46 46 H 1.09004 * 117.49919 * 214.97796 * 27 25 23 47 47 H 1.09001 * 117.49685 * 0.02562 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4401 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0014 9 16 3.7724 -1.2021 -0.0012 10 6 4.0866 -2.9845 -0.0025 11 6 5.5731 -3.2325 -0.0026 12 8 6.3441 -2.2964 -0.0014 13 7 6.0457 -4.4947 -0.0030 14 6 7.4908 -4.7358 -0.0037 15 6 7.7564 -6.2426 -0.0047 16 1 7.5875 -6.7017 0.9693 17 6 9.1020 -6.6259 -0.6363 18 6 8.2994 -7.7984 -1.2172 19 7 7.0939 -6.9552 -1.1130 20 6 5.9471 -7.7341 -0.6272 21 6 5.5856 -8.8062 -1.6571 22 7 4.3704 -9.5039 -1.2299 23 6 3.8616 -10.4962 -1.9869 24 8 4.4094 -10.8111 -3.0220 25 6 2.6111 -11.2135 -1.5476 26 6 2.7496 -12.6750 -1.1167 27 6 2.0831 -12.3301 -2.4505 28 1 -0.4850 0.8401 -0.0004 29 1 3.6434 -3.4310 -0.8927 30 1 3.6440 -3.4323 0.8873 31 1 5.4291 -5.2435 -0.0036 32 1 7.9340 -4.2889 0.8862 33 1 7.9333 -4.2886 -0.8938 34 1 9.8652 -6.9208 0.0838 35 1 9.4623 -5.9182 -1.3830 36 1 8.2754 -8.6728 -0.5669 37 1 8.5704 -8.0436 -2.2442 38 1 5.0947 -7.0714 -0.4782 39 1 6.2060 -8.2111 0.3181 40 1 5.4133 -8.3363 -2.6255 41 1 6.4045 -9.5207 -1.7406 42 1 3.9325 -9.2523 -0.4018 43 1 1.8775 -10.6012 -1.0233 44 1 3.7450 -13.1178 -1.1513 45 1 2.1070 -13.0245 -0.3085 46 1 1.0022 -12.4528 -2.5196 47 1 2.6404 -12.5461 -3.3621 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483632317.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:46 Heat of formation + Delta-G solvation = -12.620897 kcal Electronic energy + Delta-G solvation = -26434.367920 eV Core-core repulsion = 22552.352244 eV Total energy + Delta-G solvation = -3882.015676 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.03107 -40.20604 -38.98619 -36.78036 -35.47586 -34.37689 -32.43844 -31.94940 -30.13291 -27.67710 -27.59684 -25.60833 -24.48148 -23.57084 -22.87271 -22.14073 -20.57162 -20.52164 -20.08600 -17.94277 -17.94015 -16.89472 -16.66289 -16.32388 -15.98466 -15.93511 -15.48489 -15.20531 -14.98960 -14.83374 -14.70694 -14.26717 -14.11804 -13.81535 -13.39821 -13.11845 -12.95948 -12.79792 -12.64507 -12.43871 -12.01139 -11.92505 -11.88006 -11.78563 -11.35863 -11.26930 -11.07994 -11.00597 -10.99512 -10.93217 -10.58428 -10.24848 -9.85717 -9.55496 -9.51439 -9.35475 -9.01140 -8.92125 -8.49686 -6.91392 -6.29096 -4.00560 2.10951 2.58191 2.76792 3.00538 3.26198 3.33899 3.41127 3.50548 3.52413 3.70612 3.96047 4.20608 4.28223 4.30805 4.33370 4.36991 4.43275 4.52852 4.69593 4.72232 4.75679 4.80404 4.86247 4.92046 5.10066 5.13778 5.19727 5.25774 5.31151 5.33569 5.38224 5.44606 5.48695 5.56902 5.67788 5.68629 5.75253 5.79433 5.82340 5.97313 6.00723 6.53016 6.56002 7.04905 7.62202 7.82534 7.94045 8.41146 8.51405 9.17244 10.80163 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009169 B = 0.002352 C = 0.001911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3052.880635 B =11899.948444 C =14651.778819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.095 3.905 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.521 4.521 8 H 0.088 0.912 9 S -0.141 6.141 10 C -0.124 4.124 11 C 0.530 3.470 12 O -0.520 6.520 13 N -0.731 5.731 14 C 0.140 3.860 15 C 0.015 3.985 16 H 0.086 0.914 17 C -0.134 4.134 18 C -0.006 4.006 19 N -0.457 5.457 20 C 0.005 3.995 21 C 0.123 3.877 22 N -0.727 5.727 23 C 0.544 3.456 24 O -0.539 6.539 25 C -0.197 4.197 26 C -0.153 4.153 27 C -0.147 4.147 28 H 0.271 0.729 29 H 0.096 0.904 30 H 0.095 0.905 31 H 0.395 0.605 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.081 0.919 35 H 0.100 0.900 36 H 0.071 0.929 37 H 0.090 0.910 38 H 0.085 0.915 39 H 0.051 0.949 40 H 0.080 0.920 41 H 0.067 0.933 42 H 0.403 0.597 43 H 0.126 0.874 44 H 0.098 0.902 45 H 0.105 0.895 46 H 0.105 0.895 47 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.763 -26.192 1.427 29.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.113 4.113 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.159 1.159 7 C -0.668 4.668 8 H 0.106 0.894 9 S 0.085 5.915 10 C -0.274 4.274 11 C 0.316 3.684 12 O -0.395 6.395 13 N -0.385 5.385 14 C 0.015 3.985 15 C -0.094 4.094 16 H 0.104 0.896 17 C -0.172 4.172 18 C -0.134 4.134 19 N -0.180 5.180 20 C -0.124 4.124 21 C -0.001 4.001 22 N -0.379 5.379 23 C 0.331 3.669 24 O -0.416 6.416 25 C -0.218 4.218 26 C -0.191 4.191 27 C -0.184 4.184 28 H 0.081 0.919 29 H 0.114 0.886 30 H 0.113 0.887 31 H 0.229 0.771 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.099 0.901 35 H 0.119 0.881 36 H 0.089 0.911 37 H 0.109 0.891 38 H 0.104 0.896 39 H 0.069 0.931 40 H 0.098 0.902 41 H 0.086 0.914 42 H 0.237 0.763 43 H 0.144 0.856 44 H 0.117 0.883 45 H 0.124 0.876 46 H 0.123 0.877 47 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 14.005 -24.380 0.094 28.116 hybrid contribution -1.294 -0.987 1.188 2.015 sum 12.711 -25.366 1.282 28.402 Atomic orbital electron populations 1.69941 1.05920 1.27764 1.48137 1.24718 0.94458 0.98987 0.93183 0.86728 0.81879 0.83243 0.79968 1.19183 1.19957 1.15917 1.22317 0.88309 0.97501 1.58721 0.89440 1.84791 1.09205 1.00063 1.97407 1.23270 0.94152 1.04385 1.05626 1.20258 0.90542 0.82315 0.75301 1.90697 1.58759 1.42189 1.47873 1.45869 1.07346 1.07825 1.77472 1.21251 0.81917 0.92676 1.02634 1.23786 0.95174 0.95692 0.94786 0.89598 1.23188 0.95298 0.98232 1.00516 1.23768 0.91115 0.95791 1.02761 1.69033 1.01710 1.16538 1.30761 1.22918 0.96840 0.95966 0.96679 1.21230 0.86745 0.93543 0.98581 1.45822 1.28781 1.36905 1.26372 1.19675 0.84629 0.79298 0.83330 1.90713 1.61463 1.65409 1.23997 1.22210 0.98693 0.92726 1.08192 1.22955 1.03144 0.93775 0.99186 1.22978 1.01198 0.98991 0.95267 0.91947 0.88585 0.88676 0.77081 0.91135 0.90834 0.90056 0.88149 0.91118 0.89111 0.89640 0.93053 0.90208 0.91430 0.76296 0.85578 0.88324 0.87647 0.87712 0.87369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.62 13.97 55.49 0.78 -25.84 16 2 C 0.10 2.79 5.50 -17.43 -0.10 2.69 16 3 Si 0.86 21.86 27.74 -169.99 -4.71 17.15 16 4 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.24 -5.98 6.74 56.52 0.38 -5.60 16 7 C -0.52 -15.02 10.04 30.94 0.31 -14.71 16 8 H 0.09 2.62 8.03 -52.49 -0.42 2.20 16 9 S -0.14 -3.59 18.55 -107.50 -1.99 -5.59 16 10 C -0.12 -2.40 6.16 36.01 0.22 -2.18 16 11 C 0.53 9.46 7.85 -10.99 -0.09 9.37 16 12 O -0.52 -11.29 15.86 5.56 0.09 -11.20 16 13 N -0.73 -9.28 5.46 -60.29 -0.33 -9.61 16 14 C 0.14 1.49 5.82 -4.04 -0.02 1.47 16 15 C 0.02 0.11 3.25 -71.44 -0.23 -0.12 16 16 H 0.09 0.52 7.62 -51.93 -0.40 0.12 16 17 C -0.13 -0.78 8.00 -26.20 -0.21 -0.99 16 18 C -0.01 -0.03 6.64 -7.56 -0.05 -0.08 16 19 N -0.46 -3.52 6.05 -236.52 -1.43 -4.95 16 20 C 0.01 0.03 4.72 -3.83 -0.02 0.01 16 21 C 0.12 0.96 5.57 -4.05 -0.02 0.94 16 22 N -0.73 -5.25 5.56 -60.30 -0.33 -5.58 16 23 C 0.54 5.21 7.61 -10.98 -0.08 5.12 16 24 O -0.54 -7.35 16.26 5.56 0.09 -7.26 16 25 C -0.20 -1.34 6.19 -91.77 -0.57 -1.91 16 26 C -0.15 -0.85 10.24 -26.71 -0.27 -1.12 16 27 C -0.15 -0.98 10.05 -26.71 -0.27 -1.25 16 28 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 29 H 0.10 1.76 8.14 -51.92 -0.42 1.34 16 30 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 31 H 0.39 4.09 6.34 -40.82 -0.26 3.83 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.07 0.89 7.87 -51.93 -0.41 0.48 16 34 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 35 H 0.10 0.65 7.94 -51.93 -0.41 0.23 16 36 H 0.07 0.35 7.83 -51.93 -0.41 -0.06 16 37 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.09 0.56 6.59 -51.93 -0.34 0.22 16 39 H 0.05 0.26 7.56 -51.93 -0.39 -0.13 16 40 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 41 H 0.07 0.55 7.49 -51.93 -0.39 0.16 16 42 H 0.40 1.85 8.47 -40.82 -0.35 1.51 16 43 H 0.13 0.63 8.14 -51.93 -0.42 0.20 16 44 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 45 H 0.11 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.11 0.89 7.67 -51.93 -0.40 0.49 16 LS Contribution 401.15 15.07 6.05 6.05 Total: -1.00 -36.92 401.15 -10.76 -47.68 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -7.55 Total: 1.91 kcal Atomic # 6 Polarization: -1.36 SS G_CDS: -1.40 Total: -2.76 kcal Atomic # 7 Polarization: -44.67 SS G_CDS: -1.32 Total: -45.99 kcal Atomic # 8 Polarization: -18.64 SS G_CDS: 0.18 Total: -18.46 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.71 Total: 17.15 kcal Atomic # 16 Polarization: -3.59 SS G_CDS: -1.99 Total: -5.59 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -36.92 -10.76 -47.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483632317.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.059 kcal (2) G-P(sol) polarization free energy of solvation -36.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds