Wall clock time and date at job start Sat Apr 11 2020 06:21:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86799 * 120.00028 * 2 1 4 4 H 1.48497 * 109.47241 * 270.00211 * 3 2 1 5 5 H 1.48499 * 109.47065 * 30.00197 * 3 2 1 6 6 H 1.48503 * 109.46841 * 150.00046 * 3 2 1 7 7 C 1.38800 * 119.99835 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00145 * 0.02562 * 7 2 1 9 9 S 1.76204 * 119.99890 * 179.97438 * 7 2 1 10 10 C 1.80996 * 99.99942 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.46962 * 180.02562 * 10 9 7 12 12 O 1.21277 * 120.00295 * 0.02562 * 11 10 9 13 13 N 1.34778 * 119.99754 * 179.97438 * 11 10 9 14 14 C 1.46508 * 119.99763 * 179.97438 * 13 11 10 15 15 C 1.53000 * 109.46724 * 180.02562 * 14 13 11 16 16 H 1.08998 * 112.78835 * 284.18619 * 15 14 13 17 17 C 1.53515 * 113.47330 * 153.38088 * 15 14 13 18 18 C 1.53507 * 83.57422 * 219.20770 * 17 15 14 19 19 N 1.47477 * 87.93471 * 26.02448 * 18 17 15 20 20 C 1.46898 * 111.00054 * 221.29386 * 19 18 17 21 21 C 1.52995 * 109.47292 * 295.18475 * 20 19 18 22 22 N 1.46492 * 109.47296 * 185.02000 * 21 20 19 23 23 C 1.34781 * 120.00117 * 180.02562 * 22 21 20 24 24 O 1.21280 * 119.99932 * 359.97438 * 23 22 21 25 25 C 1.50704 * 120.00073 * 180.02562 * 23 22 21 26 26 C 1.52994 * 117.49885 * 248.62234 * 25 23 22 27 27 C 1.52999 * 117.49972 * 179.97438 * 25 23 22 28 28 H 0.97000 * 119.99669 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.47172 * 60.00278 * 10 9 7 30 30 H 1.09000 * 109.47663 * 300.00322 * 10 9 7 31 31 H 0.96996 * 120.00563 * 0.02562 * 13 11 10 32 32 H 1.09004 * 109.46635 * 60.00522 * 14 13 11 33 33 H 1.08997 * 109.47279 * 300.00157 * 14 13 11 34 34 H 1.08999 * 114.17024 * 105.55901 * 17 15 14 35 35 H 1.08999 * 114.17374 * 332.85784 * 17 15 14 36 36 H 1.09000 * 113.48100 * 271.25314 * 18 17 15 37 37 H 1.09003 * 113.47567 * 140.79639 * 18 17 15 38 38 H 1.08999 * 109.47063 * 175.18805 * 20 19 18 39 39 H 1.08996 * 109.47140 * 55.18546 * 20 19 18 40 40 H 1.09004 * 109.47309 * 305.02025 * 21 20 19 41 41 H 1.09000 * 109.47211 * 65.01612 * 21 20 19 42 42 H 0.97000 * 120.00073 * 359.97438 * 22 21 20 43 43 H 1.09000 * 115.54949 * 34.32884 * 25 23 22 44 44 H 1.09004 * 117.49927 * 359.97438 * 26 25 23 45 45 H 1.09003 * 117.50238 * 145.01934 * 26 25 23 46 46 H 1.09004 * 117.49919 * 214.97796 * 27 25 23 47 47 H 1.09001 * 117.49685 * 0.02562 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4401 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0014 9 16 3.7724 -1.2021 -0.0012 10 6 4.0866 -2.9845 -0.0025 11 6 5.5731 -3.2325 -0.0026 12 8 6.3441 -2.2964 -0.0014 13 7 6.0457 -4.4947 -0.0030 14 6 7.4908 -4.7358 -0.0037 15 6 7.7564 -6.2426 -0.0047 16 1 7.5875 -6.7017 0.9693 17 6 9.1020 -6.6259 -0.6363 18 6 8.2994 -7.7984 -1.2172 19 7 7.0939 -6.9552 -1.1130 20 6 5.9471 -7.7341 -0.6272 21 6 5.5856 -8.8062 -1.6571 22 7 4.3704 -9.5039 -1.2299 23 6 3.8616 -10.4962 -1.9869 24 8 4.4094 -10.8111 -3.0220 25 6 2.6111 -11.2135 -1.5476 26 6 2.7496 -12.6750 -1.1167 27 6 2.0831 -12.3301 -2.4505 28 1 -0.4850 0.8401 -0.0004 29 1 3.6434 -3.4310 -0.8927 30 1 3.6440 -3.4323 0.8873 31 1 5.4291 -5.2435 -0.0036 32 1 7.9340 -4.2889 0.8862 33 1 7.9333 -4.2886 -0.8938 34 1 9.8652 -6.9208 0.0838 35 1 9.4623 -5.9182 -1.3830 36 1 8.2754 -8.6728 -0.5669 37 1 8.5704 -8.0436 -2.2442 38 1 5.0947 -7.0714 -0.4782 39 1 6.2060 -8.2111 0.3181 40 1 5.4133 -8.3363 -2.6255 41 1 6.4045 -9.5207 -1.7406 42 1 3.9325 -9.2523 -0.4018 43 1 1.8775 -10.6012 -1.0233 44 1 3.7450 -13.1178 -1.1513 45 1 2.1070 -13.0245 -0.3085 46 1 1.0022 -12.4528 -2.5196 47 1 2.6404 -12.5461 -3.3621 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483632317.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:45 Heat of formation + Delta-G solvation = -42.332119 kcal Electronic energy + Delta-G solvation = -26435.656295 eV Core-core repulsion = 22552.352244 eV Total energy + Delta-G solvation = -3883.304052 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.66595 -40.93312 -40.29672 -37.31873 -36.22930 -35.55616 -34.67267 -32.60275 -31.45396 -28.70288 -28.19497 -27.82113 -25.04144 -24.27363 -23.33351 -22.77997 -21.81525 -21.19501 -20.72817 -19.88297 -18.55126 -17.99443 -17.55797 -17.41303 -17.08937 -16.76208 -16.69859 -16.41900 -16.08259 -15.76800 -15.58876 -15.28069 -14.99848 -14.91675 -14.82700 -14.60786 -14.10209 -13.58380 -13.52195 -13.35187 -13.23385 -13.03075 -12.88409 -12.70093 -12.47792 -12.42625 -12.35894 -11.89852 -11.87736 -11.59024 -11.57587 -11.46408 -11.17467 -11.01002 -10.96044 -10.53922 -10.21772 -10.10708 -9.90115 -8.99910 -8.51950 -6.22571 0.98660 1.31509 1.41258 1.46672 1.55484 1.57879 1.98053 2.21895 2.26222 2.70797 2.86401 2.89072 3.00140 3.42412 3.66164 3.73856 3.75695 3.84862 3.86296 3.96016 4.03071 4.09944 4.20859 4.22206 4.29362 4.33808 4.41057 4.44656 4.53762 4.72227 4.74825 4.78379 4.82998 4.88823 4.94022 5.00852 5.01458 5.19134 5.20036 5.24008 5.33791 5.45314 5.70482 6.02278 6.10980 6.44663 6.45942 6.93404 7.16304 7.19236 8.60438 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009169 B = 0.002352 C = 0.001911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3052.880635 B =11899.948444 C =14651.778819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.045 3.955 3 Si 0.914 3.086 4 H -0.264 1.264 5 H -0.258 1.258 6 H -0.236 1.236 7 C -0.528 4.528 8 H 0.063 0.937 9 S -0.175 6.175 10 C -0.111 4.111 11 C 0.533 3.467 12 O -0.564 6.564 13 N -0.706 5.706 14 C 0.137 3.863 15 C 0.024 3.976 16 H 0.109 0.891 17 C -0.127 4.127 18 C -0.002 4.002 19 N -0.483 5.483 20 C 0.011 3.989 21 C 0.128 3.872 22 N -0.713 5.713 23 C 0.536 3.464 24 O -0.589 6.589 25 C -0.202 4.202 26 C -0.137 4.137 27 C -0.159 4.159 28 H 0.277 0.723 29 H 0.108 0.892 30 H 0.115 0.885 31 H 0.409 0.591 32 H 0.072 0.928 33 H 0.057 0.943 34 H 0.102 0.898 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.075 0.925 40 H 0.051 0.949 41 H 0.064 0.936 42 H 0.418 0.582 43 H 0.150 0.850 44 H 0.090 0.910 45 H 0.132 0.868 46 H 0.123 0.877 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.607 -27.439 3.099 30.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.160 4.160 3 Si 0.736 3.264 4 H -0.188 1.188 5 H -0.183 1.183 6 H -0.160 1.160 7 C -0.675 4.675 8 H 0.081 0.919 9 S 0.051 5.949 10 C -0.262 4.262 11 C 0.318 3.682 12 O -0.442 6.442 13 N -0.359 5.359 14 C 0.013 3.987 15 C -0.086 4.086 16 H 0.127 0.873 17 C -0.165 4.165 18 C -0.131 4.131 19 N -0.207 5.207 20 C -0.117 4.117 21 C 0.004 3.996 22 N -0.366 5.366 23 C 0.324 3.676 24 O -0.470 6.470 25 C -0.223 4.223 26 C -0.174 4.174 27 C -0.197 4.197 28 H 0.086 0.914 29 H 0.127 0.873 30 H 0.133 0.867 31 H 0.246 0.754 32 H 0.090 0.910 33 H 0.076 0.924 34 H 0.121 0.879 35 H 0.109 0.891 36 H 0.106 0.894 37 H 0.101 0.899 38 H 0.104 0.896 39 H 0.093 0.907 40 H 0.069 0.931 41 H 0.082 0.918 42 H 0.255 0.745 43 H 0.168 0.832 44 H 0.108 0.892 45 H 0.150 0.850 46 H 0.141 0.859 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 14.837 -25.669 1.802 29.703 hybrid contribution -1.520 -0.774 0.631 1.819 sum 13.317 -26.443 2.433 29.707 Atomic orbital electron populations 1.70016 1.07278 1.29022 1.49192 1.25564 0.95283 1.02258 0.92921 0.85871 0.80721 0.79635 0.80175 1.18842 1.18262 1.16004 1.22455 0.90218 0.96679 1.58180 0.91920 1.84724 1.06445 1.06156 1.97566 1.23261 0.96025 0.99656 1.07234 1.19955 0.89367 0.83455 0.75394 1.90686 1.59302 1.43819 1.50441 1.45678 1.08843 1.06417 1.74982 1.21437 0.79937 0.95398 1.01937 1.23786 0.95956 0.93013 0.95821 0.87317 1.23171 0.95158 0.97682 1.00519 1.23783 0.90224 0.96220 1.02853 1.69011 1.02680 1.17640 1.31335 1.22880 0.96536 0.95402 0.96921 1.21104 0.86817 0.93754 0.97933 1.45745 1.28396 1.35913 1.26517 1.20253 0.85192 0.79429 0.82761 1.90688 1.63106 1.67009 1.26210 1.22300 0.97857 0.93391 1.08745 1.23042 1.03027 0.92342 0.99022 1.23022 1.02085 0.99562 0.94995 0.91362 0.87347 0.86687 0.75384 0.91017 0.92438 0.87930 0.89142 0.89430 0.89853 0.89620 0.90651 0.93065 0.91804 0.74487 0.83233 0.89159 0.85032 0.85865 0.89753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.80 13.97 21.65 0.30 -55.49 16 2 C 0.05 2.65 5.50 84.86 0.47 3.11 16 3 Si 0.91 45.08 27.74 68.60 1.90 46.99 16 4 H -0.26 -12.76 7.11 99.48 0.71 -12.05 16 5 H -0.26 -11.91 7.11 99.48 0.71 -11.21 16 6 H -0.24 -11.61 6.74 99.48 0.67 -10.94 16 7 C -0.53 -30.67 10.04 67.95 0.68 -29.99 16 8 H 0.06 3.83 8.03 -2.91 -0.02 3.80 16 9 S -0.18 -8.88 18.55 -56.49 -1.05 -9.93 16 10 C -0.11 -4.16 6.16 71.24 0.44 -3.72 16 11 C 0.53 18.29 7.85 87.66 0.69 18.97 16 12 O -0.56 -24.15 15.86 -3.02 -0.05 -24.20 16 13 N -0.71 -16.42 5.46 -463.04 -2.53 -18.95 16 14 C 0.14 2.66 5.82 86.38 0.50 3.16 16 15 C 0.02 0.27 3.25 42.18 0.14 0.41 16 16 H 0.11 0.82 7.62 -2.39 -0.02 0.80 16 17 C -0.13 -1.16 8.00 30.94 0.25 -0.91 16 18 C 0.00 -0.02 6.64 83.57 0.56 0.53 16 19 N -0.48 -6.39 6.05 -902.22 -5.46 -11.85 16 20 C 0.01 0.12 4.72 86.30 0.41 0.53 16 21 C 0.13 1.88 5.57 86.38 0.48 2.37 16 22 N -0.71 -9.37 5.56 -463.07 -2.57 -11.94 16 23 C 0.54 10.06 7.61 87.66 0.67 10.73 16 24 O -0.59 -16.68 16.26 -3.03 -0.05 -16.73 16 25 C -0.20 -2.46 6.19 -11.54 -0.07 -2.53 16 26 C -0.14 -1.27 10.24 30.61 0.31 -0.96 16 27 C -0.16 -2.01 10.05 30.61 0.31 -1.70 16 28 H 0.28 15.57 8.31 -92.71 -0.77 14.80 16 29 H 0.11 3.82 8.14 -2.39 -0.02 3.80 16 30 H 0.11 3.87 8.14 -2.40 -0.02 3.85 16 31 H 0.41 7.30 6.34 -92.71 -0.59 6.71 16 32 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.06 1.34 7.87 -2.39 -0.02 1.32 16 34 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.09 1.03 7.94 -2.39 -0.02 1.01 16 36 H 0.09 0.58 7.83 -2.39 -0.02 0.56 16 37 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.09 0.88 6.59 -2.39 -0.02 0.86 16 39 H 0.08 0.45 7.56 -2.39 -0.02 0.43 16 40 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.06 1.00 7.49 -2.39 -0.02 0.98 16 42 H 0.42 2.84 8.47 -92.71 -0.79 2.05 16 43 H 0.15 1.08 8.14 -2.39 -0.02 1.07 16 44 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 45 H 0.13 0.55 8.14 -2.39 -0.02 0.53 16 46 H 0.12 1.04 8.14 -2.38 -0.02 1.03 16 47 H 0.08 1.48 7.67 -2.39 -0.02 1.46 16 Total: -1.00 -82.27 401.15 -4.10 -86.37 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: -0.42 Total: 15.75 kcal Atomic # 6 Polarization: -5.83 SS G_CDS: 5.82 Total: 0.00 kcal Atomic # 7 Polarization: -87.98 SS G_CDS: -10.26 Total: -98.24 kcal Atomic # 8 Polarization: -40.83 SS G_CDS: -0.10 Total: -40.93 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 1.90 Total: 46.99 kcal Atomic # 16 Polarization: -8.88 SS G_CDS: -1.05 Total: -9.93 kcal Total: -82.27 -4.10 -86.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483632317.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.038 kcal (2) G-P(sol) polarization free energy of solvation -82.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds