Wall clock time and date at job start Sat Apr 11 2020 06:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86792 * 120.00090 * 2 1 4 4 H 1.48500 * 109.47644 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.47491 * 120.00051 * 3 2 1 6 6 H 1.48507 * 109.46930 * 239.99672 * 3 2 1 7 7 C 1.38813 * 119.99591 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99733 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00170 * 359.97438 * 7 2 1 10 10 C 1.46499 * 119.99954 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46946 * 187.35156 * 10 9 7 12 12 H 1.09003 * 109.87252 * 314.99979 * 11 10 9 13 13 C 1.54324 * 109.87762 * 193.98527 * 11 10 9 14 14 C 1.55164 * 102.94097 * 218.38675 * 13 11 10 15 15 C 1.54908 * 101.57736 * 35.50609 * 14 13 11 16 16 N 1.47015 * 109.88390 * 76.17949 * 11 10 9 17 17 C 1.34776 * 125.64643 * 298.33620 * 16 11 10 18 18 O 1.21603 * 120.00121 * 1.03631 * 17 16 11 19 19 C 1.47423 * 119.99960 * 181.03821 * 17 16 11 20 20 C 1.41367 * 126.40867 * 351.50884 * 19 17 16 21 21 N 1.30454 * 108.07703 * 179.97438 * 20 19 17 22 22 N 1.39936 * 108.91436 * 0.02562 * 21 20 19 23 23 C 1.39916 * 125.77549 * 180.02562 * 22 21 20 24 24 C 1.39324 * 120.85858 * 179.69014 * 23 22 21 25 25 C 1.38001 * 119.08108 * 179.75469 * 24 23 22 26 26 N 1.31945 * 120.83313 * 0.53616 * 25 24 23 27 27 C 1.31939 * 121.88049 * 359.73660 * 26 25 24 28 28 C 1.38002 * 120.83714 * 359.97438 * 27 26 25 29 29 C 1.34605 * 108.45001 * 359.74722 * 22 21 20 30 30 H 0.96998 * 120.00495 * 180.02562 * 1 2 3 31 31 H 0.97002 * 120.00188 * 0.02562 * 9 7 2 32 32 H 1.08999 * 109.46959 * 307.34937 * 10 9 7 33 33 H 1.09001 * 109.47412 * 67.34761 * 10 9 7 34 34 H 1.08999 * 110.72818 * 336.75079 * 13 11 10 35 35 H 1.09000 * 110.71836 * 99.85446 * 13 11 10 36 36 H 1.08995 * 111.00179 * 153.57855 * 14 13 11 37 37 H 1.08999 * 111.00485 * 277.39172 * 14 13 11 38 38 H 1.08993 * 110.37004 * 81.82859 * 15 14 13 39 39 H 1.09010 * 110.36381 * 204.04318 * 15 14 13 40 40 H 1.07998 * 125.95926 * 359.96089 * 20 19 17 41 41 H 1.08002 * 120.45687 * 0.02703 * 24 23 22 42 42 H 1.08001 * 119.58474 * 180.29946 * 25 24 23 43 43 H 1.08001 * 119.57942 * 179.97438 * 27 26 25 44 44 H 1.07997 * 120.46332 * 180.02562 * 28 27 26 45 45 H 1.07999 * 126.31493 * 180.26309 * 29 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 1.2853 2.7465 -0.0006 5 1 3.1040 1.6964 1.2125 6 1 3.1040 1.6962 -1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0901 -1.2022 0.0010 9 7 1.3254 -2.3881 0.0016 10 6 2.0579 -3.6568 0.0027 11 6 1.0738 -4.8140 -0.1808 12 1 0.2060 -4.6679 0.4623 13 6 1.7645 -6.1500 0.1650 14 6 1.1904 -7.1233 -0.8983 15 6 1.0668 -6.1967 -2.1335 16 7 0.6508 -4.8924 -1.5866 17 6 -0.0086 -3.9311 -2.2632 18 8 -0.2860 -2.8823 -1.7140 19 6 -0.3935 -4.1513 -3.6691 20 6 -0.0001 -5.2352 -4.4869 21 7 -0.5448 -5.0748 -5.6614 22 7 -1.3017 -3.8978 -5.6534 23 6 -2.0351 -3.3896 -6.7311 24 6 -2.7604 -2.2065 -6.6074 25 6 -3.4668 -1.7359 -7.6955 26 7 -3.4691 -2.3967 -8.8376 27 6 -2.7995 -3.5229 -8.9923 28 6 -2.0635 -4.0567 -7.9540 29 6 -1.2097 -3.3404 -4.4316 30 1 -0.4851 -0.8400 0.0004 31 1 0.3554 -2.3881 0.0016 32 1 2.7795 -3.6605 -0.8142 33 1 2.5823 -3.7728 0.9512 34 1 2.8462 -6.0626 0.0637 35 1 1.4975 -6.4730 1.1713 36 1 1.8827 -7.9425 -1.0923 37 1 0.2148 -7.5027 -0.5945 38 1 2.0286 -6.1070 -2.6383 39 1 0.3125 -6.5796 -2.8210 40 1 0.6398 -6.0533 -4.1910 41 1 -2.7662 -1.6629 -5.6742 42 1 -4.0279 -0.8170 -7.6101 43 1 -2.8276 -4.0336 -9.9435 44 1 -1.5173 -4.9788 -8.0875 45 1 -1.6852 -2.4263 -4.1082 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483951119.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:49 Heat of formation + Delta-G solvation = 133.524110 kcal Electronic energy + Delta-G solvation = -29395.037791 eV Core-core repulsion = 25416.208238 eV Total energy + Delta-G solvation = -3978.829553 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.99510 -40.30240 -39.56556 -36.98873 -34.85764 -34.34079 -31.86446 -31.77492 -31.23221 -30.66141 -29.88830 -28.53372 -25.09861 -24.80706 -24.11828 -23.24953 -22.30055 -21.67291 -21.14271 -20.51318 -19.29448 -18.35063 -17.10020 -16.68863 -16.44273 -16.25898 -15.93078 -15.73758 -15.51391 -15.10398 -14.44951 -14.17922 -14.12823 -13.99272 -13.78342 -13.51310 -13.46349 -13.22589 -12.97062 -12.73809 -12.54925 -12.17684 -11.96056 -11.56671 -11.27271 -11.24051 -11.06484 -10.85822 -10.64249 -10.55746 -10.34521 -9.99059 -9.83586 -9.63399 -9.52446 -9.26503 -8.87684 -8.69571 -8.62750 -8.20449 -6.62057 -5.79996 -2.74668 0.32251 0.69638 1.77112 1.87318 2.06856 3.21935 3.43778 3.62085 3.67095 3.73602 3.84048 3.98627 4.07363 4.33702 4.47130 4.52409 4.60975 4.64020 4.73770 4.86670 4.90015 4.95975 5.11691 5.14352 5.27486 5.29044 5.34923 5.38307 5.46136 5.54715 5.66279 5.69142 5.79972 5.86789 5.94290 6.01336 6.11518 6.14968 6.18074 6.40401 6.48225 6.66014 6.78601 6.95368 7.20994 7.56286 7.89168 8.04582 8.70822 9.12869 9.66643 10.49791 10.67757 11.71176 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009054 B = 0.003631 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3091.796995 B = 7709.924602 C =10402.445225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.044 4.044 3 Si 1.075 2.925 4 H -0.287 1.287 5 H -0.298 1.298 6 H -0.300 1.300 7 C -0.328 4.328 8 H 0.053 0.947 9 N -0.730 5.730 10 C 0.152 3.848 11 C 0.132 3.868 12 H 0.073 0.927 13 C -0.124 4.124 14 C -0.132 4.132 15 C 0.088 3.912 16 N -0.611 5.611 17 C 0.591 3.409 18 O -0.478 6.478 19 C -0.255 4.255 20 C 0.078 3.922 21 N -0.293 5.293 22 N -0.322 5.322 23 C 0.207 3.793 24 C -0.194 4.194 25 C 0.130 3.870 26 N -0.494 5.494 27 C 0.122 3.878 28 C -0.175 4.175 29 C 0.128 3.872 30 H 0.264 0.736 31 H 0.383 0.617 32 H 0.019 0.981 33 H 0.017 0.983 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.075 0.925 38 H 0.068 0.932 39 H 0.080 0.920 40 H 0.208 0.792 41 H 0.148 0.852 42 H 0.169 0.831 43 H 0.165 0.835 44 H 0.150 0.850 45 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.656 -16.525 -13.150 21.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.242 4.242 3 Si 0.907 3.093 4 H -0.212 1.212 5 H -0.226 1.226 6 H -0.228 1.228 7 C -0.459 4.459 8 H 0.071 0.929 9 N -0.382 5.382 10 C 0.023 3.977 11 C 0.029 3.971 12 H 0.091 0.909 13 C -0.163 4.163 14 C -0.170 4.170 15 C -0.036 4.036 16 N -0.347 5.347 17 C 0.378 3.622 18 O -0.349 6.349 19 C -0.269 4.269 20 C -0.111 4.111 21 N -0.110 5.110 22 N -0.096 5.096 23 C 0.106 3.894 24 C -0.217 4.217 25 C -0.027 4.027 26 N -0.204 5.204 27 C -0.035 4.035 28 C -0.197 4.197 29 C -0.017 4.017 30 H 0.075 0.925 31 H 0.223 0.777 32 H 0.037 0.963 33 H 0.035 0.965 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.100 0.900 37 H 0.093 0.907 38 H 0.086 0.914 39 H 0.097 0.903 40 H 0.224 0.776 41 H 0.166 0.834 42 H 0.186 0.814 43 H 0.182 0.818 44 H 0.167 0.833 45 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -4.461 -14.297 -14.813 21.065 hybrid contribution 0.855 -1.761 1.513 2.474 sum -3.606 -16.059 -13.300 21.161 Atomic orbital electron populations 1.70709 1.05888 1.29240 1.53111 1.25536 0.97219 1.00307 1.01151 0.83326 0.74170 0.76236 0.75524 1.21234 1.22620 1.22794 1.19938 0.91373 0.86403 1.48212 0.92882 1.42703 1.06025 0.99761 1.89682 1.20911 0.93135 0.86193 0.97501 1.21893 0.97875 0.95639 0.81742 0.90903 1.22633 1.00809 0.93507 0.99311 1.22772 1.01876 0.97349 0.95040 1.22655 0.99825 0.84094 0.96985 1.48155 1.58075 1.16118 1.12378 1.16759 0.78569 0.82903 0.83935 1.90907 1.52327 1.23654 1.68026 1.20452 1.09557 0.99609 0.97264 1.24997 0.97751 0.98464 0.89844 1.77204 1.11455 1.00303 1.22001 1.45551 1.36985 1.18673 1.08353 1.17838 0.91750 0.93362 0.86435 1.22040 1.00574 0.96176 1.02900 1.22709 0.94619 0.98540 0.86856 1.67727 1.19548 1.07969 1.25141 1.22740 0.91008 0.91385 0.98339 1.21933 1.03065 1.02741 0.91926 1.23123 0.96649 0.98512 0.83416 0.92466 0.77744 0.96320 0.96544 0.90312 0.90101 0.89987 0.90651 0.91388 0.90257 0.77606 0.83440 0.81436 0.81765 0.83273 0.78729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -31.18 13.70 55.49 0.76 -30.42 16 2 C -0.04 -1.36 5.50 -17.43 -0.10 -1.46 16 3 Si 1.07 27.74 29.92 -169.99 -5.09 22.65 16 4 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 5 H -0.30 -7.33 7.11 56.52 0.40 -6.93 16 6 H -0.30 -7.46 7.11 56.52 0.40 -7.06 16 7 C -0.33 -10.04 9.99 -15.06 -0.15 -10.19 16 8 H 0.05 1.61 7.83 -52.49 -0.41 1.19 16 9 N -0.73 -20.14 4.19 -59.91 -0.25 -20.39 16 10 C 0.15 3.29 5.61 -4.04 -0.02 3.27 16 11 C 0.13 2.20 3.06 -66.95 -0.20 1.99 16 12 H 0.07 1.33 8.10 -51.93 -0.42 0.91 16 13 C -0.12 -1.41 6.44 -24.89 -0.16 -1.57 16 14 C -0.13 -1.16 7.09 -24.58 -0.17 -1.33 16 15 C 0.09 0.92 5.25 -2.53 -0.01 0.91 16 16 N -0.61 -9.70 3.06 -164.27 -0.50 -10.21 16 17 C 0.59 11.20 7.64 -12.52 -0.10 11.10 16 18 O -0.48 -11.58 13.11 5.27 0.07 -11.51 16 19 C -0.26 -3.98 6.06 -105.05 -0.64 -4.62 16 20 C 0.08 0.98 10.28 -16.95 -0.17 0.81 16 21 N -0.29 -3.90 11.87 30.88 0.37 -3.53 16 22 N -0.32 -4.32 3.76 -10.03 -0.04 -4.36 16 23 C 0.21 2.43 6.73 -83.36 -0.56 1.86 16 24 C -0.19 -1.98 9.52 -39.26 -0.37 -2.36 16 25 C 0.13 1.21 11.17 -17.59 -0.20 1.01 16 26 N -0.49 -5.10 10.36 -13.32 -0.14 -5.23 16 27 C 0.12 1.09 11.17 -17.59 -0.20 0.89 16 28 C -0.17 -1.75 9.73 -39.26 -0.38 -2.13 16 29 C 0.13 1.88 10.65 -16.41 -0.17 1.71 16 30 H 0.26 8.79 6.65 -40.82 -0.27 8.52 16 31 H 0.38 11.04 3.98 -40.82 -0.16 10.88 16 32 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.02 0.36 8.08 -51.93 -0.42 -0.06 16 34 H 0.08 0.87 7.85 -51.93 -0.41 0.46 16 35 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.07 0.66 8.01 -51.93 -0.42 0.24 16 39 H 0.08 0.69 5.31 -51.92 -0.28 0.42 16 40 H 0.21 1.90 4.81 -52.49 -0.25 1.65 16 41 H 0.15 1.34 6.85 -52.49 -0.36 0.98 16 42 H 0.17 1.10 8.06 -52.49 -0.42 0.68 16 43 H 0.17 0.94 8.06 -52.49 -0.42 0.52 16 44 H 0.15 1.38 7.78 -52.49 -0.41 0.97 16 45 H 0.20 2.68 7.09 -52.49 -0.37 2.31 16 LS Contribution 368.21 15.07 5.55 5.55 Total: -1.00 -39.81 368.21 -8.39 -48.20 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: -5.51 Total: 9.36 kcal Atomic # 6 Polarization: 3.51 SS G_CDS: -3.61 Total: -0.11 kcal Atomic # 7 Polarization: -74.34 SS G_CDS: 0.20 Total: -74.14 kcal Atomic # 8 Polarization: -11.58 SS G_CDS: 0.07 Total: -11.51 kcal Atomic # 14 Polarization: 27.74 SS G_CDS: -5.09 Total: 22.65 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -39.81 -8.39 -48.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483951119.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.725 kcal (2) G-P(sol) polarization free energy of solvation -39.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 141.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds