Wall clock time and date at job start Sat Apr 11 2020 06:21:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86803 * 119.99916 * 2 1 4 4 H 1.48496 * 109.47211 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.46952 * 300.00101 * 3 2 1 6 6 H 1.48504 * 109.47115 * 59.99895 * 3 2 1 7 7 C 1.38811 * 120.00542 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00331 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99538 * 359.97438 * 7 2 1 10 10 C 1.46499 * 119.99926 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.47297 * 172.74230 * 10 9 7 12 12 H 1.08998 * 109.99113 * 46.69251 * 11 10 9 13 13 C 1.54317 * 109.88269 * 167.78694 * 11 10 9 14 14 C 1.55156 * 102.94237 * 141.61458 * 13 11 10 15 15 C 1.55132 * 101.48304 * 324.32929 * 14 13 11 16 16 N 1.47019 * 109.88219 * 285.59476 * 11 10 9 17 17 C 1.34781 * 125.64880 * 61.60467 * 16 11 10 18 18 O 1.21606 * 119.99678 * 358.69160 * 17 16 11 19 19 C 1.47415 * 120.00059 * 178.96068 * 17 16 11 20 20 C 1.41366 * 126.41008 * 8.29717 * 19 17 16 21 21 N 1.30448 * 108.07883 * 179.97438 * 20 19 17 22 22 N 1.39938 * 108.91497 * 0.02562 * 21 20 19 23 23 C 1.39909 * 125.77412 * 180.02562 * 22 21 20 24 24 C 1.39325 * 120.85805 * 179.69605 * 23 22 21 25 25 C 1.38008 * 119.08318 * 179.72708 * 24 23 22 26 26 N 1.31934 * 120.82988 * 0.55372 * 25 24 23 27 27 C 1.31941 * 121.89005 * 359.72142 * 26 25 24 28 28 C 1.38009 * 120.82869 * 359.97438 * 27 26 25 29 29 C 1.34605 * 108.44836 * 359.76571 * 22 21 20 30 30 H 0.97001 * 120.00174 * 0.02562 * 1 2 3 31 31 H 0.96997 * 120.00112 * 0.02562 * 9 7 2 32 32 H 1.09000 * 109.46815 * 52.74513 * 10 9 7 33 33 H 1.08999 * 109.47642 * 292.74549 * 10 9 7 34 34 H 1.09001 * 110.71994 * 259.97336 * 13 11 10 35 35 H 1.08996 * 110.72370 * 23.24742 * 13 11 10 36 36 H 1.08995 * 111.00850 * 82.57367 * 14 13 11 37 37 H 1.09001 * 111.00113 * 206.42335 * 14 13 11 38 38 H 1.09000 * 110.49808 * 278.45163 * 15 14 13 39 39 H 1.09000 * 110.33886 * 156.06047 * 15 14 13 40 40 H 1.08006 * 125.95765 * 359.96699 * 20 19 17 41 41 H 1.08005 * 120.45906 * 359.97438 * 24 23 22 42 42 H 1.07997 * 119.58526 * 180.29972 * 25 24 23 43 43 H 1.07997 * 119.59018 * 180.02562 * 27 26 25 44 44 H 1.07994 * 120.46169 * 180.02562 * 28 27 26 45 45 H 1.08000 * 126.31266 * 180.27028 * 29 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2126 6 1 1.8914 2.3965 1.2125 7 6 2.0104 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0017 11 6 1.0742 -4.8140 0.1808 12 1 0.2200 -4.6852 -0.4839 13 6 1.7776 -6.1537 -0.1221 14 6 1.1816 -7.1084 0.9459 15 6 1.0297 -6.1561 2.1611 16 7 0.6177 -4.8667 1.5773 17 6 -0.0603 -3.8947 2.2194 18 8 -0.3228 -2.8554 1.6450 19 6 -0.4783 -4.0890 3.6196 20 6 -0.1049 -5.1578 4.4661 21 7 -0.6760 -4.9752 5.6246 22 7 -1.4321 -3.7986 5.5772 23 6 -2.1888 -3.2697 6.6284 24 6 -2.9007 -2.0826 6.4698 25 6 -3.6397 -1.5969 7.5294 26 7 -3.6682 -2.2361 8.6832 27 6 -3.0033 -3.3596 8.8743 28 6 -2.2457 -3.9139 7.8626 29 6 -1.3036 -3.2588 4.3508 30 1 -0.4850 0.8400 -0.0004 31 1 0.3557 -2.3880 -0.0005 32 1 2.7793 -3.6606 0.8158 33 1 2.5833 -3.7723 -0.9498 34 1 1.5337 -6.4988 -1.1268 35 1 2.8562 -6.0600 0.0034 36 1 0.2146 -7.4971 0.6266 37 1 1.8720 -7.9209 1.1724 38 1 1.9804 -6.0495 2.6836 39 1 0.2623 -6.5277 2.8401 40 1 0.5406 -5.9819 4.2000 41 1 -2.8777 -1.5519 5.5295 42 1 -4.1985 -0.6800 7.4138 43 1 -3.0533 -3.8522 9.8341 44 1 -1.7043 -4.8340 8.0254 45 1 -1.7626 -2.3453 4.0028 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483951120.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:51 Heat of formation + Delta-G solvation = 137.887637 kcal Electronic energy + Delta-G solvation = -29370.479161 eV Core-core repulsion = 25391.838824 eV Total energy + Delta-G solvation = -3978.640337 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.92855 -40.25118 -39.46747 -36.85729 -34.76311 -34.11102 -31.81869 -31.68132 -31.15917 -30.60229 -29.83658 -28.68722 -25.15412 -24.84689 -24.11562 -23.31933 -22.15343 -21.57857 -21.03266 -20.43662 -19.19950 -18.27618 -17.06965 -16.60604 -16.33956 -16.17408 -15.83120 -15.65084 -15.36927 -14.84200 -14.42340 -14.31669 -14.09833 -14.04569 -13.70327 -13.51570 -13.34013 -12.92509 -12.85825 -12.64743 -12.33133 -12.12535 -11.72215 -11.46669 -11.20155 -11.18520 -11.11054 -10.93990 -10.71244 -10.57635 -10.45489 -9.96906 -9.90045 -9.60343 -9.52604 -9.45811 -8.94162 -8.66764 -8.59041 -8.09308 -6.55635 -5.46078 -2.72668 0.37033 0.72652 1.83897 1.93531 2.14585 3.32566 3.47071 3.54627 3.59849 3.61872 3.86293 4.04456 4.10206 4.38289 4.53037 4.59432 4.67348 4.69851 4.77431 4.81109 4.97410 5.01133 5.18370 5.20682 5.34510 5.36934 5.39995 5.41349 5.54062 5.62727 5.71106 5.75640 5.81099 5.88534 6.01573 6.09607 6.15782 6.21688 6.26522 6.51240 6.66185 6.72412 6.86737 7.04592 7.27568 7.59212 7.89809 8.01869 8.66314 8.91761 9.84763 10.51076 10.91976 11.74800 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.008983 B = 0.003667 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3116.140439 B = 7634.150252 C =10352.925886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.011 4.011 3 Si 0.894 3.106 4 H -0.283 1.283 5 H -0.294 1.294 6 H -0.295 1.295 7 C -0.233 4.233 8 H 0.060 0.940 9 N -0.720 5.720 10 C 0.145 3.855 11 C 0.133 3.867 12 H 0.074 0.926 13 C -0.124 4.124 14 C -0.133 4.133 15 C 0.088 3.912 16 N -0.612 5.612 17 C 0.583 3.417 18 O -0.457 6.457 19 C -0.252 4.252 20 C 0.077 3.923 21 N -0.294 5.294 22 N -0.323 5.323 23 C 0.209 3.791 24 C -0.195 4.195 25 C 0.129 3.871 26 N -0.495 5.495 27 C 0.122 3.878 28 C -0.175 4.175 29 C 0.126 3.874 30 H 0.247 0.753 31 H 0.400 0.600 32 H 0.018 0.982 33 H 0.017 0.983 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.080 0.920 38 H 0.067 0.933 39 H 0.078 0.922 40 H 0.208 0.792 41 H 0.148 0.852 42 H 0.168 0.832 43 H 0.165 0.835 44 H 0.149 0.851 45 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.305 -16.207 12.902 21.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.207 4.207 3 Si 0.726 3.274 4 H -0.209 1.209 5 H -0.222 1.222 6 H -0.223 1.223 7 C -0.365 4.365 8 H 0.078 0.922 9 N -0.371 5.371 10 C 0.015 3.985 11 C 0.030 3.970 12 H 0.092 0.908 13 C -0.163 4.163 14 C -0.171 4.171 15 C -0.035 4.035 16 N -0.350 5.350 17 C 0.369 3.631 18 O -0.327 6.327 19 C -0.266 4.266 20 C -0.112 4.112 21 N -0.111 5.111 22 N -0.097 5.097 23 C 0.108 3.892 24 C -0.217 4.217 25 C -0.028 4.028 26 N -0.205 5.205 27 C -0.035 4.035 28 C -0.197 4.197 29 C -0.018 4.018 30 H 0.057 0.943 31 H 0.243 0.757 32 H 0.036 0.964 33 H 0.034 0.966 34 H 0.098 0.902 35 H 0.096 0.904 36 H 0.093 0.907 37 H 0.099 0.901 38 H 0.085 0.915 39 H 0.096 0.904 40 H 0.224 0.776 41 H 0.166 0.834 42 H 0.185 0.815 43 H 0.182 0.818 44 H 0.167 0.833 45 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -5.109 -15.495 14.528 21.846 hybrid contribution 1.087 0.902 -1.489 2.052 sum -4.022 -14.593 13.039 19.978 Atomic orbital electron populations 1.69761 1.04694 1.24279 1.57705 1.24648 0.95339 0.96946 1.03778 0.86306 0.78810 0.85282 0.76972 1.20901 1.22169 1.22277 1.19186 0.90494 0.84765 1.42044 0.92158 1.42892 1.07191 0.98783 1.88277 1.20994 0.93281 0.86762 0.97416 1.21864 0.97510 0.95399 0.82199 0.90807 1.22635 1.00625 0.93722 0.99320 1.22809 1.01707 0.97272 0.95276 1.22686 0.99728 0.84467 0.96663 1.48153 1.57264 1.16694 1.12869 1.16830 0.79094 0.83020 0.84121 1.90991 1.52241 1.23745 1.65725 1.20500 1.09224 0.99347 0.97483 1.25021 0.97723 0.98647 0.89766 1.77193 1.11211 1.00264 1.22469 1.45546 1.36499 1.18849 1.08821 1.17833 0.91414 0.93071 0.86923 1.22041 1.00588 0.96029 1.03081 1.22696 0.94495 0.98575 0.87008 1.67715 1.20317 1.08525 1.23931 1.22732 0.91013 0.91194 0.98566 1.21932 1.02931 1.02909 0.91960 1.23129 0.96617 0.98627 0.83459 0.94294 0.75736 0.96393 0.96588 0.90183 0.90366 0.90672 0.90149 0.91481 0.90364 0.77601 0.83431 0.81500 0.81809 0.83289 0.78721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -29.26 13.06 55.49 0.72 -28.54 16 2 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 3 Si 0.89 23.61 29.55 -169.99 -5.02 18.58 16 4 H -0.28 -7.27 7.11 56.52 0.40 -6.87 16 5 H -0.29 -7.75 7.11 56.52 0.40 -7.35 16 6 H -0.30 -7.83 7.11 56.52 0.40 -7.43 16 7 C -0.23 -6.99 9.99 -15.06 -0.15 -7.14 16 8 H 0.06 1.77 7.83 -52.49 -0.41 1.36 16 9 N -0.72 -19.66 4.20 -59.91 -0.25 -19.91 16 10 C 0.14 3.08 5.62 -4.04 -0.02 3.06 16 11 C 0.13 2.22 3.07 -66.96 -0.21 2.01 16 12 H 0.07 1.35 8.13 -51.93 -0.42 0.92 16 13 C -0.12 -1.41 6.45 -24.90 -0.16 -1.57 16 14 C -0.13 -1.17 7.10 -24.46 -0.17 -1.34 16 15 C 0.09 0.93 5.27 -2.41 -0.01 0.92 16 16 N -0.61 -9.76 3.06 -164.15 -0.50 -10.26 16 17 C 0.58 11.10 7.64 -12.52 -0.10 11.01 16 18 O -0.46 -11.21 13.07 5.27 0.07 -11.14 16 19 C -0.25 -3.97 6.06 -105.05 -0.64 -4.60 16 20 C 0.08 0.98 10.29 -16.95 -0.17 0.81 16 21 N -0.29 -3.96 11.87 30.88 0.37 -3.60 16 22 N -0.32 -4.39 3.76 -10.03 -0.04 -4.43 16 23 C 0.21 2.47 6.73 -83.36 -0.56 1.91 16 24 C -0.19 -2.01 9.52 -39.26 -0.37 -2.39 16 25 C 0.13 1.22 11.17 -17.59 -0.20 1.02 16 26 N -0.50 -5.17 10.36 -13.32 -0.14 -5.31 16 27 C 0.12 1.10 11.18 -17.59 -0.20 0.90 16 28 C -0.18 -1.78 9.73 -39.26 -0.38 -2.16 16 29 C 0.13 1.88 10.65 -16.41 -0.17 1.70 16 30 H 0.25 7.62 8.31 -40.82 -0.34 7.28 16 31 H 0.40 11.66 4.94 -40.82 -0.20 11.46 16 32 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.02 0.34 8.10 -51.93 -0.42 -0.08 16 34 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.08 0.85 7.85 -51.93 -0.41 0.44 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.65 8.02 -51.93 -0.42 0.24 16 39 H 0.08 0.69 5.27 -51.93 -0.27 0.42 16 40 H 0.21 1.93 4.80 -52.48 -0.25 1.67 16 41 H 0.15 1.36 6.85 -52.48 -0.36 1.00 16 42 H 0.17 1.11 8.06 -52.49 -0.42 0.69 16 43 H 0.16 0.96 8.06 -52.49 -0.42 0.54 16 44 H 0.15 1.40 7.78 -52.49 -0.41 0.99 16 45 H 0.20 2.73 7.09 -52.49 -0.37 2.36 16 LS Contribution 369.88 15.07 5.57 5.57 Total: -1.00 -38.52 369.88 -8.45 -46.97 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: -5.62 Total: 8.33 kcal Atomic # 6 Polarization: 7.33 SS G_CDS: -3.61 Total: 3.72 kcal Atomic # 7 Polarization: -72.19 SS G_CDS: 0.16 Total: -72.03 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: 0.07 Total: -11.14 kcal Atomic # 14 Polarization: 23.61 SS G_CDS: -5.02 Total: 18.58 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -38.52 -8.45 -46.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483951120.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.856 kcal (2) G-P(sol) polarization free energy of solvation -38.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 146.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.968 kcal (6) G-S(sol) free energy of system = (1) + (5) 137.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds