Wall clock time and date at job start Sat Apr 11 2020 06:21:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86798 * 120.00147 * 2 1 4 4 H 1.48505 * 109.46848 * 270.00074 * 3 2 1 5 5 H 1.48502 * 109.47242 * 29.99298 * 3 2 1 6 6 H 1.48494 * 109.47540 * 149.99641 * 3 2 1 7 7 C 1.38800 * 119.99693 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00331 * 0.02562 * 7 2 1 9 9 S 1.76199 * 119.99510 * 180.02562 * 7 2 1 10 10 C 1.81005 * 99.99792 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.47110 * 179.97438 * 10 9 7 12 12 O 1.21284 * 120.00299 * 359.97438 * 11 10 9 13 13 N 1.34775 * 119.99900 * 180.02562 * 11 10 9 14 14 C 1.46504 * 120.00021 * 180.02562 * 13 11 10 15 15 C 1.53783 * 113.61476 * 154.99921 * 14 13 11 16 16 C 1.53779 * 87.08207 * 89.11552 * 15 14 13 17 17 C 1.52993 * 113.61372 * 139.97894 * 16 15 14 18 18 N 1.46899 * 109.47230 * 176.53062 * 17 16 15 19 19 C 1.46902 * 111.00195 * 180.02562 * 18 17 16 20 20 C 1.50700 * 109.47445 * 180.02562 * 19 18 17 21 21 O 1.21286 * 119.99450 * 359.97438 * 20 19 18 22 22 N 1.34772 * 120.00116 * 180.02562 * 20 19 18 23 23 C 1.47066 * 136.05397 * 179.97438 * 22 20 19 24 24 C 1.53503 * 87.98596 * 152.84244 * 23 22 20 25 25 C 1.47060 * 136.06000 * 359.94777 * 22 20 19 26 26 C 1.53784 * 87.17330 * 25.39223 * 16 15 14 27 27 H 0.97000 * 119.99940 * 359.97438 * 1 2 3 28 28 H 1.09005 * 109.46663 * 60.00489 * 10 9 7 29 29 H 1.08992 * 109.47366 * 300.00058 * 10 9 7 30 30 H 0.96998 * 119.99924 * 359.97438 * 13 11 10 31 31 H 1.09000 * 112.85001 * 23.80410 * 14 13 11 32 32 H 1.09001 * 113.60949 * 334.56660 * 15 14 13 33 33 H 1.08998 * 113.61586 * 203.66586 * 15 14 13 34 34 H 1.08997 * 113.61667 * 270.80277 * 16 15 14 35 35 H 1.09003 * 109.47110 * 56.53009 * 17 16 15 36 36 H 1.09003 * 109.47539 * 296.53019 * 17 16 15 37 37 H 1.00899 * 110.99891 * 56.04940 * 18 17 16 38 38 H 1.09004 * 109.47159 * 60.00204 * 19 18 17 39 39 H 1.08998 * 109.46983 * 300.00116 * 19 18 17 40 40 H 1.09000 * 113.46827 * 267.61848 * 23 22 20 41 41 H 1.09003 * 113.47151 * 38.06638 * 23 22 20 42 42 H 1.08997 * 114.20730 * 139.65037 * 24 23 22 43 43 H 1.08995 * 114.20536 * 272.48261 * 24 23 22 44 44 H 1.09007 * 113.46761 * 321.93701 * 25 22 20 45 45 H 1.09003 * 113.46830 * 92.37669 * 25 22 20 46 46 H 1.08993 * 113.61828 * 89.15569 * 26 16 15 47 47 H 1.08995 * 113.61267 * 220.06425 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6527 0.6999 6 1 3.5479 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1373 0.0005 9 16 3.7723 -1.2020 0.0012 10 6 4.0866 -2.9846 0.0009 11 6 5.5730 -3.2326 0.0008 12 8 6.3440 -2.2964 0.0005 13 7 6.0456 -4.4947 0.0001 14 6 7.4907 -4.7358 0.0006 15 6 7.8879 -6.0973 0.5952 16 6 7.7386 -6.6720 -0.8233 17 6 8.8190 -7.6919 -1.1881 18 7 8.5435 -8.2411 -2.5225 19 6 9.5626 -9.2268 -2.9068 20 6 9.2477 -9.7664 -4.2782 21 8 8.2702 -9.3692 -4.8763 22 7 10.0517 -10.6910 -4.8396 23 6 10.0852 -11.4354 -6.1075 24 6 11.6090 -11.5313 -5.9483 25 6 11.2816 -11.3991 -4.4542 26 6 8.0279 -5.2548 -1.3457 27 1 -0.4850 0.8400 0.0004 28 1 3.6440 -3.4313 -0.8894 29 1 3.6433 -3.4318 0.8906 30 1 5.4290 -5.2435 0.0000 31 1 8.0592 -3.8993 0.4068 32 1 7.1612 -6.4923 1.3051 33 1 8.9098 -6.1273 0.9732 34 1 6.7316 -7.0232 -1.0484 35 1 8.8187 -8.4993 -0.4558 36 1 9.7937 -7.2039 -1.1903 37 1 8.4748 -7.5051 -3.2092 38 1 9.5670 -10.0448 -2.1864 39 1 10.5426 -8.7497 -2.9208 40 1 9.5820 -12.4010 -6.0574 41 1 9.7752 -10.8420 -6.9677 42 1 12.0279 -12.4973 -6.2300 43 1 12.1558 -10.6845 -6.3629 44 1 11.9890 -10.7747 -3.9083 45 1 11.0967 -12.3550 -3.9641 46 1 9.0881 -5.0540 -1.4994 47 1 7.4140 -4.9709 -2.2004 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485086318.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:55 Heat of formation + Delta-G solvation = -8.284689 kcal Electronic energy + Delta-G solvation = -25770.671661 eV Core-core repulsion = 21888.844017 eV Total energy + Delta-G solvation = -3881.827644 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.78351 -40.21497 -38.55766 -38.11500 -35.68156 -33.10032 -32.40979 -30.95623 -29.54828 -28.30057 -26.64241 -25.97120 -25.60087 -25.08614 -22.56886 -22.27622 -20.87895 -19.59826 -19.19345 -17.89902 -17.65535 -17.06336 -16.68188 -16.38617 -16.08466 -15.84728 -15.22559 -15.06671 -14.91469 -14.72617 -14.43509 -14.11219 -13.61751 -13.52929 -13.32810 -13.26320 -13.17321 -13.08030 -12.77685 -12.71319 -12.48359 -12.24520 -12.13812 -11.75093 -11.39023 -11.25335 -11.18315 -10.98550 -10.68398 -10.59355 -10.35078 -10.15122 -9.83284 -9.50161 -9.27355 -8.98697 -8.91180 -8.87636 -8.47449 -6.88950 -6.26255 -3.97842 2.13249 2.28882 2.78334 2.97452 3.32017 3.36286 3.52710 3.58946 3.67681 3.72142 4.00074 4.28664 4.31867 4.35651 4.40710 4.50111 4.60342 4.68359 4.72419 4.77400 4.77907 4.79844 4.85629 5.02004 5.05610 5.10209 5.12849 5.17983 5.24696 5.28272 5.36502 5.46595 5.49379 5.52955 5.78292 5.79732 5.87239 5.90822 6.04573 6.10016 6.47615 6.66746 6.91448 7.19883 7.65314 7.73733 7.96866 8.44701 8.52307 9.19948 10.83022 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.022927 B = 0.001524 C = 0.001472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.998555 B =18369.492062 C =19015.196523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.096 3.904 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.521 4.521 8 H 0.088 0.912 9 S -0.142 6.142 10 C -0.124 4.124 11 C 0.534 3.466 12 O -0.519 6.519 13 N -0.719 5.719 14 C 0.126 3.874 15 C -0.139 4.139 16 C -0.108 4.108 17 C 0.072 3.928 18 N -0.674 5.674 19 C 0.050 3.950 20 C 0.539 3.461 21 O -0.520 6.520 22 N -0.655 5.655 23 C 0.103 3.897 24 C -0.156 4.156 25 C 0.098 3.902 26 C -0.153 4.153 27 H 0.270 0.730 28 H 0.097 0.903 29 H 0.098 0.902 30 H 0.400 0.600 31 H 0.101 0.899 32 H 0.076 0.924 33 H 0.092 0.908 34 H 0.101 0.899 35 H 0.074 0.926 36 H 0.033 0.967 37 H 0.354 0.646 38 H 0.100 0.900 39 H 0.057 0.943 40 H 0.085 0.915 41 H 0.078 0.922 42 H 0.091 0.909 43 H 0.095 0.905 44 H 0.078 0.922 45 H 0.087 0.913 46 H 0.085 0.915 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.567 -27.624 -6.119 39.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.113 4.113 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.669 4.669 8 H 0.106 0.894 9 S 0.084 5.916 10 C -0.275 4.275 11 C 0.320 3.680 12 O -0.394 6.394 13 N -0.372 5.372 14 C 0.019 3.981 15 C -0.178 4.178 16 C -0.127 4.127 17 C -0.057 4.057 18 N -0.307 5.307 19 C -0.083 4.083 20 C 0.328 3.672 21 O -0.394 6.394 22 N -0.393 5.393 23 C -0.020 4.020 24 C -0.194 4.194 25 C -0.025 4.025 26 C -0.192 4.192 27 H 0.080 0.920 28 H 0.116 0.884 29 H 0.116 0.884 30 H 0.235 0.765 31 H 0.119 0.881 32 H 0.094 0.906 33 H 0.110 0.890 34 H 0.119 0.881 35 H 0.092 0.908 36 H 0.051 0.949 37 H 0.173 0.827 38 H 0.118 0.882 39 H 0.075 0.925 40 H 0.103 0.897 41 H 0.097 0.903 42 H 0.110 0.890 43 H 0.113 0.887 44 H 0.097 0.903 45 H 0.105 0.895 46 H 0.104 0.896 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 27.531 -26.005 -6.092 38.358 hybrid contribution -0.352 -0.316 -0.207 0.517 sum 27.178 -26.321 -6.299 38.355 Atomic orbital electron populations 1.69943 1.05914 1.27734 1.48122 1.24710 0.94441 0.98942 0.93181 0.86732 0.81883 0.83288 0.79926 1.19218 1.19949 1.15940 1.22326 0.88291 0.97559 1.58731 0.89375 1.84771 1.09267 1.00089 1.97430 1.23285 0.93970 1.04370 1.05885 1.20298 0.90564 0.82293 0.74873 1.90692 1.58755 1.42202 1.47711 1.45661 1.06458 1.08045 1.77010 1.21717 0.82283 0.97688 0.96389 1.23332 1.02533 0.95586 0.96370 1.22632 1.00140 0.93731 0.96207 1.21987 0.96546 0.97059 0.90126 1.60141 1.46727 1.19208 1.04625 1.21696 0.94781 0.97859 0.93933 1.20253 0.81260 0.78448 0.87234 1.90760 1.26413 1.58786 1.63444 1.49738 1.28204 1.40265 1.21137 1.22930 0.95282 0.96144 0.87601 1.23400 0.96212 1.03798 0.95993 1.23026 0.85162 0.96798 0.97507 1.23573 1.01545 0.95469 0.98606 0.91964 0.88426 0.88409 0.76529 0.88054 0.90578 0.88951 0.88079 0.90761 0.94860 0.82678 0.88159 0.92473 0.89729 0.90349 0.89008 0.88684 0.90344 0.89496 0.89643 0.90707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.89 13.97 55.49 0.78 -26.11 16 2 C 0.10 2.84 5.50 -17.43 -0.10 2.74 16 3 Si 0.86 22.07 27.74 -169.99 -4.72 17.36 16 4 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.24 -6.05 6.74 56.52 0.38 -5.67 16 7 C -0.52 -15.26 10.04 30.94 0.31 -14.95 16 8 H 0.09 2.69 8.03 -52.49 -0.42 2.26 16 9 S -0.14 -3.66 18.55 -107.50 -1.99 -5.65 16 10 C -0.12 -2.46 6.16 36.01 0.22 -2.23 16 11 C 0.53 9.63 7.85 -10.99 -0.09 9.54 16 12 O -0.52 -11.34 15.46 5.55 0.09 -11.25 16 13 N -0.72 -9.32 5.26 -52.92 -0.28 -9.60 16 14 C 0.13 1.40 4.33 -67.02 -0.29 1.11 16 15 C -0.14 -1.08 7.39 -25.92 -0.19 -1.27 16 16 C -0.11 -0.86 3.77 -89.81 -0.34 -1.20 16 17 C 0.07 0.49 5.51 -3.83 -0.02 0.47 16 18 N -0.67 -5.82 6.13 -115.06 -0.70 -6.53 16 19 C 0.05 0.34 6.00 -4.97 -0.03 0.31 16 20 C 0.54 5.16 8.12 -10.99 -0.09 5.07 16 21 O -0.52 -7.43 16.98 5.55 0.09 -7.33 16 22 N -0.65 -4.30 3.69 -185.25 -0.68 -4.99 16 23 C 0.10 0.49 8.61 -8.51 -0.07 0.41 16 24 C -0.16 -0.29 8.49 -26.20 -0.22 -0.51 16 25 C 0.10 0.24 8.41 -8.50 -0.07 0.17 16 26 C -0.15 -1.48 7.44 -25.82 -0.19 -1.67 16 27 H 0.27 7.67 8.31 -40.82 -0.34 7.33 16 28 H 0.10 1.81 8.14 -51.91 -0.42 1.39 16 29 H 0.10 1.79 8.14 -51.92 -0.42 1.36 16 30 H 0.40 4.18 8.70 -40.82 -0.36 3.82 16 31 H 0.10 1.32 7.47 -51.93 -0.39 0.93 16 32 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.09 0.59 8.10 -51.93 -0.42 0.17 16 34 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.03 0.20 7.88 -51.93 -0.41 -0.21 16 37 H 0.35 3.43 8.43 -39.29 -0.33 3.10 16 38 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 40 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.09 0.01 8.14 -51.93 -0.42 -0.42 16 43 H 0.09 0.20 8.14 -51.93 -0.42 -0.23 16 44 H 0.08 0.11 8.14 -51.93 -0.42 -0.31 16 45 H 0.09 0.10 8.14 -51.93 -0.42 -0.32 16 46 H 0.09 0.73 7.92 -51.93 -0.41 0.32 16 47 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 405.15 15.07 6.11 6.11 Total: -1.00 -37.94 405.15 -10.29 -48.24 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -7.81 Total: 1.77 kcal Atomic # 6 Polarization: -0.84 SS G_CDS: -1.17 Total: -2.01 kcal Atomic # 7 Polarization: -46.34 SS G_CDS: -0.89 Total: -47.23 kcal Atomic # 8 Polarization: -18.76 SS G_CDS: 0.18 Total: -18.58 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.72 Total: 17.36 kcal Atomic # 16 Polarization: -3.66 SS G_CDS: -1.99 Total: -5.65 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -37.94 -10.29 -48.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485086318.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.954 kcal (2) G-P(sol) polarization free energy of solvation -37.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds