Wall clock time and date at job start Sat Apr 11 2020 06:19:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86797 * 119.99704 * 2 1 4 4 H 1.48501 * 109.47114 * 239.99786 * 3 2 1 5 5 H 1.48494 * 109.47396 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46977 * 120.00109 * 3 2 1 7 7 C 1.38808 * 120.00011 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99876 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00426 * 0.02562 * 7 2 1 10 10 C 1.46502 * 120.00242 * 179.97438 * 9 7 2 11 11 H 1.08993 * 109.47129 * 34.99974 * 10 9 7 12 12 C 1.52997 * 109.47004 * 155.00151 * 10 9 7 13 13 N 1.46506 * 109.47289 * 304.99911 * 12 10 9 14 14 C 1.34774 * 120.00072 * 180.02562 * 13 12 10 15 15 O 1.21576 * 120.00005 * 0.02562 * 14 13 12 16 16 C 1.47696 * 119.99732 * 180.02562 * 14 13 12 17 17 C 1.41559 * 126.43631 * 179.71587 * 16 14 13 18 18 C 1.35324 * 105.55756 * 179.84333 * 17 16 14 19 19 N 1.35908 * 107.11338 * 0.41181 * 18 17 16 20 20 C 1.39914 * 124.96382 * 179.72824 * 19 18 17 21 21 C 1.39327 * 120.85579 * 359.69969 * 20 19 18 22 22 C 1.38017 * 119.07774 * 179.72971 * 21 20 19 23 23 N 1.31931 * 120.83483 * 0.55197 * 22 21 20 24 24 C 1.31928 * 121.88643 * 359.72243 * 23 22 21 25 25 C 1.38024 * 120.83262 * 359.97438 * 24 23 22 26 26 N 1.28475 * 110.07194 * 359.72623 * 19 18 17 27 27 C 1.53001 * 109.46950 * 274.99820 * 10 9 7 28 28 C 1.53000 * 117.49406 * 128.74727 * 27 10 9 29 29 C 1.52999 * 117.49917 * 60.09188 * 27 10 9 30 30 H 0.96993 * 120.00405 * 0.02562 * 1 2 3 31 31 H 0.97004 * 119.99803 * 359.97438 * 9 7 2 32 32 H 1.09001 * 109.47289 * 184.99783 * 12 10 9 33 33 H 1.09004 * 109.47261 * 65.00039 * 12 10 9 34 34 H 0.97001 * 119.99251 * 0.02562 * 13 12 10 35 35 H 1.08003 * 127.22486 * 359.97438 * 17 16 14 36 36 H 1.08000 * 126.44439 * 180.12124 * 18 17 16 37 37 H 1.08001 * 120.46494 * 359.97232 * 21 20 19 38 38 H 1.08008 * 119.58374 * 180.28702 * 22 21 20 39 39 H 1.07999 * 119.58821 * 180.02562 * 24 23 22 40 40 H 1.08002 * 120.45828 * 180.02562 * 25 24 23 41 41 H 1.09000 * 115.55061 * 274.41676 * 27 10 9 42 42 H 1.09001 * 117.50211 * 0.02562 * 28 27 10 43 43 H 1.09004 * 117.49834 * 145.02254 * 28 27 10 44 44 H 1.09000 * 117.49978 * 214.98132 * 29 27 10 45 45 H 1.09005 * 117.49789 * 359.97438 * 29 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7464 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0582 -3.6568 0.0005 11 1 2.9688 -3.5505 0.5899 12 6 1.1810 -4.7521 0.6101 13 7 0.7343 -4.3355 1.9418 14 6 -0.0546 -5.1478 2.6726 15 8 -0.3953 -6.2264 2.2271 16 6 -0.5054 -4.7274 4.0149 17 6 -1.3357 -5.4654 4.8923 18 6 -1.4757 -4.6933 5.9948 19 7 -0.7712 -3.5519 5.7758 20 6 -0.6671 -2.4882 6.6787 21 6 -1.3133 -2.5321 7.9122 22 6 -1.1811 -1.4647 8.7771 23 7 -0.4635 -0.4090 8.4437 24 6 0.1586 -0.3275 7.2831 25 6 0.0812 -1.3554 6.3653 26 7 -0.2147 -3.5924 4.6185 27 6 2.4220 -4.0356 -1.4365 28 6 3.8823 -4.3891 -1.7256 29 6 3.3029 -3.0622 -2.2222 30 1 -0.4850 0.8399 -0.0004 31 1 0.3556 -2.3881 0.0005 32 1 1.7559 -5.6746 0.6918 33 1 0.3134 -4.9201 -0.0281 34 1 1.0065 -3.4750 2.2973 35 1 -1.7654 -6.4410 4.7192 36 1 -2.0445 -4.9361 6.8801 37 1 -1.9063 -3.3911 8.1894 38 1 -1.6747 -1.4922 9.7374 39 1 0.7365 0.5542 7.0486 40 1 0.5932 -1.2825 5.4171 41 1 1.6541 -4.5774 -1.9886 42 1 4.5836 -4.3522 -0.8921 43 1 4.0751 -5.1632 -2.4684 44 1 3.1148 -2.9638 -3.2913 45 1 3.6229 -2.1516 -1.7155 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001490686921.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:43 Heat of formation + Delta-G solvation = 130.208229 kcal Electronic energy + Delta-G solvation = -28652.141490 eV Core-core repulsion = 24673.168149 eV Total energy + Delta-G solvation = -3978.973341 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.08899 -40.30489 -39.13680 -37.49892 -34.67138 -34.59888 -33.38414 -31.97672 -31.15164 -30.79371 -30.31135 -28.07051 -25.29787 -24.22056 -23.66383 -22.77688 -21.77175 -21.61119 -21.38898 -20.06125 -19.41852 -18.92123 -17.57593 -16.91220 -16.38797 -16.36011 -16.18494 -15.58572 -15.20352 -15.15851 -14.78601 -14.42671 -14.14039 -14.08191 -13.94837 -13.81775 -13.63912 -13.32501 -13.10190 -12.80115 -12.12331 -12.09733 -11.37906 -11.18122 -11.02931 -10.95781 -10.87023 -10.85224 -10.71362 -10.16026 -10.04884 -9.94486 -9.90208 -9.61058 -9.52139 -9.47541 -9.29934 -8.97510 -8.92038 -8.60482 -7.04374 -5.80596 -3.10274 0.33691 0.72059 1.78467 2.03346 2.07694 3.39048 3.43183 3.44693 3.45713 3.46960 3.60347 3.99264 4.08621 4.30857 4.41381 4.56979 4.58981 4.59517 4.76303 5.01637 5.17746 5.22857 5.31360 5.39398 5.45743 5.49025 5.52079 5.57280 5.61224 5.71080 5.75056 5.90136 6.00036 6.06805 6.17074 6.17667 6.22044 6.39995 6.54670 6.59738 6.62126 6.77034 6.87549 6.98028 7.57754 7.60089 7.64753 7.97594 8.35695 8.49296 9.47958 10.02150 10.38280 11.41059 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.008857 B = 0.003539 C = 0.002668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3160.667600 B = 7909.157003 C =10493.743886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.007 4.007 3 Si 0.902 3.098 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.286 1.286 7 C -0.238 4.238 8 H 0.070 0.930 9 N -0.716 5.716 10 C 0.193 3.807 11 H 0.055 0.945 12 C 0.118 3.882 13 N -0.695 5.695 14 C 0.598 3.402 15 O -0.543 6.543 16 C 0.010 3.990 17 C -0.166 4.166 18 C -0.019 4.019 19 N -0.244 5.244 20 C 0.188 3.812 21 C -0.188 4.188 22 C 0.122 3.878 23 N -0.489 5.489 24 C 0.126 3.874 25 C -0.161 4.161 26 N -0.245 5.245 27 C -0.159 4.159 28 C -0.196 4.196 29 C -0.156 4.156 30 H 0.255 0.745 31 H 0.386 0.614 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.417 0.583 35 H 0.170 0.830 36 H 0.186 0.814 37 H 0.145 0.855 38 H 0.166 0.834 39 H 0.170 0.830 40 H 0.159 0.841 41 H 0.091 0.909 42 H 0.086 0.914 43 H 0.081 0.919 44 H 0.079 0.921 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.244 -8.200 14.911 17.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.204 4.204 3 Si 0.733 3.267 4 H -0.213 1.213 5 H -0.218 1.218 6 H -0.213 1.213 7 C -0.369 4.369 8 H 0.088 0.912 9 N -0.357 5.357 10 C 0.082 3.918 11 H 0.073 0.927 12 C -0.007 4.007 13 N -0.346 5.346 14 C 0.382 3.618 15 O -0.420 6.420 16 C -0.153 4.153 17 C -0.193 4.193 18 C -0.157 4.157 19 N -0.026 5.026 20 C 0.089 3.911 21 C -0.210 4.210 22 C -0.035 4.035 23 N -0.198 5.198 24 C -0.031 4.031 25 C -0.182 4.182 26 N -0.077 5.077 27 C -0.180 4.180 28 C -0.234 4.234 29 C -0.193 4.193 30 H 0.065 0.935 31 H 0.220 0.780 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.255 0.745 35 H 0.188 0.812 36 H 0.203 0.797 37 H 0.162 0.838 38 H 0.184 0.816 39 H 0.187 0.813 40 H 0.176 0.824 41 H 0.109 0.891 42 H 0.105 0.895 43 H 0.099 0.901 44 H 0.098 0.902 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -0.713 -7.063 15.068 16.657 hybrid contribution -0.371 -0.083 -0.571 0.686 sum -1.084 -7.146 14.497 16.199 Atomic orbital electron populations 1.69649 1.05045 1.25741 1.57129 1.24699 0.95386 0.97483 1.02829 0.86361 0.78589 0.83908 0.77857 1.21281 1.21797 1.21305 1.19100 0.90763 0.83847 1.43159 0.91210 1.42437 1.05820 0.99379 1.88053 1.20051 0.94332 0.86105 0.91275 0.92666 1.21683 0.98807 0.97747 0.82436 1.45860 1.49343 1.21787 1.17623 1.16799 0.78752 0.84134 0.82163 1.90770 1.57781 1.22317 1.71093 1.22282 1.03093 0.92482 0.97483 1.21877 1.02602 1.02282 0.92534 1.23039 1.02607 0.87566 1.02524 1.42682 1.35438 1.13161 1.11322 1.17921 0.97667 0.86951 0.88595 1.21875 1.03297 1.02655 0.93200 1.22675 0.94260 0.87694 0.98916 1.67720 1.07850 1.25482 1.18796 1.22849 0.94782 0.97588 0.87865 1.22189 1.00176 0.92632 1.03225 1.73692 1.18218 1.21543 0.94206 1.23023 0.92171 1.03092 0.99757 1.22963 0.97285 0.99819 1.03348 1.22778 1.03374 0.94042 0.99089 0.93477 0.78025 0.91301 0.91451 0.74543 0.81211 0.79661 0.83774 0.81639 0.81307 0.82369 0.89083 0.89548 0.90083 0.90227 0.87718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.83 13.06 55.49 0.72 -26.10 16 2 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 3 Si 0.90 21.47 29.55 -169.99 -5.02 16.44 16 4 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 6 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.24 -6.05 8.63 -15.06 -0.13 -6.18 16 8 H 0.07 1.73 6.91 -52.49 -0.36 1.37 16 9 N -0.72 -16.45 4.54 -53.43 -0.24 -16.69 16 10 C 0.19 3.59 2.70 -67.93 -0.18 3.41 16 11 H 0.06 1.05 7.84 -51.93 -0.41 0.64 16 12 C 0.12 2.03 5.21 -4.04 -0.02 2.00 16 13 N -0.70 -12.33 5.39 -61.29 -0.33 -12.66 16 14 C 0.60 10.69 7.82 -12.40 -0.10 10.59 16 15 O -0.54 -10.67 16.92 5.30 0.09 -10.58 16 16 C 0.01 0.16 7.13 -82.75 -0.59 -0.43 16 17 C -0.17 -2.10 10.80 -39.36 -0.42 -2.53 16 18 C -0.02 -0.20 10.82 -16.79 -0.18 -0.38 16 19 N -0.24 -3.18 3.51 -10.37 -0.04 -3.21 16 20 C 0.19 2.17 6.70 -83.36 -0.56 1.61 16 21 C -0.19 -1.56 9.50 -39.26 -0.37 -1.93 16 22 C 0.12 1.00 11.17 -17.59 -0.20 0.80 16 23 N -0.49 -5.17 10.36 -13.32 -0.14 -5.31 16 24 C 0.13 1.32 11.18 -17.59 -0.20 1.13 16 25 C -0.16 -1.92 9.67 -39.26 -0.38 -2.29 16 26 N -0.24 -3.88 10.94 33.43 0.37 -3.51 16 27 C -0.16 -2.75 5.36 -90.62 -0.49 -3.23 16 28 C -0.20 -2.96 10.18 -26.70 -0.27 -3.23 16 29 C -0.16 -2.75 9.78 -26.70 -0.26 -3.01 16 30 H 0.26 7.27 8.31 -40.82 -0.34 6.94 16 31 H 0.39 9.77 7.80 -40.82 -0.32 9.45 16 32 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 33 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.42 7.78 7.86 -40.82 -0.32 7.46 16 35 H 0.17 1.83 8.06 -52.48 -0.42 1.40 16 36 H 0.19 1.08 7.04 -52.49 -0.37 0.71 16 37 H 0.14 0.74 6.78 -52.49 -0.36 0.38 16 38 H 0.17 0.79 8.06 -52.48 -0.42 0.37 16 39 H 0.17 1.41 8.06 -52.49 -0.42 0.99 16 40 H 0.16 2.07 7.74 -52.49 -0.41 1.66 16 41 H 0.09 1.54 8.11 -51.93 -0.42 1.12 16 42 H 0.09 1.26 8.05 -51.93 -0.42 0.84 16 43 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 44 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 45 H 0.10 2.07 6.23 -51.93 -0.32 1.75 16 LS Contribution 387.15 15.07 5.83 5.83 Total: -1.00 -32.00 387.15 -9.00 -41.00 By element: Atomic # 1 Polarization: 24.55 SS G_CDS: -5.80 Total: 18.76 kcal Atomic # 6 Polarization: 0.47 SS G_CDS: -4.45 Total: -3.97 kcal Atomic # 7 Polarization: -67.83 SS G_CDS: 0.34 Total: -67.48 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: 0.09 Total: -10.58 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.00 -9.00 -41.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490686921.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.212 kcal (2) G-P(sol) polarization free energy of solvation -32.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.004 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds