Wall clock time and date at job start Sat Apr 11 2020 06:20:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86803 * 119.99961 * 2 1 4 4 H 1.48504 * 109.47028 * 269.99220 * 3 2 1 5 5 H 1.48496 * 109.47221 * 29.99852 * 3 2 1 6 6 H 1.48498 * 109.47131 * 149.99473 * 3 2 1 7 7 C 1.38815 * 120.00115 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99854 * 0.02562 * 7 2 1 9 9 N 1.36938 * 119.99821 * 180.02562 * 7 2 1 10 10 C 1.46506 * 119.99589 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47035 * 179.97438 * 10 9 7 12 12 H 1.09002 * 110.88579 * 308.88105 * 11 10 9 13 13 C 1.55150 * 111.00522 * 184.99752 * 11 10 9 14 14 C 1.54325 * 102.94486 * 206.42157 * 13 11 10 15 15 N 1.47019 * 107.26681 * 22.19482 * 14 13 11 16 16 C 1.34783 * 125.64508 * 181.01366 * 15 14 13 17 17 O 1.21515 * 119.99902 * 180.02562 * 16 15 14 18 18 C 1.48154 * 120.00018 * 0.02580 * 16 15 14 19 19 C 1.39235 * 119.68785 * 179.73174 * 18 16 15 20 20 C 1.38713 * 119.19016 * 179.70822 * 19 18 16 21 21 C 1.38404 * 118.55641 * 0.55178 * 20 19 18 22 22 C 1.39264 * 119.30228 * 359.72640 * 21 20 19 23 23 N 1.39813 * 119.62150 * 180.02562 * 22 21 20 24 24 C 1.35847 * 126.10202 * 179.97438 * 23 22 21 25 25 C 1.35276 * 107.61338 * 179.97438 * 24 23 22 26 26 C 1.39959 * 107.96936 * 359.97438 * 25 24 23 27 27 N 1.30821 * 108.36782 * 359.71538 * 26 25 24 28 28 N 1.31981 * 120.75858 * 359.97438 * 22 21 20 29 29 C 1.47419 * 108.70567 * 1.05648 * 15 14 13 30 30 H 0.97000 * 120.00334 * 0.02562 * 1 2 3 31 31 H 0.96999 * 120.00331 * 359.97438 * 9 7 2 32 32 H 1.09004 * 109.47073 * 299.99655 * 10 9 7 33 33 H 1.09000 * 109.47212 * 59.99738 * 10 9 7 34 34 H 1.09001 * 110.71965 * 324.79002 * 13 11 10 35 35 H 1.09007 * 110.72172 * 87.87830 * 13 11 10 36 36 H 1.09000 * 109.87845 * 141.61127 * 14 13 11 37 37 H 1.08999 * 109.87901 * 262.77703 * 14 13 11 38 38 H 1.07999 * 120.40553 * 359.97438 * 19 18 16 39 39 H 1.08003 * 120.72054 * 180.25562 * 20 19 18 40 40 H 1.08007 * 120.34907 * 179.75580 * 21 20 19 41 41 H 1.07997 * 126.19450 * 359.97438 * 24 23 22 42 42 H 1.07994 * 126.01757 * 179.97438 * 25 24 23 43 43 H 1.07997 * 125.81917 * 180.02562 * 26 25 24 44 44 H 1.09005 * 110.36909 * 217.03491 * 29 15 14 45 45 H 1.09000 * 110.36656 * 94.71617 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5476 1.4402 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2021 0.0011 10 6 4.1121 -2.4709 0.0011 11 6 5.6163 -2.1913 0.0011 12 1 5.8816 -1.4918 -0.7917 13 6 6.4268 -3.5083 -0.1251 14 6 7.7664 -3.1564 0.5555 15 7 7.5142 -2.0204 1.4540 16 6 8.4374 -1.4027 2.2174 17 8 8.1144 -0.4698 2.9259 18 6 9.8460 -1.8612 2.1928 19 6 10.7955 -1.2148 2.9798 20 6 12.1101 -1.6565 2.9534 21 6 12.4336 -2.7225 2.1321 22 6 11.4357 -3.3199 1.3660 23 7 11.7549 -4.3976 0.5344 24 6 10.8904 -5.0755 -0.2647 25 6 11.5927 -6.0401 -0.9020 26 6 12.9253 -5.9521 -0.4834 27 7 13.0248 -4.9661 0.3707 28 7 10.1920 -2.8812 1.4167 29 6 6.0842 -1.6694 1.3825 30 1 -0.4851 0.8400 -0.0004 31 1 3.8646 -0.3621 0.0007 32 1 3.8484 -3.0426 0.8909 33 1 3.8491 -3.0423 -0.8891 34 1 5.9274 -4.3205 0.4031 35 1 6.5798 -3.7681 -1.1726 36 1 8.1260 -4.0104 1.1296 37 1 8.5028 -2.8769 -0.1979 38 1 10.5110 -0.3825 3.6064 39 1 12.8659 -1.1759 3.5570 40 1 13.4490 -3.0875 2.0861 41 1 9.8338 -4.8797 -0.3719 42 1 11.1952 -6.7528 -1.6093 43 1 13.7347 -6.5864 -0.8132 44 1 5.9552 -0.5887 1.4433 45 1 5.5318 -2.1637 2.1817 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001491833607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:02 Heat of formation + Delta-G solvation = 99.508348 kcal Electronic energy + Delta-G solvation = -28797.392997 eV Core-core repulsion = 24817.088410 eV Total energy + Delta-G solvation = -3980.304588 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.63537 -41.69729 -40.45313 -38.91993 -36.63608 -34.74589 -34.37861 -33.63449 -32.30748 -31.38140 -30.59641 -30.17705 -27.72743 -25.95115 -25.14655 -24.48627 -23.25839 -22.37820 -21.95312 -21.55641 -20.82754 -19.68783 -19.12203 -18.65608 -17.56688 -17.24895 -16.91096 -16.70706 -16.64639 -16.48178 -15.98766 -15.60952 -15.51858 -14.96049 -14.73205 -14.70229 -14.56294 -14.32829 -14.12448 -13.99039 -13.74830 -13.65299 -13.45190 -13.31997 -13.06326 -12.83864 -12.21025 -12.08747 -11.95025 -11.88001 -11.83074 -11.64810 -11.58472 -11.58367 -11.11469 -10.99983 -10.76899 -10.24218 -9.83698 -9.36369 -9.30392 -8.04024 -5.36744 -0.67595 -0.28223 0.95377 0.99493 1.36313 1.38488 1.45246 1.57196 1.70287 1.85021 2.46206 2.62751 2.79757 3.26286 3.30800 3.39823 3.57623 3.62304 3.77582 3.80036 3.84887 4.00030 4.07641 4.15540 4.28475 4.29816 4.39837 4.51129 4.52795 4.64032 4.72516 4.81164 4.83258 4.88680 4.92977 4.99416 5.04949 5.07463 5.13231 5.21527 5.24321 5.39247 5.60032 5.75564 5.98177 6.12278 6.20210 6.31605 6.66373 6.86150 7.06828 7.83597 8.00493 9.17439 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016782 B = 0.002544 C = 0.002264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.007020 B =11002.963741 C =12361.811413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.982 5.982 2 C -0.062 4.062 3 Si 0.949 3.051 4 H -0.276 1.276 5 H -0.296 1.296 6 H -0.259 1.259 7 C -0.231 4.231 8 H 0.062 0.938 9 N -0.762 5.762 10 C 0.167 3.833 11 C -0.100 4.100 12 H 0.086 0.914 13 C -0.117 4.117 14 C 0.122 3.878 15 N -0.598 5.598 16 C 0.574 3.426 17 O -0.569 6.569 18 C 0.100 3.900 19 C -0.126 4.126 20 C -0.038 4.038 21 C -0.142 4.142 22 C 0.354 3.646 23 N -0.342 5.342 24 C 0.059 3.941 25 C -0.258 4.258 26 C 0.069 3.931 27 N -0.316 5.316 28 N -0.483 5.483 29 C 0.112 3.888 30 H 0.258 0.742 31 H 0.363 0.637 32 H 0.030 0.970 33 H 0.042 0.958 34 H 0.089 0.911 35 H 0.112 0.888 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.159 0.841 39 H 0.193 0.807 40 H 0.165 0.835 41 H 0.192 0.808 42 H 0.183 0.817 43 H 0.227 0.773 44 H 0.055 0.945 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 34.316 -13.101 0.411 36.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.633 5.633 2 C -0.254 4.254 3 Si 0.777 3.223 4 H -0.202 1.202 5 H -0.223 1.223 6 H -0.184 1.184 7 C -0.362 4.362 8 H 0.080 0.920 9 N -0.407 5.407 10 C 0.041 3.959 11 C -0.119 4.119 12 H 0.104 0.896 13 C -0.155 4.155 14 C 0.000 4.000 15 N -0.328 5.328 16 C 0.362 3.638 17 O -0.448 6.448 18 C -0.038 4.038 19 C -0.148 4.148 20 C -0.064 4.064 21 C -0.164 4.164 22 C 0.124 3.876 23 N -0.121 5.121 24 C -0.081 4.081 25 C -0.286 4.286 26 C -0.120 4.120 27 N -0.135 5.135 28 N -0.199 5.199 29 C -0.011 4.011 30 H 0.066 0.934 31 H 0.196 0.804 32 H 0.048 0.952 33 H 0.060 0.940 34 H 0.108 0.892 35 H 0.130 0.870 36 H 0.100 0.900 37 H 0.099 0.901 38 H 0.176 0.824 39 H 0.210 0.790 40 H 0.183 0.817 41 H 0.209 0.791 42 H 0.201 0.799 43 H 0.243 0.757 44 H 0.074 0.926 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 34.069 -12.372 1.115 36.263 hybrid contribution -0.441 1.203 0.042 1.282 sum 33.628 -11.169 1.157 35.453 Atomic orbital electron populations 1.69863 1.06968 1.26592 1.59873 1.25447 0.96063 1.00994 1.02896 0.85490 0.78487 0.80181 0.78123 1.20182 1.22327 1.18402 1.19057 0.82672 0.93547 1.40880 0.91985 1.42805 1.02610 1.04305 1.90994 1.20750 0.88646 0.87332 0.99191 1.22473 0.94690 0.99211 0.95566 0.89590 1.22786 0.93368 0.95983 1.03397 1.22262 0.97583 0.87711 0.92408 1.48458 1.08525 1.33610 1.42244 1.17865 0.84383 0.81899 0.79629 1.90798 1.81024 1.30178 1.42829 1.20512 0.93675 0.93482 0.96157 1.22327 0.93293 1.00707 0.98434 1.21956 0.95940 0.93173 0.95282 1.22096 1.01016 0.97002 0.96286 1.17902 0.89851 0.88164 0.91669 1.45894 1.07536 1.24889 1.33737 1.23386 0.98557 0.93639 0.92531 1.22092 0.93517 1.04512 1.08437 1.24849 0.99162 0.94711 0.93232 1.77418 0.98615 1.13948 1.23475 1.66823 1.18124 1.13672 1.21287 1.22309 0.79936 1.00282 0.98541 0.93353 0.80378 0.95210 0.93958 0.89197 0.86999 0.89960 0.90083 0.82377 0.78964 0.81717 0.79066 0.79939 0.75690 0.92646 0.91293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.65 13.97 21.65 0.30 -63.35 16 2 C -0.06 -3.74 5.50 84.86 0.47 -3.27 16 3 Si 0.95 46.89 27.74 68.60 1.90 48.79 16 4 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 5 H -0.30 -14.86 7.11 99.48 0.71 -14.15 16 6 H -0.26 -11.91 6.52 99.48 0.65 -11.26 16 7 C -0.23 -13.20 10.47 84.03 0.88 -12.32 16 8 H 0.06 3.84 8.06 -2.91 -0.02 3.82 16 9 N -0.76 -35.41 5.35 -343.43 -1.84 -37.25 16 10 C 0.17 5.91 5.72 86.38 0.49 6.40 16 11 C -0.10 -2.72 3.05 -9.40 -0.03 -2.75 16 12 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 13 C -0.12 -2.13 6.42 31.78 0.20 -1.93 16 14 C 0.12 2.36 5.16 86.73 0.45 2.81 16 15 N -0.60 -16.18 3.33 -814.86 -2.71 -18.89 16 16 C 0.57 16.89 7.84 86.88 0.68 17.57 16 17 O -0.57 -20.59 16.57 -3.76 -0.06 -20.66 16 18 C 0.10 2.29 6.72 41.88 0.28 2.57 16 19 C -0.13 -2.21 9.63 22.62 0.22 -1.99 16 20 C -0.04 -0.43 10.16 22.42 0.23 -0.20 16 21 C -0.14 -2.02 9.70 22.56 0.22 -1.80 16 22 C 0.35 6.64 7.55 132.94 1.00 7.64 16 23 N -0.34 -6.13 3.81 -192.19 -0.73 -6.86 16 24 C 0.06 0.84 11.10 83.39 0.93 1.77 16 25 C -0.26 -2.68 10.80 22.00 0.24 -2.44 16 26 C 0.07 0.75 12.02 85.26 1.02 1.77 16 27 N -0.32 -5.30 11.83 -56.98 -0.67 -5.97 16 28 N -0.48 -9.87 6.34 -181.92 -1.15 -11.02 16 29 C 0.11 3.44 6.32 86.86 0.55 3.99 16 30 H 0.26 15.93 8.31 -92.71 -0.77 15.16 16 31 H 0.36 16.53 5.53 -92.71 -0.51 16.02 16 32 H 0.03 1.08 7.96 -2.38 -0.02 1.06 16 33 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.09 1.52 8.04 -2.39 -0.02 1.50 16 35 H 0.11 1.50 8.14 -2.38 -0.02 1.48 16 36 H 0.08 1.46 7.53 -2.39 -0.02 1.45 16 37 H 0.08 1.47 7.41 -2.39 -0.02 1.45 16 38 H 0.16 2.68 7.63 -2.91 -0.02 2.66 16 39 H 0.19 0.59 8.06 -2.91 -0.02 0.57 16 40 H 0.17 1.92 7.68 -2.91 -0.02 1.90 16 41 H 0.19 2.14 7.81 -2.91 -0.02 2.12 16 42 H 0.18 0.86 8.06 -2.91 -0.02 0.83 16 43 H 0.23 0.61 8.06 -2.91 -0.02 0.59 16 44 H 0.05 1.98 8.04 -2.38 -0.02 1.96 16 45 H 0.07 2.22 7.91 -2.39 -0.02 2.20 16 Total: -1.00 -80.03 378.35 3.31 -76.71 By element: Atomic # 1 Polarization: 20.24 SS G_CDS: 0.45 Total: 20.68 kcal Atomic # 6 Polarization: 9.98 SS G_CDS: 7.83 Total: 17.82 kcal Atomic # 7 Polarization: -136.54 SS G_CDS: -6.80 Total: -143.35 kcal Atomic # 8 Polarization: -20.59 SS G_CDS: -0.06 Total: -20.66 kcal Atomic # 14 Polarization: 46.89 SS G_CDS: 1.90 Total: 48.79 kcal Total: -80.03 3.31 -76.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491833607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.223 kcal (2) G-P(sol) polarization free energy of solvation -80.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.715 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds