Wall clock time and date at job start Sat Apr 11 2020 06:19:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86801 * 120.00213 * 2 1 4 4 H 1.48498 * 109.47182 * 270.00779 * 3 2 1 5 5 H 1.48507 * 109.46785 * 30.00202 * 3 2 1 6 6 H 1.48496 * 109.47177 * 150.00469 * 3 2 1 7 7 C 1.38797 * 119.99928 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00345 * 359.97438 * 7 2 1 9 9 S 1.76200 * 120.00062 * 179.97438 * 7 2 1 10 10 C 1.81002 * 100.00284 * 179.97438 * 9 7 2 11 11 C 1.50694 * 109.47289 * 180.02562 * 10 9 7 12 12 O 1.21277 * 120.00261 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99966 * 180.02562 * 11 10 9 14 14 C 1.46496 * 119.99988 * 179.97438 * 13 11 10 15 15 C 1.53000 * 115.56386 * 180.10374 * 14 13 11 16 16 C 1.53117 * 109.52809 * 159.18441 * 15 14 13 17 17 C 1.53045 * 109.27869 * 182.50238 * 16 15 14 18 18 N 1.46848 * 109.57011 * 59.08413 * 17 16 15 19 19 C 1.46900 * 110.99722 * 174.19108 * 18 17 16 20 20 C 1.50700 * 109.47305 * 190.59787 * 19 18 17 21 21 N 1.34773 * 120.00040 * 186.27780 * 20 19 18 22 22 O 1.21277 * 119.99699 * 6.26775 * 20 19 18 23 23 C 1.46848 * 111.20063 * 298.28616 * 18 17 16 24 24 C 1.53041 * 109.52076 * 61.74673 * 23 18 17 25 25 C 1.53001 * 117.49965 * 34.41471 * 14 13 11 26 26 C 1.53003 * 60.03174 * 252.49601 * 25 14 13 27 27 H 0.97003 * 119.99818 * 359.97438 * 1 2 3 28 28 H 1.08996 * 109.46882 * 59.99843 * 10 9 7 29 29 H 1.08999 * 109.46788 * 300.00204 * 10 9 7 30 30 H 0.96996 * 120.00134 * 359.97438 * 13 11 10 31 31 H 1.09001 * 109.52350 * 279.30996 * 15 14 13 32 32 H 1.09004 * 109.50122 * 302.38145 * 16 15 14 33 33 H 1.09001 * 109.50120 * 62.49612 * 16 15 14 34 34 H 1.08998 * 109.40823 * 299.06749 * 17 16 15 35 35 H 1.09000 * 109.46054 * 179.12866 * 17 16 15 36 36 H 1.09002 * 109.47372 * 310.59833 * 19 18 17 37 37 H 1.09006 * 109.46831 * 70.59531 * 19 18 17 38 38 H 0.97004 * 120.00338 * 359.97438 * 21 20 19 39 39 H 0.97003 * 120.00362 * 180.02562 * 21 20 19 40 40 H 1.08999 * 109.46141 * 301.73230 * 23 18 17 41 41 H 1.08996 * 109.46261 * 181.76060 * 23 18 17 42 42 H 1.08998 * 109.50764 * 180.87932 * 24 23 18 43 43 H 1.09003 * 109.50605 * 60.76090 * 24 23 18 44 44 H 1.09000 * 117.49820 * 359.97438 * 25 14 13 45 45 H 1.09004 * 117.49941 * 144.99976 * 25 14 13 46 46 H 1.09000 * 117.49685 * 107.50034 * 26 25 14 47 47 H 1.08994 * 117.50002 * 252.52031 * 26 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5479 1.4401 0.6999 7 6 2.0102 -1.2020 -0.0005 8 1 1.4703 -2.1373 -0.0005 9 16 3.7722 -1.2021 -0.0012 10 6 4.0866 -2.9846 -0.0009 11 6 5.5730 -3.2326 -0.0008 12 8 6.3440 -2.2964 -0.0014 13 7 6.0456 -4.4947 -0.0011 14 6 7.4906 -4.7358 -0.0016 15 6 7.9147 -6.2059 -0.0044 16 6 9.3526 -6.3228 -0.5175 17 6 9.7494 -7.7997 -0.5771 18 7 8.8312 -8.5201 -1.4684 19 6 9.2642 -9.9110 -1.6574 20 6 8.4622 -10.5404 -2.7672 21 7 8.5975 -11.8543 -3.0349 22 8 7.6948 -9.8645 -3.4193 23 6 7.4514 -8.4617 -0.9691 24 6 6.9856 -7.0047 -0.9227 25 6 8.3719 -3.7478 0.7653 26 6 8.3727 -3.7445 -0.7647 27 1 -0.4850 0.8401 0.0004 28 1 3.6433 -3.4318 -0.8906 29 1 3.6440 -3.4314 0.8893 30 1 5.4290 -5.2435 -0.0011 31 1 7.8560 -6.6039 1.0086 32 1 9.4195 -5.8884 -1.5150 33 1 10.0240 -5.7915 0.1572 34 1 9.6966 -8.2295 0.4232 35 1 10.7674 -7.8872 -0.9566 36 1 10.3224 -9.9299 -1.9182 37 1 9.1075 -10.4690 -0.7342 38 1 9.2114 -12.3949 -2.5135 39 1 8.0815 -12.2594 -3.7495 40 1 7.4095 -8.8885 0.0330 41 1 6.8005 -9.0302 -1.6333 42 1 5.9669 -6.9604 -0.5373 43 1 7.0141 -6.5813 -1.9267 44 1 7.8766 -2.9183 1.2698 45 1 9.2536 -4.1452 1.2681 46 1 7.8779 -2.9129 -1.2664 47 1 9.2547 -4.1400 -1.2684 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571668004.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:44 Heat of formation + Delta-G solvation = -38.171219 kcal Electronic energy + Delta-G solvation = -27459.046564 eV Core-core repulsion = 23575.922943 eV Total energy + Delta-G solvation = -3883.123621 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.73140 -39.97878 -38.58572 -36.59889 -34.10755 -33.16094 -32.95107 -32.41506 -31.06069 -28.95599 -28.05855 -25.59617 -24.51403 -23.40631 -22.42957 -21.44644 -20.84498 -20.14123 -19.13462 -18.04322 -17.84496 -17.19662 -16.88371 -15.98844 -15.86874 -15.69298 -14.98186 -14.95574 -14.89860 -14.72579 -14.47550 -14.06837 -13.93229 -13.71965 -13.39506 -13.22358 -13.02898 -12.76629 -12.47012 -12.38064 -12.20484 -11.59756 -11.46375 -11.41730 -11.24027 -10.99903 -10.91769 -10.78859 -10.55950 -10.45840 -10.31737 -10.14581 -9.97745 -9.83236 -9.25330 -8.98142 -8.71952 -8.47578 -8.42928 -6.88808 -6.26675 -3.98033 2.23974 2.76805 2.87024 2.93697 3.29736 3.35675 3.52265 3.57458 3.66108 3.97405 4.30793 4.35151 4.37944 4.50525 4.62406 4.67987 4.70479 4.74942 4.90581 4.94509 5.01523 5.08865 5.12350 5.15676 5.27646 5.33335 5.40520 5.46415 5.55258 5.65265 5.72347 5.79474 5.82976 5.87917 5.96968 6.04327 6.17068 6.25560 6.31947 6.51577 6.53457 6.67640 6.75857 6.90369 7.68590 7.86981 7.96457 8.44196 8.54559 9.19506 10.82590 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.020655 B = 0.002146 C = 0.001992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.281836 B =13043.139163 C =14050.429290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.095 3.905 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.275 1.275 6 H -0.235 1.235 7 C -0.521 4.521 8 H 0.088 0.912 9 S -0.139 6.139 10 C -0.125 4.125 11 C 0.531 3.469 12 O -0.513 6.513 13 N -0.702 5.702 14 C 0.105 3.895 15 C -0.049 4.049 16 C -0.111 4.111 17 C 0.058 3.942 18 N -0.520 5.520 19 C 0.035 3.965 20 C 0.513 3.487 21 N -0.861 5.861 22 O -0.518 6.518 23 C 0.055 3.945 24 C -0.109 4.109 25 C -0.178 4.178 26 C -0.179 4.179 27 H 0.270 0.730 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.401 0.599 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.074 0.926 34 H 0.035 0.965 35 H 0.078 0.922 36 H 0.106 0.894 37 H 0.062 0.938 38 H 0.399 0.601 39 H 0.402 0.598 40 H 0.029 0.971 41 H 0.088 0.912 42 H 0.067 0.933 43 H 0.081 0.919 44 H 0.110 0.890 45 H 0.088 0.912 46 H 0.110 0.890 47 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.063 -26.226 -0.435 34.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.114 4.114 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.159 1.159 7 C -0.669 4.669 8 H 0.106 0.894 9 S 0.087 5.913 10 C -0.275 4.275 11 C 0.318 3.682 12 O -0.388 6.388 13 N -0.354 5.354 14 C 0.017 3.983 15 C -0.068 4.068 16 C -0.149 4.149 17 C -0.069 4.069 18 N -0.245 5.245 19 C -0.096 4.096 20 C 0.297 3.703 21 N -0.426 5.426 22 O -0.391 6.391 23 C -0.073 4.073 24 C -0.147 4.147 25 C -0.217 4.217 26 C -0.217 4.217 27 H 0.080 0.920 28 H 0.115 0.885 29 H 0.114 0.886 30 H 0.237 0.763 31 H 0.093 0.907 32 H 0.101 0.899 33 H 0.092 0.908 34 H 0.053 0.947 35 H 0.096 0.904 36 H 0.124 0.876 37 H 0.079 0.921 38 H 0.227 0.773 39 H 0.233 0.767 40 H 0.048 0.952 41 H 0.106 0.894 42 H 0.086 0.914 43 H 0.099 0.901 44 H 0.129 0.871 45 H 0.106 0.894 46 H 0.128 0.872 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 23.692 -23.706 -1.198 33.537 hybrid contribution -1.081 -1.625 0.753 2.092 sum 22.611 -25.331 -0.445 33.958 Atomic orbital electron populations 1.69941 1.05912 1.27731 1.48135 1.24718 0.94461 0.98970 0.93219 0.86725 0.81866 0.83267 0.79922 1.19215 1.19977 1.15945 1.22325 0.88342 0.97524 1.58684 0.89413 1.84750 1.09198 0.99956 1.97417 1.23294 0.94061 1.04428 1.05753 1.20260 0.90519 0.82208 0.75229 1.90649 1.58161 1.42481 1.47533 1.45343 1.05607 1.07997 1.76440 1.20598 0.79583 0.91479 1.06665 1.20745 0.95484 0.91002 0.99563 1.21756 0.95286 0.95062 1.02827 1.22126 0.96136 0.94474 0.94187 1.61582 1.02774 1.10961 1.49200 1.21945 1.00331 0.90630 0.96732 1.20594 0.82732 0.81955 0.85026 1.43899 1.48173 1.10347 1.40194 1.90785 1.36832 1.61522 1.49999 1.22208 0.89302 0.97916 0.97835 1.21572 0.98054 0.93937 1.01135 1.23419 1.00714 1.02217 0.95310 1.23573 1.01059 1.02062 0.95028 0.91967 0.88529 0.88573 0.76303 0.90703 0.89868 0.90776 0.94706 0.90397 0.87637 0.92057 0.77265 0.76694 0.95241 0.89362 0.91444 0.90058 0.87142 0.89357 0.87197 0.88618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.87 13.97 55.49 0.78 -26.09 16 2 C 0.09 2.81 5.50 -17.43 -0.10 2.71 16 3 Si 0.86 22.07 27.74 -169.99 -4.71 17.35 16 4 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.24 -6.04 6.74 56.52 0.38 -5.66 16 7 C -0.52 -15.20 10.04 30.94 0.31 -14.89 16 8 H 0.09 2.67 8.03 -52.49 -0.42 2.25 16 9 S -0.14 -3.57 18.55 -107.50 -1.99 -5.56 16 10 C -0.12 -2.46 6.16 36.00 0.22 -2.24 16 11 C 0.53 9.53 7.55 -10.99 -0.08 9.45 16 12 O -0.51 -10.71 11.34 5.56 0.06 -10.65 16 13 N -0.70 -9.52 5.39 -47.58 -0.26 -9.78 16 14 C 0.10 1.26 2.99 -131.78 -0.39 0.87 16 15 C -0.05 -0.44 2.55 -90.50 -0.23 -0.67 16 16 C -0.11 -0.86 4.08 -26.65 -0.11 -0.97 16 17 C 0.06 0.37 5.46 -3.83 -0.02 0.35 16 18 N -0.52 -4.13 4.35 -236.10 -1.03 -5.16 16 19 C 0.04 0.19 5.45 -4.98 -0.03 0.16 16 20 C 0.51 3.79 7.63 -10.99 -0.08 3.70 16 21 N -0.86 -2.89 8.87 31.22 0.28 -2.61 16 22 O -0.52 -6.46 15.55 5.56 0.09 -6.37 16 23 C 0.05 0.47 5.12 -3.83 -0.02 0.45 16 24 C -0.11 -1.02 4.94 -26.65 -0.13 -1.15 16 25 C -0.18 -2.32 9.08 -26.73 -0.24 -2.56 16 26 C -0.18 -2.37 8.85 -26.69 -0.24 -2.61 16 27 H 0.27 7.67 8.31 -40.82 -0.34 7.33 16 28 H 0.10 1.80 8.14 -51.92 -0.42 1.38 16 29 H 0.10 1.77 8.14 -51.92 -0.42 1.35 16 30 H 0.40 4.46 6.91 -40.82 -0.28 4.18 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.08 0.75 6.58 -51.93 -0.34 0.41 16 33 H 0.07 0.51 7.10 -51.93 -0.37 0.14 16 34 H 0.03 0.20 8.14 -51.93 -0.42 -0.22 16 35 H 0.08 0.40 8.01 -51.93 -0.42 -0.01 16 36 H 0.11 0.36 7.98 -51.93 -0.41 -0.06 16 37 H 0.06 0.21 8.12 -51.93 -0.42 -0.21 16 38 H 0.40 0.03 8.83 -40.82 -0.36 -0.33 16 39 H 0.40 1.24 8.93 -40.82 -0.36 0.88 16 40 H 0.03 0.22 8.14 -51.93 -0.42 -0.20 16 41 H 0.09 0.91 6.06 -51.93 -0.31 0.60 16 42 H 0.07 0.58 6.61 -51.93 -0.34 0.24 16 43 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 44 H 0.11 1.80 6.38 -51.93 -0.33 1.47 16 45 H 0.09 0.92 7.33 -51.93 -0.38 0.54 16 46 H 0.11 1.84 6.37 -51.93 -0.33 1.50 16 47 H 0.10 1.05 5.84 -51.93 -0.30 0.74 16 LS Contribution 378.33 15.07 5.70 5.70 Total: -1.00 -37.00 378.33 -9.32 -46.32 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -7.09 Total: 4.24 kcal Atomic # 6 Polarization: -6.25 SS G_CDS: -1.14 Total: -7.39 kcal Atomic # 7 Polarization: -43.41 SS G_CDS: -0.23 Total: -43.64 kcal Atomic # 8 Polarization: -17.17 SS G_CDS: 0.15 Total: -17.02 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.71 Total: 17.35 kcal Atomic # 16 Polarization: -3.57 SS G_CDS: -1.99 Total: -5.56 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -37.00 -9.32 -46.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571668004.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.144 kcal (2) G-P(sol) polarization free energy of solvation -36.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds