Wall clock time and date at job start Sat Apr 11 2020 06:19:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86801 * 120.00213 * 2 1 4 4 H 1.48498 * 109.47182 * 270.00779 * 3 2 1 5 5 H 1.48507 * 109.46785 * 30.00202 * 3 2 1 6 6 H 1.48496 * 109.47177 * 150.00469 * 3 2 1 7 7 C 1.38797 * 119.99928 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00345 * 359.97438 * 7 2 1 9 9 S 1.76200 * 120.00062 * 179.97438 * 7 2 1 10 10 C 1.81002 * 100.00284 * 179.97438 * 9 7 2 11 11 C 1.50694 * 109.47289 * 180.02562 * 10 9 7 12 12 O 1.21277 * 120.00261 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99966 * 180.02562 * 11 10 9 14 14 C 1.46496 * 119.99988 * 179.97438 * 13 11 10 15 15 C 1.53000 * 115.56386 * 180.10374 * 14 13 11 16 16 C 1.53117 * 109.52809 * 159.18441 * 15 14 13 17 17 C 1.53045 * 109.27869 * 182.50238 * 16 15 14 18 18 N 1.46848 * 109.57011 * 59.08413 * 17 16 15 19 19 C 1.46900 * 110.99722 * 174.19108 * 18 17 16 20 20 C 1.50700 * 109.47305 * 190.59787 * 19 18 17 21 21 N 1.34773 * 120.00040 * 186.27780 * 20 19 18 22 22 O 1.21277 * 119.99699 * 6.26775 * 20 19 18 23 23 C 1.46848 * 111.20063 * 298.28616 * 18 17 16 24 24 C 1.53041 * 109.52076 * 61.74673 * 23 18 17 25 25 C 1.53001 * 117.49965 * 34.41471 * 14 13 11 26 26 C 1.53003 * 60.03174 * 252.49601 * 25 14 13 27 27 H 0.97003 * 119.99818 * 359.97438 * 1 2 3 28 28 H 1.08996 * 109.46882 * 59.99843 * 10 9 7 29 29 H 1.08999 * 109.46788 * 300.00204 * 10 9 7 30 30 H 0.96996 * 120.00134 * 359.97438 * 13 11 10 31 31 H 1.09001 * 109.52350 * 279.30996 * 15 14 13 32 32 H 1.09004 * 109.50122 * 302.38145 * 16 15 14 33 33 H 1.09001 * 109.50120 * 62.49612 * 16 15 14 34 34 H 1.08998 * 109.40823 * 299.06749 * 17 16 15 35 35 H 1.09000 * 109.46054 * 179.12866 * 17 16 15 36 36 H 1.09002 * 109.47372 * 310.59833 * 19 18 17 37 37 H 1.09006 * 109.46831 * 70.59531 * 19 18 17 38 38 H 0.97004 * 120.00338 * 359.97438 * 21 20 19 39 39 H 0.97003 * 120.00362 * 180.02562 * 21 20 19 40 40 H 1.08999 * 109.46141 * 301.73230 * 23 18 17 41 41 H 1.08996 * 109.46261 * 181.76060 * 23 18 17 42 42 H 1.08998 * 109.50764 * 180.87932 * 24 23 18 43 43 H 1.09003 * 109.50605 * 60.76090 * 24 23 18 44 44 H 1.09000 * 117.49820 * 359.97438 * 25 14 13 45 45 H 1.09004 * 117.49941 * 144.99976 * 25 14 13 46 46 H 1.09000 * 117.49685 * 107.50034 * 26 25 14 47 47 H 1.08994 * 117.50002 * 252.52031 * 26 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5479 1.4401 0.6999 7 6 2.0102 -1.2020 -0.0005 8 1 1.4703 -2.1373 -0.0005 9 16 3.7722 -1.2021 -0.0012 10 6 4.0866 -2.9846 -0.0009 11 6 5.5730 -3.2326 -0.0008 12 8 6.3440 -2.2964 -0.0014 13 7 6.0456 -4.4947 -0.0011 14 6 7.4906 -4.7358 -0.0016 15 6 7.9147 -6.2059 -0.0044 16 6 9.3526 -6.3228 -0.5175 17 6 9.7494 -7.7997 -0.5771 18 7 8.8312 -8.5201 -1.4684 19 6 9.2642 -9.9110 -1.6574 20 6 8.4622 -10.5404 -2.7672 21 7 8.5975 -11.8543 -3.0349 22 8 7.6948 -9.8645 -3.4193 23 6 7.4514 -8.4617 -0.9691 24 6 6.9856 -7.0047 -0.9227 25 6 8.3719 -3.7478 0.7653 26 6 8.3727 -3.7445 -0.7647 27 1 -0.4850 0.8401 0.0004 28 1 3.6433 -3.4318 -0.8906 29 1 3.6440 -3.4314 0.8893 30 1 5.4290 -5.2435 -0.0011 31 1 7.8560 -6.6039 1.0086 32 1 9.4195 -5.8884 -1.5150 33 1 10.0240 -5.7915 0.1572 34 1 9.6966 -8.2295 0.4232 35 1 10.7674 -7.8872 -0.9566 36 1 10.3224 -9.9299 -1.9182 37 1 9.1075 -10.4690 -0.7342 38 1 9.2114 -12.3949 -2.5135 39 1 8.0815 -12.2594 -3.7495 40 1 7.4095 -8.8885 0.0330 41 1 6.8005 -9.0302 -1.6333 42 1 5.9669 -6.9604 -0.5373 43 1 7.0141 -6.5813 -1.9267 44 1 7.8766 -2.9183 1.2698 45 1 9.2536 -4.1452 1.2681 46 1 7.8779 -2.9129 -1.2664 47 1 9.2547 -4.1400 -1.2684 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571668004.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:44 Heat of formation + Delta-G solvation = -68.473006 kcal Electronic energy + Delta-G solvation = -27460.360548 eV Core-core repulsion = 23575.922943 eV Total energy + Delta-G solvation = -3884.437605 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.71174 -40.72125 -39.46146 -37.56880 -34.69614 -34.60293 -34.40995 -33.65200 -31.74253 -30.45310 -28.59812 -27.87276 -25.26670 -24.01363 -23.44173 -22.47064 -21.44609 -21.09747 -20.09654 -19.89598 -18.43262 -18.16321 -17.68818 -17.19699 -17.09711 -16.48207 -16.39822 -16.35931 -15.83328 -15.57092 -15.37230 -15.25615 -15.01492 -14.82592 -14.57585 -14.42211 -14.01819 -13.89456 -13.81045 -13.35691 -13.04523 -12.98618 -12.82412 -12.67271 -12.42577 -12.37164 -12.17249 -11.88250 -11.79409 -11.44759 -11.33109 -11.18769 -11.11286 -10.79301 -10.68762 -10.55955 -10.53199 -9.60894 -9.18299 -9.00713 -8.53172 -6.23916 0.96029 1.30105 1.44623 1.49828 1.53393 1.74157 2.15075 2.23901 2.48932 2.68998 2.84816 2.95955 3.11937 3.53325 3.61146 3.80413 3.94108 4.07275 4.12972 4.17944 4.22944 4.27511 4.33077 4.42264 4.43346 4.44976 4.55714 4.62038 4.68458 4.74865 4.82394 4.91070 5.02181 5.04540 5.09186 5.22395 5.28560 5.41716 5.48788 5.58838 5.69048 5.95018 6.06922 6.09605 6.18718 6.45958 6.60125 6.91692 7.18362 7.47010 8.59351 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.020655 B = 0.002146 C = 0.001992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.281836 B =13043.139163 C =14050.429290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.044 3.956 3 Si 0.916 3.084 4 H -0.263 1.263 5 H -0.258 1.258 6 H -0.237 1.237 7 C -0.531 4.531 8 H 0.061 0.939 9 S -0.169 6.169 10 C -0.113 4.113 11 C 0.534 3.466 12 O -0.545 6.545 13 N -0.684 5.684 14 C 0.108 3.892 15 C -0.037 4.037 16 C -0.111 4.111 17 C 0.062 3.938 18 N -0.544 5.544 19 C 0.037 3.963 20 C 0.507 3.493 21 N -0.842 5.842 22 O -0.580 6.580 23 C 0.062 3.938 24 C -0.108 4.108 25 C -0.175 4.175 26 C -0.186 4.186 27 H 0.277 0.723 28 H 0.108 0.892 29 H 0.112 0.888 30 H 0.415 0.585 31 H 0.092 0.908 32 H 0.066 0.934 33 H 0.089 0.911 34 H 0.051 0.949 35 H 0.095 0.905 36 H 0.130 0.870 37 H 0.088 0.912 38 H 0.418 0.582 39 H 0.404 0.596 40 H 0.046 0.954 41 H 0.066 0.934 42 H 0.070 0.930 43 H 0.053 0.947 44 H 0.075 0.925 45 H 0.122 0.878 46 H 0.071 0.929 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.882 -28.362 0.677 38.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.161 4.161 3 Si 0.738 3.262 4 H -0.188 1.188 5 H -0.182 1.182 6 H -0.161 1.161 7 C -0.678 4.678 8 H 0.079 0.921 9 S 0.058 5.942 10 C -0.264 4.264 11 C 0.319 3.681 12 O -0.423 6.423 13 N -0.336 5.336 14 C 0.020 3.980 15 C -0.056 4.056 16 C -0.148 4.148 17 C -0.065 4.065 18 N -0.270 5.270 19 C -0.094 4.094 20 C 0.292 3.708 21 N -0.407 5.407 22 O -0.459 6.459 23 C -0.066 4.066 24 C -0.146 4.146 25 C -0.214 4.214 26 C -0.224 4.224 27 H 0.087 0.913 28 H 0.126 0.874 29 H 0.130 0.870 30 H 0.253 0.747 31 H 0.111 0.889 32 H 0.085 0.915 33 H 0.107 0.893 34 H 0.069 0.931 35 H 0.113 0.887 36 H 0.148 0.852 37 H 0.106 0.894 38 H 0.249 0.751 39 H 0.235 0.765 40 H 0.064 0.936 41 H 0.084 0.916 42 H 0.089 0.911 43 H 0.072 0.928 44 H 0.094 0.906 45 H 0.140 0.860 46 H 0.090 0.910 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 26.538 -25.937 -0.067 37.108 hybrid contribution -1.924 -1.162 0.367 2.277 sum 24.615 -27.099 0.300 36.610 Atomic orbital electron populations 1.70018 1.07297 1.29041 1.49086 1.25584 0.95319 1.02310 0.92882 0.85844 0.80655 0.79518 0.80189 1.18773 1.18174 1.16068 1.22471 0.90364 0.96672 1.58324 0.92115 1.84639 1.06287 1.05710 1.97563 1.23283 0.96047 0.99927 1.07129 1.19921 0.89344 0.83291 0.75519 1.90659 1.58468 1.43799 1.49355 1.45179 1.07065 1.06855 1.74513 1.20963 0.78058 0.93300 1.05649 1.20755 0.96251 0.88176 1.00418 1.21761 0.94398 0.96582 1.02105 1.22140 0.96433 0.93040 0.94889 1.61499 1.02562 1.12859 1.50052 1.22047 1.00995 0.89440 0.96900 1.21103 0.82098 0.82641 0.84975 1.43770 1.47682 1.09404 1.39834 1.90765 1.39624 1.63145 1.52317 1.22037 0.89804 0.96647 0.98083 1.21529 0.98609 0.94776 0.99676 1.23366 1.01744 1.01413 0.94839 1.23505 1.02143 1.01487 0.95307 0.91339 0.87373 0.87010 0.74662 0.88943 0.91521 0.89307 0.93054 0.88708 0.85239 0.89423 0.75090 0.76489 0.93610 0.91601 0.91106 0.92819 0.90619 0.86045 0.91046 0.86141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.73 13.97 21.65 0.30 -56.43 16 2 C 0.04 2.66 5.50 84.86 0.47 3.13 16 3 Si 0.92 45.90 27.74 68.60 1.90 47.80 16 4 H -0.26 -12.90 7.11 99.48 0.71 -12.19 16 5 H -0.26 -12.05 7.11 99.48 0.71 -11.34 16 6 H -0.24 -11.83 6.74 99.48 0.67 -11.16 16 7 C -0.53 -31.61 10.04 67.95 0.68 -30.92 16 8 H 0.06 3.82 8.03 -2.91 -0.02 3.80 16 9 S -0.17 -8.71 18.55 -56.49 -1.05 -9.76 16 10 C -0.11 -4.45 6.16 71.23 0.44 -4.01 16 11 C 0.53 19.10 7.55 87.65 0.66 19.76 16 12 O -0.55 -23.14 11.34 -3.02 -0.03 -23.18 16 13 N -0.68 -17.95 5.39 -422.82 -2.28 -20.23 16 14 C 0.11 2.44 2.99 3.63 0.01 2.45 16 15 C -0.04 -0.57 2.55 -10.71 -0.03 -0.60 16 16 C -0.11 -1.37 4.08 30.65 0.12 -1.24 16 17 C 0.06 0.55 5.46 86.33 0.47 1.02 16 18 N -0.54 -7.28 4.35 -900.90 -3.92 -11.20 16 19 C 0.04 0.28 5.45 85.56 0.47 0.74 16 20 C 0.51 6.75 7.63 87.66 0.67 7.42 16 21 N -0.84 -4.02 8.87 -173.54 -1.54 -5.56 16 22 O -0.58 -14.63 15.55 -3.02 -0.05 -14.67 16 23 C 0.06 0.96 5.12 86.33 0.44 1.41 16 24 C -0.11 -1.88 4.94 30.65 0.15 -1.73 16 25 C -0.18 -4.32 9.08 30.60 0.28 -4.04 16 26 C -0.19 -4.83 8.85 30.62 0.27 -4.56 16 27 H 0.28 15.84 8.31 -92.71 -0.77 15.07 16 28 H 0.11 4.01 8.14 -2.40 -0.02 3.99 16 29 H 0.11 4.06 8.14 -2.40 -0.02 4.04 16 30 H 0.42 8.63 6.91 -92.71 -0.64 7.99 16 31 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.07 1.07 6.58 -2.39 -0.02 1.06 16 33 H 0.09 0.86 7.10 -2.39 -0.02 0.84 16 34 H 0.05 0.32 8.14 -2.39 -0.02 0.30 16 35 H 0.09 0.56 8.01 -2.39 -0.02 0.54 16 36 H 0.13 0.35 7.98 -2.39 -0.02 0.33 16 37 H 0.09 0.23 8.12 -2.38 -0.02 0.21 16 38 H 0.42 -1.14 8.83 -92.71 -0.82 -1.96 16 39 H 0.40 1.97 8.93 -92.71 -0.83 1.14 16 40 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 41 H 0.07 1.35 6.06 -2.39 -0.01 1.33 16 42 H 0.07 1.13 6.61 -2.39 -0.02 1.11 16 43 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 44 H 0.08 2.47 6.38 -2.39 -0.02 2.45 16 45 H 0.12 2.15 7.33 -2.39 -0.02 2.13 16 46 H 0.07 2.46 6.37 -2.39 -0.02 2.45 16 47 H 0.12 2.47 5.84 -2.39 -0.01 2.46 16 Total: -1.00 -84.04 378.33 -2.85 -86.89 By element: Atomic # 1 Polarization: 18.80 SS G_CDS: -1.30 Total: 17.50 kcal Atomic # 6 Polarization: -16.27 SS G_CDS: 5.11 Total: -11.16 kcal Atomic # 7 Polarization: -85.99 SS G_CDS: -7.43 Total: -93.42 kcal Atomic # 8 Polarization: -37.77 SS G_CDS: -0.08 Total: -37.85 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 1.90 Total: 47.80 kcal Atomic # 16 Polarization: -8.71 SS G_CDS: -1.05 Total: -9.76 kcal Total: -84.04 -2.85 -86.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571668004.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.414 kcal (2) G-P(sol) polarization free energy of solvation -84.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds