Wall clock time and date at job start Sat Apr 11 2020 06:19:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86800 * 119.99764 * 2 1 4 4 H 1.48507 * 109.46928 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47454 * 300.00107 * 3 2 1 6 6 H 1.48497 * 109.47372 * 60.00233 * 3 2 1 7 7 C 1.38947 * 119.99953 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99743 * 183.14242 * 7 2 1 9 9 N 1.37094 * 120.00335 * 3.13482 * 7 2 1 10 10 C 1.46505 * 119.99868 * 308.21722 * 9 7 2 11 11 C 1.53003 * 109.46996 * 274.45228 * 10 9 7 12 12 C 1.50696 * 109.46907 * 180.02562 * 11 10 9 13 13 O 1.20827 * 120.00095 * 0.02562 * 12 11 10 14 14 O 1.34231 * 119.99724 * 180.02562 * 12 11 10 15 15 C 1.34774 * 120.00169 * 128.21214 * 9 7 2 16 16 O 1.21288 * 120.00151 * 184.63356 * 15 9 7 17 17 C 1.50706 * 119.99786 * 4.63987 * 15 9 7 18 18 C 1.52999 * 109.82412 * 153.72362 * 17 15 9 19 19 H 1.08999 * 109.48194 * 185.56618 * 18 17 15 20 20 C 1.53099 * 109.48887 * 305.59616 * 18 17 15 21 21 C 1.53177 * 109.15872 * 177.59639 * 20 18 17 22 22 C 1.53179 * 109.03960 * 303.01448 * 21 20 18 23 23 C 1.53095 * 109.15757 * 56.98452 * 22 21 20 24 24 O 1.42897 * 109.41528 * 302.39116 * 23 22 21 25 25 C 1.54388 * 109.90277 * 274.65580 * 17 15 9 26 26 C 1.55300 * 102.24870 * 98.20149 * 25 17 15 27 27 C 1.54947 * 100.94873 * 34.13303 * 26 25 17 28 28 O 1.43238 * 109.82931 * 32.83438 * 17 15 9 29 29 H 0.96995 * 119.99955 * 359.97438 * 1 2 3 30 30 H 1.08994 * 109.46834 * 34.45138 * 10 9 7 31 31 H 1.08994 * 109.46697 * 154.45530 * 10 9 7 32 32 H 1.08997 * 109.47010 * 300.00123 * 11 10 9 33 33 H 1.08998 * 109.46885 * 60.00148 * 11 10 9 34 34 H 0.96703 * 116.99454 * 180.02562 * 14 12 11 35 35 H 1.08997 * 109.51785 * 297.50151 * 20 18 17 36 36 H 1.08993 * 109.52296 * 57.69439 * 20 18 17 37 37 H 1.09008 * 109.53666 * 183.14911 * 21 20 18 38 38 H 1.09001 * 109.54640 * 62.89095 * 21 20 18 39 39 H 1.08993 * 109.52138 * 297.07733 * 22 21 20 40 40 H 1.09000 * 109.57423 * 176.92186 * 22 21 20 41 41 H 1.09001 * 109.47154 * 182.41006 * 23 22 21 42 42 H 1.08994 * 109.48692 * 62.38321 * 23 22 21 43 43 H 1.09001 * 110.84456 * 216.39097 * 25 17 15 44 44 H 1.08995 * 110.84740 * 340.01197 * 25 17 15 45 45 H 1.09005 * 111.12834 * 276.21155 * 26 25 17 46 46 H 1.09006 * 111.12217 * 152.05159 * 26 25 17 47 47 H 1.08994 * 110.31266 * 204.64317 * 27 26 25 48 48 H 1.09000 * 110.30942 * 82.46488 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3464 -0.0006 5 1 1.8893 2.3965 -1.2125 6 1 1.8894 2.3965 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0877 -1.2040 0.0507 9 7 1.3250 -2.3897 -0.0660 10 6 0.2331 -2.6586 0.8731 11 6 0.8051 -3.2422 2.1666 12 6 -0.3181 -3.5193 3.1323 13 8 -1.4591 -3.2755 2.8181 14 8 -0.0511 -4.0370 4.3416 15 6 1.6571 -3.3086 -0.9943 16 8 0.9993 -4.3213 -1.1076 17 6 2.8458 -3.0779 -1.8914 18 6 3.4108 -4.4204 -2.3597 19 1 4.3267 -4.2517 -2.9260 20 6 3.7169 -5.2980 -1.1432 21 6 4.2253 -6.6614 -1.6220 22 6 3.1756 -7.2906 -2.5432 23 6 2.8904 -6.3360 -3.7056 24 8 2.4513 -5.0777 -3.1901 25 6 2.4262 -2.2316 -3.1126 26 6 2.8674 -0.8035 -2.6911 27 6 4.1442 -1.1197 -1.8721 28 8 3.8539 -2.3467 -1.1838 29 1 -0.4850 0.8400 0.0004 30 1 -0.2924 -1.7297 1.0948 31 1 -0.4610 -3.3717 0.4285 32 1 1.3306 -4.1710 1.9449 33 1 1.4993 -2.5291 2.6111 34 1 -0.8043 -4.1978 4.9264 35 1 4.4811 -4.8187 -0.5314 36 1 2.8098 -5.4338 -0.5544 37 1 4.3922 -7.3106 -0.7624 38 1 5.1592 -6.5309 -2.1687 39 1 2.2576 -7.4666 -1.9827 40 1 3.5517 -8.2367 -2.9327 41 1 2.1129 -6.7597 -4.3414 42 1 3.7994 -6.1924 -4.2896 43 1 2.9575 -2.5533 -4.0084 44 1 1.3476 -2.2758 -3.2630 45 1 2.1102 -0.3258 -2.0693 46 1 3.1011 -0.1914 -3.5623 47 1 4.3417 -0.3219 -1.1562 48 1 4.9974 -1.2518 -2.5375 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601072722.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:47 Heat of formation + Delta-G solvation = -199.929531 kcal Electronic energy + Delta-G solvation = -33541.113656 eV Core-core repulsion = 29175.930046 eV Total energy + Delta-G solvation = -4365.183610 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.176 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.37250 -39.69920 -38.35120 -37.30889 -35.73988 -34.89266 -33.29141 -32.02094 -31.58794 -31.24910 -30.38270 -28.18062 -25.22395 -24.53237 -24.01770 -23.31494 -21.59735 -21.11615 -20.12243 -19.88591 -18.97429 -17.80198 -17.48068 -16.31199 -15.99305 -15.83933 -15.62018 -15.40488 -15.00903 -14.75218 -14.45598 -14.21528 -14.09481 -13.76114 -13.61310 -13.36494 -12.90159 -12.72805 -12.57859 -12.40606 -12.34606 -12.24912 -11.62934 -11.46586 -11.19402 -11.10404 -11.06627 -11.04174 -10.92280 -10.85673 -10.66777 -10.52918 -10.24957 -10.24090 -10.11845 -10.04354 -9.90134 -9.82717 -9.32238 -8.99535 -8.81701 -8.10771 -7.27096 -6.25785 -4.14551 2.73379 3.05897 3.14919 3.18930 3.42496 3.64404 4.03400 4.22592 4.71433 4.81632 4.95767 4.98436 5.09164 5.18417 5.25085 5.33728 5.46718 5.55427 5.65197 5.68446 5.71032 5.72161 5.85426 5.89068 5.94367 6.00308 6.07083 6.11598 6.20121 6.25584 6.31421 6.35044 6.39807 6.41697 6.46037 6.49176 6.65515 6.80318 6.88094 6.99936 7.09314 7.42955 7.55682 7.68589 7.76091 8.11826 8.37024 8.54467 9.10872 9.52729 9.98301 10.72087 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.009078 B = 0.006240 C = 0.004177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3083.572271 B = 4485.777820 C = 6702.543084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.040 3.960 3 Si 0.895 3.105 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.282 1.282 7 C -0.336 4.336 8 H 0.117 0.883 9 N -0.436 5.436 10 C 0.118 3.882 11 C -0.121 4.121 12 C 0.482 3.518 13 O -0.514 6.514 14 O -0.526 6.526 15 C 0.492 3.508 16 O -0.573 6.573 17 C 0.121 3.879 18 C 0.110 3.890 19 H 0.053 0.947 20 C -0.152 4.152 21 C -0.117 4.117 22 C -0.154 4.154 23 C 0.064 3.936 24 O -0.351 6.351 25 C -0.116 4.116 26 C -0.164 4.164 27 C 0.059 3.941 28 O -0.346 6.346 29 H 0.268 0.732 30 H 0.119 0.881 31 H 0.063 0.937 32 H 0.091 0.909 33 H 0.105 0.895 34 H 0.400 0.600 35 H 0.071 0.929 36 H 0.088 0.912 37 H 0.061 0.939 38 H 0.055 0.945 39 H 0.074 0.926 40 H 0.063 0.937 41 H 0.088 0.912 42 H 0.040 0.960 43 H 0.068 0.932 44 H 0.081 0.919 45 H 0.116 0.884 46 H 0.063 0.937 47 H 0.085 0.915 48 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.242 -5.691 -2.073 10.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.164 4.164 3 Si 0.722 3.278 4 H -0.186 1.186 5 H -0.203 1.203 6 H -0.208 1.208 7 C -0.464 4.464 8 H 0.134 0.866 9 N -0.154 5.154 10 C -0.005 4.005 11 C -0.160 4.160 12 C 0.324 3.676 13 O -0.402 6.402 14 O -0.338 6.338 15 C 0.279 3.721 16 O -0.457 6.457 17 C 0.078 3.922 18 C 0.051 3.949 19 H 0.071 0.929 20 C -0.189 4.189 21 C -0.155 4.155 22 C -0.192 4.192 23 C -0.013 4.013 24 O -0.270 6.270 25 C -0.154 4.154 26 C -0.201 4.201 27 C -0.017 4.017 28 O -0.265 6.265 29 H 0.079 0.921 30 H 0.137 0.863 31 H 0.081 0.919 32 H 0.109 0.891 33 H 0.123 0.877 34 H 0.257 0.743 35 H 0.090 0.910 36 H 0.106 0.894 37 H 0.080 0.920 38 H 0.074 0.926 39 H 0.093 0.907 40 H 0.082 0.918 41 H 0.106 0.894 42 H 0.058 0.942 43 H 0.087 0.913 44 H 0.100 0.900 45 H 0.135 0.865 46 H 0.081 0.919 47 H 0.103 0.897 48 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 7.672 -5.880 -2.322 9.941 hybrid contribution 0.093 0.805 0.381 0.895 sum 7.765 -5.075 -1.941 9.477 Atomic orbital electron populations 1.69743 1.05960 1.27268 1.47399 1.25723 0.95265 0.99522 0.95939 0.86428 0.80286 0.82849 0.78261 1.18606 1.20314 1.20758 1.20329 0.93200 0.81556 1.51356 0.86575 1.43245 1.30912 1.15280 1.26004 1.21331 0.90398 1.02893 0.85918 1.21852 0.95444 1.03533 0.95127 1.23877 0.90956 0.72321 0.80427 1.90699 1.23970 1.48761 1.76732 1.84602 1.44308 1.76863 1.27979 1.20375 0.85897 0.84534 0.81288 1.90581 1.54508 1.29802 1.70785 1.21826 0.87526 0.90599 0.92251 1.21959 0.90514 0.91377 0.91051 0.92922 1.22244 1.03059 0.94928 0.98697 1.21544 0.97723 0.97069 0.99127 1.22157 1.00380 0.98431 0.98226 1.22459 0.99200 0.84956 0.94683 1.88062 1.40956 1.32280 1.65666 1.22759 1.02813 0.94015 0.95828 1.23634 0.99511 0.97047 0.99956 1.23238 0.95985 0.87244 0.95268 1.88427 1.57414 1.32623 1.48069 0.92142 0.86291 0.91875 0.89110 0.87693 0.74282 0.91019 0.89361 0.91995 0.92609 0.90720 0.91831 0.89385 0.94204 0.91327 0.90027 0.86547 0.91871 0.89673 0.93795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.31 11.16 55.50 0.62 -21.69 16 2 C 0.04 0.96 4.15 -17.47 -0.07 0.89 16 3 Si 0.90 18.32 27.55 -169.99 -4.68 13.64 16 4 H -0.26 -4.99 6.30 56.52 0.36 -4.64 16 5 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 6 H -0.28 -5.94 7.11 56.52 0.40 -5.53 16 7 C -0.34 -7.86 5.60 -14.94 -0.08 -7.94 16 8 H 0.12 2.66 4.07 -52.48 -0.21 2.45 16 9 N -0.44 -10.46 2.47 -114.81 -0.28 -10.75 16 10 C 0.12 2.83 4.42 -4.04 -0.02 2.81 16 11 C -0.12 -2.40 6.12 -27.88 -0.17 -2.57 16 12 C 0.48 9.04 8.33 36.00 0.30 9.34 16 13 O -0.51 -11.21 16.74 -18.75 -0.31 -11.52 16 14 O -0.53 -7.72 13.42 -39.26 -0.53 -8.24 16 15 C 0.49 11.60 5.58 -10.98 -0.06 11.54 16 16 O -0.57 -14.69 13.47 -13.23 -0.18 -14.87 16 17 C 0.12 2.43 0.56 -91.04 -0.05 2.38 16 18 C 0.11 1.97 1.89 -26.68 -0.05 1.92 16 19 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 20 C -0.15 -2.61 4.97 -26.59 -0.13 -2.74 16 21 C -0.12 -1.61 6.03 -26.55 -0.16 -1.77 16 22 C -0.15 -2.07 6.14 -26.59 -0.16 -2.23 16 23 C 0.06 0.91 6.84 37.21 0.25 1.17 16 24 O -0.35 -6.54 8.75 -54.01 -0.47 -7.01 16 25 C -0.12 -2.19 5.63 -24.78 -0.14 -2.33 16 26 C -0.16 -2.96 6.36 -24.48 -0.16 -3.12 16 27 C 0.06 1.01 6.56 38.19 0.25 1.26 16 28 O -0.35 -6.77 7.83 -35.23 -0.28 -7.04 16 29 H 0.27 6.63 8.31 -40.82 -0.34 6.29 16 30 H 0.12 3.12 5.61 -51.93 -0.29 2.83 16 31 H 0.06 1.63 7.20 -51.93 -0.37 1.26 16 32 H 0.09 1.76 8.14 -51.93 -0.42 1.33 16 33 H 0.10 2.02 8.14 -51.93 -0.42 1.60 16 34 H 0.40 3.93 9.10 45.56 0.41 4.35 16 35 H 0.07 1.21 7.95 -51.93 -0.41 0.79 16 36 H 0.09 1.79 6.03 -51.93 -0.31 1.47 16 37 H 0.06 0.78 8.14 -51.92 -0.42 0.36 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.07 1.13 7.85 -51.93 -0.41 0.73 16 44 H 0.08 1.72 7.82 -51.93 -0.41 1.32 16 45 H 0.12 2.45 3.69 -51.93 -0.19 2.25 16 46 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 47 H 0.09 1.46 5.90 -51.93 -0.31 1.16 16 48 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 364.17 15.07 5.49 5.49 Total: -1.00 -30.06 364.17 -7.41 -37.47 By element: Atomic # 1 Polarization: 22.26 SS G_CDS: -6.33 Total: 15.93 kcal Atomic # 6 Polarization: 9.05 SS G_CDS: -0.45 Total: 8.60 kcal Atomic # 7 Polarization: -32.78 SS G_CDS: 0.34 Total: -32.44 kcal Atomic # 8 Polarization: -46.92 SS G_CDS: -1.77 Total: -48.69 kcal Atomic # 14 Polarization: 18.32 SS G_CDS: -4.68 Total: 13.64 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.06 -7.41 -37.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601072722.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -162.459 kcal (2) G-P(sol) polarization free energy of solvation -30.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds