Wall clock time and date at job start Sat Apr 11 2020 06:19:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86800 * 119.99764 * 2 1 4 4 H 1.48507 * 109.46928 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47454 * 300.00107 * 3 2 1 6 6 H 1.48497 * 109.47372 * 60.00233 * 3 2 1 7 7 C 1.38947 * 119.99953 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99743 * 183.14242 * 7 2 1 9 9 N 1.37094 * 120.00335 * 3.13482 * 7 2 1 10 10 C 1.46505 * 119.99868 * 308.21722 * 9 7 2 11 11 C 1.53003 * 109.46996 * 274.45228 * 10 9 7 12 12 C 1.50696 * 109.46907 * 180.02562 * 11 10 9 13 13 O 1.20827 * 120.00095 * 0.02562 * 12 11 10 14 14 O 1.34231 * 119.99724 * 180.02562 * 12 11 10 15 15 C 1.34774 * 120.00169 * 128.21214 * 9 7 2 16 16 O 1.21288 * 120.00151 * 184.63356 * 15 9 7 17 17 C 1.50706 * 119.99786 * 4.63987 * 15 9 7 18 18 C 1.52999 * 109.82412 * 153.72362 * 17 15 9 19 19 H 1.08999 * 109.48194 * 185.56618 * 18 17 15 20 20 C 1.53099 * 109.48887 * 305.59616 * 18 17 15 21 21 C 1.53177 * 109.15872 * 177.59639 * 20 18 17 22 22 C 1.53179 * 109.03960 * 303.01448 * 21 20 18 23 23 C 1.53095 * 109.15757 * 56.98452 * 22 21 20 24 24 O 1.42897 * 109.41528 * 302.39116 * 23 22 21 25 25 C 1.54388 * 109.90277 * 274.65580 * 17 15 9 26 26 C 1.55300 * 102.24870 * 98.20149 * 25 17 15 27 27 C 1.54947 * 100.94873 * 34.13303 * 26 25 17 28 28 O 1.43238 * 109.82931 * 32.83438 * 17 15 9 29 29 H 0.96995 * 119.99955 * 359.97438 * 1 2 3 30 30 H 1.08994 * 109.46834 * 34.45138 * 10 9 7 31 31 H 1.08994 * 109.46697 * 154.45530 * 10 9 7 32 32 H 1.08997 * 109.47010 * 300.00123 * 11 10 9 33 33 H 1.08998 * 109.46885 * 60.00148 * 11 10 9 34 34 H 0.96703 * 116.99454 * 180.02562 * 14 12 11 35 35 H 1.08997 * 109.51785 * 297.50151 * 20 18 17 36 36 H 1.08993 * 109.52296 * 57.69439 * 20 18 17 37 37 H 1.09008 * 109.53666 * 183.14911 * 21 20 18 38 38 H 1.09001 * 109.54640 * 62.89095 * 21 20 18 39 39 H 1.08993 * 109.52138 * 297.07733 * 22 21 20 40 40 H 1.09000 * 109.57423 * 176.92186 * 22 21 20 41 41 H 1.09001 * 109.47154 * 182.41006 * 23 22 21 42 42 H 1.08994 * 109.48692 * 62.38321 * 23 22 21 43 43 H 1.09001 * 110.84456 * 216.39097 * 25 17 15 44 44 H 1.08995 * 110.84740 * 340.01197 * 25 17 15 45 45 H 1.09005 * 111.12834 * 276.21155 * 26 25 17 46 46 H 1.09006 * 111.12217 * 152.05159 * 26 25 17 47 47 H 1.08994 * 110.31266 * 204.64317 * 27 26 25 48 48 H 1.09000 * 110.30942 * 82.46488 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3464 -0.0006 5 1 1.8893 2.3965 -1.2125 6 1 1.8894 2.3965 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0877 -1.2040 0.0507 9 7 1.3250 -2.3897 -0.0660 10 6 0.2331 -2.6586 0.8731 11 6 0.8051 -3.2422 2.1666 12 6 -0.3181 -3.5193 3.1323 13 8 -1.4591 -3.2755 2.8181 14 8 -0.0511 -4.0370 4.3416 15 6 1.6571 -3.3086 -0.9943 16 8 0.9993 -4.3213 -1.1076 17 6 2.8458 -3.0779 -1.8914 18 6 3.4108 -4.4204 -2.3597 19 1 4.3267 -4.2517 -2.9260 20 6 3.7169 -5.2980 -1.1432 21 6 4.2253 -6.6614 -1.6220 22 6 3.1756 -7.2906 -2.5432 23 6 2.8904 -6.3360 -3.7056 24 8 2.4513 -5.0777 -3.1901 25 6 2.4262 -2.2316 -3.1126 26 6 2.8674 -0.8035 -2.6911 27 6 4.1442 -1.1197 -1.8721 28 8 3.8539 -2.3467 -1.1838 29 1 -0.4850 0.8400 0.0004 30 1 -0.2924 -1.7297 1.0948 31 1 -0.4610 -3.3717 0.4285 32 1 1.3306 -4.1710 1.9449 33 1 1.4993 -2.5291 2.6111 34 1 -0.8043 -4.1978 4.9264 35 1 4.4811 -4.8187 -0.5314 36 1 2.8098 -5.4338 -0.5544 37 1 4.3922 -7.3106 -0.7624 38 1 5.1592 -6.5309 -2.1687 39 1 2.2576 -7.4666 -1.9827 40 1 3.5517 -8.2367 -2.9327 41 1 2.1129 -6.7597 -4.3414 42 1 3.7994 -6.1924 -4.2896 43 1 2.9575 -2.5533 -4.0084 44 1 1.3476 -2.2758 -3.2630 45 1 2.1102 -0.3258 -2.0693 46 1 3.1011 -0.1914 -3.5623 47 1 4.3417 -0.3219 -1.1562 48 1 4.9974 -1.2518 -2.5375 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601072722.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:46 Heat of formation + Delta-G solvation = -219.894037 kcal Electronic energy + Delta-G solvation = -33541.979382 eV Core-core repulsion = 29175.930046 eV Total energy + Delta-G solvation = -4366.049336 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.176 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.92169 -41.22170 -39.68730 -38.99454 -37.21755 -36.69192 -34.50233 -33.81304 -33.00924 -32.67269 -32.13748 -29.54927 -27.03257 -25.83041 -25.69345 -24.56279 -23.16016 -22.46879 -21.71589 -21.14665 -20.71181 -19.40403 -19.00052 -17.89891 -17.60049 -17.32412 -17.03737 -16.87021 -16.49252 -16.27032 -16.06630 -15.50967 -15.43945 -15.33345 -15.25908 -14.74820 -14.39011 -14.24266 -14.06505 -14.04085 -13.83029 -13.49691 -13.31944 -13.11486 -12.75062 -12.58849 -12.54623 -12.48737 -12.32190 -12.23888 -12.14364 -11.90159 -11.82018 -11.75311 -11.71006 -11.61785 -11.42164 -11.11044 -10.89666 -10.65990 -10.19636 -9.82482 -9.15192 -8.09478 -6.03226 1.18552 1.42766 1.48401 1.58668 1.86877 2.09943 2.38953 2.72223 3.05954 3.16695 3.41482 3.69110 3.78687 4.00460 4.02848 4.04699 4.12687 4.14940 4.20901 4.26237 4.29856 4.42741 4.48210 4.54124 4.59552 4.69679 4.75718 4.80072 4.87950 4.89497 4.93862 4.99432 5.05623 5.07098 5.12675 5.16110 5.21669 5.30220 5.45562 5.51330 5.58368 5.62500 5.78336 6.15185 6.28048 6.49338 6.67533 6.99811 7.26397 7.68605 8.14908 8.89553 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.009078 B = 0.006240 C = 0.004177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3083.572271 B = 4485.777820 C = 6702.543084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.003 3.997 3 Si 0.949 3.051 4 H -0.232 1.232 5 H -0.277 1.277 6 H -0.292 1.292 7 C -0.331 4.331 8 H 0.127 0.873 9 N -0.447 5.447 10 C 0.124 3.876 11 C -0.111 4.111 12 C 0.494 3.506 13 O -0.550 6.550 14 O -0.507 6.507 15 C 0.480 3.520 16 O -0.605 6.605 17 C 0.123 3.877 18 C 0.112 3.888 19 H 0.080 0.920 20 C -0.150 4.150 21 C -0.112 4.112 22 C -0.151 4.151 23 C 0.055 3.945 24 O -0.385 6.385 25 C -0.113 4.113 26 C -0.165 4.165 27 C 0.056 3.944 28 O -0.358 6.358 29 H 0.264 0.736 30 H 0.095 0.905 31 H 0.029 0.971 32 H 0.096 0.904 33 H 0.115 0.885 34 H 0.426 0.574 35 H 0.072 0.928 36 H 0.046 0.954 37 H 0.071 0.929 38 H 0.081 0.919 39 H 0.044 0.956 40 H 0.097 0.903 41 H 0.096 0.904 42 H 0.068 0.932 43 H 0.098 0.902 44 H 0.045 0.955 45 H 0.083 0.917 46 H 0.096 0.904 47 H 0.086 0.914 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.830 -5.931 -2.767 13.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.198 4.198 3 Si 0.773 3.227 4 H -0.155 1.155 5 H -0.203 1.203 6 H -0.218 1.218 7 C -0.458 4.458 8 H 0.144 0.856 9 N -0.166 5.166 10 C -0.001 4.001 11 C -0.150 4.150 12 C 0.337 3.663 13 O -0.441 6.441 14 O -0.321 6.321 15 C 0.268 3.732 16 O -0.491 6.491 17 C 0.080 3.920 18 C 0.054 3.946 19 H 0.098 0.902 20 C -0.187 4.187 21 C -0.149 4.149 22 C -0.189 4.189 23 C -0.021 4.021 24 O -0.304 6.304 25 C -0.151 4.151 26 C -0.202 4.202 27 C -0.019 4.019 28 O -0.277 6.277 29 H 0.074 0.926 30 H 0.112 0.888 31 H 0.047 0.953 32 H 0.114 0.886 33 H 0.133 0.867 34 H 0.287 0.713 35 H 0.090 0.910 36 H 0.065 0.935 37 H 0.090 0.910 38 H 0.100 0.900 39 H 0.063 0.937 40 H 0.115 0.885 41 H 0.114 0.886 42 H 0.086 0.914 43 H 0.116 0.884 44 H 0.064 0.936 45 H 0.101 0.899 46 H 0.114 0.886 47 H 0.104 0.896 48 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 11.294 -6.139 -2.987 13.197 hybrid contribution -1.091 0.808 0.637 1.499 sum 10.203 -5.331 -2.349 11.749 Atomic orbital electron populations 1.69917 1.07835 1.27680 1.49269 1.26407 0.95584 1.02476 0.95292 0.85587 0.80833 0.78723 0.77555 1.15502 1.20268 1.21826 1.20563 0.93460 0.81265 1.50533 0.85579 1.43503 1.30700 1.15955 1.26411 1.21050 0.90475 1.00843 0.87700 1.21581 0.95811 1.03685 0.93875 1.23452 0.89718 0.71813 0.81269 1.90698 1.25136 1.50505 1.77734 1.84511 1.45487 1.75576 1.26507 1.21150 0.86893 0.83817 0.81304 1.90546 1.55915 1.30947 1.71664 1.21755 0.86430 0.92412 0.91443 1.21944 0.90918 0.90193 0.91557 0.90226 1.22168 1.01231 0.97171 0.98161 1.21544 0.98544 0.95003 0.99843 1.22141 0.99198 0.99853 0.97715 1.22748 1.00769 0.83437 0.95171 1.88020 1.42254 1.34211 1.65923 1.22736 1.00905 0.94833 0.96606 1.23582 0.99170 0.96520 1.00927 1.23454 0.96553 0.86274 0.95658 1.88385 1.56770 1.33525 1.49015 0.92636 0.88755 0.95277 0.88624 0.86704 0.71270 0.90960 0.93472 0.91031 0.90028 0.93669 0.88456 0.88563 0.91390 0.88397 0.93594 0.89872 0.88577 0.89588 0.89859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.90 11.16 21.66 0.24 -48.66 16 2 C 0.00 0.16 4.15 84.93 0.35 0.52 16 3 Si 0.95 37.14 27.55 68.60 1.89 39.03 16 4 H -0.23 -7.91 6.30 99.48 0.63 -7.28 16 5 H -0.28 -10.77 7.11 99.48 0.71 -10.06 16 6 H -0.29 -11.84 7.11 99.48 0.71 -11.13 16 7 C -0.33 -15.64 5.60 84.04 0.47 -15.17 16 8 H 0.13 5.67 4.07 -2.91 -0.01 5.65 16 9 N -0.45 -22.36 2.47 -635.54 -1.57 -23.93 16 10 C 0.12 6.28 4.42 86.38 0.38 6.66 16 11 C -0.11 -4.55 6.12 29.85 0.18 -4.37 16 12 C 0.49 18.79 8.33 71.23 0.59 19.38 16 13 O -0.55 -24.84 16.74 21.96 0.37 -24.48 16 14 O -0.51 -14.16 13.42 -51.42 -0.69 -14.85 16 15 C 0.48 23.49 5.58 87.66 0.49 23.98 16 16 O -0.61 -32.85 13.47 14.90 0.20 -32.65 16 17 C 0.12 4.87 0.56 -11.07 -0.01 4.86 16 18 C 0.11 3.87 1.89 30.63 0.06 3.93 16 19 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 20 C -0.15 -5.02 4.97 30.69 0.15 -4.87 16 21 C -0.11 -2.80 6.03 30.71 0.19 -2.61 16 22 C -0.15 -3.77 6.14 30.69 0.19 -3.58 16 23 C 0.06 1.45 6.84 72.01 0.49 1.94 16 24 O -0.38 -14.06 8.75 -131.02 -1.15 -15.21 16 25 C -0.11 -4.17 5.63 31.86 0.18 -3.99 16 26 C -0.16 -5.61 6.36 32.05 0.20 -5.41 16 27 C 0.06 1.73 6.56 72.65 0.48 2.21 16 28 O -0.36 -13.32 7.83 -148.98 -1.17 -14.49 16 29 H 0.26 13.69 8.31 -92.71 -0.77 12.92 16 30 H 0.09 5.29 5.61 -2.39 -0.01 5.28 16 31 H 0.03 1.62 7.20 -2.39 -0.02 1.61 16 32 H 0.10 3.83 8.14 -2.39 -0.02 3.81 16 33 H 0.11 4.47 8.14 -2.39 -0.02 4.45 16 34 H 0.43 7.51 9.10 -74.06 -0.67 6.84 16 35 H 0.07 2.35 7.95 -2.39 -0.02 2.33 16 36 H 0.05 1.97 6.03 -2.39 -0.01 1.95 16 37 H 0.07 1.64 8.14 -2.38 -0.02 1.62 16 38 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 41 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 42 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 43 H 0.10 3.00 7.85 -2.39 -0.02 2.98 16 44 H 0.05 2.00 7.82 -2.39 -0.02 1.98 16 45 H 0.08 3.45 3.69 -2.38 -0.01 3.44 16 46 H 0.10 2.60 8.14 -2.38 -0.02 2.58 16 47 H 0.09 2.64 5.90 -2.39 -0.01 2.63 16 48 H 0.08 1.97 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -70.28 364.17 2.77 -67.51 By element: Atomic # 1 Polarization: 44.00 SS G_CDS: 0.25 Total: 44.24 kcal Atomic # 6 Polarization: 19.08 SS G_CDS: 4.40 Total: 23.48 kcal Atomic # 7 Polarization: -71.26 SS G_CDS: -1.33 Total: -72.59 kcal Atomic # 8 Polarization: -99.25 SS G_CDS: -2.43 Total: -101.68 kcal Atomic # 14 Polarization: 37.14 SS G_CDS: 1.89 Total: 39.03 kcal Total: -70.28 2.77 -67.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601072722.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -152.383 kcal (2) G-P(sol) polarization free energy of solvation -70.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -222.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -219.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds