Wall clock time and date at job start Sat Apr 11 2020 06:19:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86800 * 120.00240 * 2 1 4 4 H 1.48509 * 109.46740 * 274.81931 * 3 2 1 5 5 H 1.48493 * 109.47009 * 34.81346 * 3 2 1 6 6 H 1.48493 * 109.47073 * 154.82090 * 3 2 1 7 7 C 1.38955 * 119.99585 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00017 * 2.35342 * 7 2 1 9 9 N 1.37099 * 119.99798 * 182.35781 * 7 2 1 10 10 C 1.46499 * 119.99752 * 284.84592 * 9 7 2 11 11 C 1.52994 * 109.47122 * 270.00114 * 10 9 7 12 12 C 1.50703 * 109.47469 * 180.02562 * 11 10 9 13 13 O 1.20822 * 119.99492 * 359.97438 * 12 11 10 14 14 O 1.34222 * 120.00226 * 180.02562 * 12 11 10 15 15 C 1.34778 * 120.00173 * 104.84266 * 9 7 2 16 16 O 1.21293 * 120.00020 * 178.36413 * 15 9 7 17 17 C 1.50700 * 119.99939 * 358.36843 * 15 9 7 18 18 C 1.53001 * 110.27550 * 214.15879 * 17 15 9 19 19 H 1.08997 * 109.48603 * 300.16479 * 18 17 15 20 20 C 1.53106 * 109.48095 * 60.10099 * 18 17 15 21 21 C 1.53176 * 109.15732 * 177.50292 * 20 18 17 22 22 C 1.53173 * 109.10920 * 303.15713 * 21 20 18 23 23 C 1.53090 * 109.16803 * 56.93220 * 22 21 20 24 24 O 1.42894 * 109.48184 * 180.13199 * 18 17 15 25 25 C 1.54943 * 110.39399 * 92.01060 * 17 15 9 26 26 C 1.55308 * 100.94255 * 277.48695 * 25 17 15 27 27 C 1.54377 * 102.25273 * 325.86624 * 26 25 17 28 28 O 1.43237 * 107.59066 * 21.35529 * 27 26 25 29 29 H 0.96997 * 119.99837 * 5.00164 * 1 2 3 30 30 H 1.09000 * 109.47454 * 29.99831 * 10 9 7 31 31 H 1.08999 * 109.46917 * 150.00028 * 10 9 7 32 32 H 1.09011 * 109.47148 * 299.99953 * 11 10 9 33 33 H 1.08999 * 109.47295 * 60.00145 * 11 10 9 34 34 H 0.96697 * 117.00334 * 180.02562 * 14 12 11 35 35 H 1.08997 * 109.45073 * 57.64482 * 20 18 17 36 36 H 1.09002 * 109.60021 * 297.45046 * 20 18 17 37 37 H 1.08996 * 109.54465 * 183.23774 * 21 20 18 38 38 H 1.09007 * 109.54122 * 63.06535 * 21 20 18 39 39 H 1.09005 * 109.52424 * 176.84087 * 22 21 20 40 40 H 1.09001 * 109.51969 * 296.96157 * 22 21 20 41 41 H 1.08996 * 109.47736 * 62.37426 * 23 22 21 42 42 H 1.09002 * 109.48159 * 182.39592 * 23 22 21 43 43 H 1.09002 * 111.12756 * 35.40797 * 25 17 15 44 44 H 1.09003 * 111.12781 * 159.56774 * 25 17 15 45 45 H 1.09003 * 110.84413 * 207.67530 * 26 25 17 46 46 H 1.08999 * 111.02396 * 84.13716 * 26 25 17 47 47 H 1.09003 * 109.82869 * 261.84413 * 27 26 25 48 48 H 1.08994 * 109.82827 * 140.87209 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.3938 2.1051 -1.3952 5 1 1.5003 2.6211 0.7993 6 1 3.5929 1.4128 0.5956 7 6 2.0088 -1.2034 -0.0005 8 1 1.4695 -2.1383 -0.0394 9 7 3.3790 -1.2040 0.0483 10 6 4.1545 -0.8535 -1.1441 11 6 4.4381 -2.1178 -1.9578 12 6 5.2365 -1.7574 -3.1841 13 8 5.5464 -0.6073 -3.3867 14 8 5.6024 -2.7139 -4.0518 15 6 4.0124 -1.5269 1.1933 16 8 5.2244 -1.5563 1.2284 17 6 3.2146 -1.8516 2.4300 18 6 3.9540 -1.3694 3.6796 19 1 4.9249 -1.8611 3.7401 20 6 4.1555 0.1463 3.6007 21 6 4.8402 0.6299 4.8827 22 6 3.9933 0.2162 6.0901 23 6 3.8000 -1.3023 6.0720 24 8 3.1851 -1.6881 4.8411 25 6 2.9493 -3.3757 2.5166 26 6 1.7159 -3.5137 1.5830 27 6 0.9676 -2.1862 1.8302 28 8 1.9132 -1.2479 2.3566 29 1 -0.4850 0.8368 -0.0732 30 1 3.5871 -0.1495 -1.7527 31 1 5.0970 -0.3962 -0.8430 32 1 5.0057 -2.8219 -1.3492 33 1 3.4956 -2.5751 -2.2589 34 1 6.1138 -2.4344 -4.8234 35 1 3.1873 0.6363 3.4978 36 1 4.7803 0.3878 2.7407 37 1 4.9349 1.7154 4.8584 38 1 5.8298 0.1792 4.9599 39 1 4.5021 0.5077 7.0090 40 1 3.0222 0.7086 6.0397 41 1 4.7688 -1.7932 6.1638 42 1 3.1624 -1.5976 6.9054 43 1 3.7970 -3.9444 2.1344 44 1 2.7057 -3.6747 3.5361 45 1 1.1016 -4.3655 1.8752 46 1 2.0222 -3.5981 0.5403 47 1 0.1634 -2.3434 2.5489 48 1 0.5586 -1.8121 0.8917 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601072724.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:49 Heat of formation + Delta-G solvation = -168.043422 kcal Electronic energy + Delta-G solvation = -33686.485558 eV Core-core repulsion = 29322.684633 eV Total energy + Delta-G solvation = -4363.800925 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.176 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.52517 -39.93259 -38.58181 -37.24900 -36.00890 -35.20343 -33.32323 -32.54263 -31.52592 -31.17986 -30.70039 -28.18802 -25.44012 -24.52839 -24.23627 -23.13214 -21.81168 -20.90984 -20.44448 -19.77756 -18.96561 -17.94006 -17.49979 -16.66834 -16.44923 -16.02578 -15.78118 -15.33560 -15.06474 -14.78219 -14.34254 -14.27883 -14.11540 -13.90654 -13.68316 -13.24765 -13.04306 -12.95744 -12.67580 -12.55352 -12.40394 -12.03104 -11.99010 -11.58740 -11.33938 -11.18738 -11.10692 -11.01410 -10.88510 -10.82131 -10.65891 -10.50746 -10.36551 -10.28184 -10.26135 -10.12174 -9.88158 -9.79998 -9.36770 -9.02399 -8.42883 -7.91739 -7.45540 -6.33744 -4.33574 2.46915 3.18575 3.20186 3.29912 3.40657 3.47559 3.95027 4.25768 4.59536 4.86247 4.93284 4.96871 5.04059 5.12689 5.28291 5.30778 5.34113 5.47673 5.49868 5.54855 5.62907 5.72915 5.79789 5.82578 5.94799 5.96897 6.04399 6.08686 6.14708 6.16061 6.22955 6.34654 6.36165 6.40449 6.44210 6.52188 6.56499 6.60534 6.71100 6.77243 7.09976 7.46380 7.58726 7.73886 8.02179 8.08916 8.12036 8.28216 9.01218 9.17689 9.58615 10.63678 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.011987 B = 0.005027 C = 0.004737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2335.328986 B = 5568.721521 C = 5908.980819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.094 3.906 3 Si 0.877 3.123 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.261 1.261 7 C -0.363 4.363 8 H 0.124 0.876 9 N -0.463 5.463 10 C 0.114 3.886 11 C -0.122 4.122 12 C 0.483 3.517 13 O -0.519 6.519 14 O -0.521 6.521 15 C 0.503 3.497 16 O -0.587 6.587 17 C 0.118 3.882 18 C 0.118 3.882 19 H 0.069 0.931 20 C -0.149 4.149 21 C -0.120 4.120 22 C -0.155 4.155 23 C 0.063 3.937 24 O -0.366 6.366 25 C -0.133 4.133 26 C -0.152 4.152 27 C 0.043 3.957 28 O -0.326 6.326 29 H 0.276 0.724 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.103 0.897 33 H 0.112 0.888 34 H 0.403 0.597 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.062 0.938 38 H 0.060 0.940 39 H 0.066 0.934 40 H 0.071 0.929 41 H 0.044 0.956 42 H 0.089 0.911 43 H 0.069 0.931 44 H 0.085 0.915 45 H 0.063 0.937 46 H 0.078 0.922 47 H 0.027 0.973 48 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.153 -4.945 4.041 8.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.115 4.115 3 Si 0.704 3.296 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.185 1.185 7 C -0.490 4.490 8 H 0.140 0.860 9 N -0.184 5.184 10 C -0.009 4.009 11 C -0.160 4.160 12 C 0.326 3.674 13 O -0.408 6.408 14 O -0.333 6.333 15 C 0.291 3.709 16 O -0.471 6.471 17 C 0.074 3.926 18 C 0.060 3.940 19 H 0.087 0.913 20 C -0.187 4.187 21 C -0.157 4.157 22 C -0.193 4.193 23 C -0.015 4.015 24 O -0.285 6.285 25 C -0.171 4.171 26 C -0.190 4.190 27 C -0.032 4.032 28 O -0.244 6.244 29 H 0.087 0.913 30 H 0.094 0.906 31 H 0.089 0.911 32 H 0.121 0.879 33 H 0.130 0.870 34 H 0.261 0.739 35 H 0.097 0.903 36 H 0.093 0.907 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.085 0.915 40 H 0.090 0.910 41 H 0.063 0.937 42 H 0.107 0.893 43 H 0.088 0.912 44 H 0.103 0.897 45 H 0.082 0.918 46 H 0.097 0.903 47 H 0.046 0.954 48 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 5.167 -4.503 4.447 8.170 hybrid contribution 0.977 1.109 -0.643 1.611 sum 6.144 -3.395 3.805 7.984 Atomic orbital electron populations 1.69444 1.06024 1.28639 1.46133 1.25428 0.94936 0.98639 0.92463 0.86679 0.81226 0.83518 0.78163 1.20522 1.21137 1.18496 1.19802 0.78236 0.95679 1.55235 0.85987 1.43520 1.06814 1.62106 1.05995 1.21463 0.97528 0.93715 0.88220 1.21780 1.00357 1.02720 0.91180 1.23778 0.76831 0.82873 0.83915 1.90700 1.53204 1.21594 1.75265 1.84581 1.69028 1.43118 1.36577 1.20990 0.87113 0.77319 0.85466 1.90558 1.14468 1.56274 1.85787 1.21907 0.87012 0.93270 0.90410 1.21804 0.93196 0.94737 0.84234 0.91286 1.22146 1.02247 0.96393 0.97876 1.21571 0.98580 1.00863 0.94704 1.22181 1.01208 0.97532 0.98358 1.22495 0.97782 0.93826 0.87350 1.87950 1.46346 1.81162 1.13064 1.23103 0.98645 0.94124 1.01190 1.23246 0.96381 0.99255 1.00070 1.24014 0.90409 0.86393 1.02365 1.88484 1.14474 1.37115 1.84374 0.91319 0.90584 0.91081 0.87904 0.86994 0.73903 0.90297 0.90650 0.91883 0.92157 0.91518 0.90978 0.93739 0.89258 0.91204 0.89670 0.91842 0.90342 0.95450 0.82868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -21.93 12.56 55.50 0.70 -21.23 16 2 C 0.09 2.32 4.23 -17.46 -0.07 2.24 16 3 Si 0.88 21.06 26.24 -169.99 -4.46 16.60 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.26 -6.48 7.10 56.52 0.40 -6.08 16 7 C -0.36 -8.39 5.01 -14.93 -0.07 -8.46 16 8 H 0.12 2.82 3.56 -52.49 -0.19 2.63 16 9 N -0.46 -10.26 1.51 -114.88 -0.17 -10.44 16 10 C 0.11 2.38 3.58 -4.05 -0.01 2.36 16 11 C -0.12 -2.07 6.13 -27.88 -0.17 -2.24 16 12 C 0.48 7.83 8.33 36.01 0.30 8.13 16 13 O -0.52 -9.96 16.74 -18.75 -0.31 -10.28 16 14 O -0.52 -6.54 13.42 -39.24 -0.53 -7.07 16 15 C 0.50 11.20 5.52 -10.98 -0.06 11.13 16 16 O -0.59 -13.81 15.37 5.55 0.09 -13.72 16 17 C 0.12 2.42 0.60 -90.75 -0.05 2.37 16 18 C 0.12 2.25 1.78 -26.68 -0.05 2.20 16 19 H 0.07 1.29 7.90 -51.93 -0.41 0.88 16 20 C -0.15 -2.85 5.03 -26.59 -0.13 -2.98 16 21 C -0.12 -1.79 6.02 -26.55 -0.16 -1.95 16 22 C -0.16 -2.04 6.14 -26.60 -0.16 -2.20 16 23 C 0.06 0.85 6.84 37.20 0.25 1.10 16 24 O -0.37 -6.50 9.39 -44.77 -0.42 -6.92 16 25 C -0.13 -2.38 5.99 -24.48 -0.15 -2.52 16 26 C -0.15 -2.71 6.20 -24.79 -0.15 -2.86 16 27 C 0.04 0.91 6.14 37.88 0.23 1.14 16 28 O -0.33 -7.41 8.03 -44.77 -0.36 -7.77 16 29 H 0.28 6.78 8.32 -40.82 -0.34 6.44 16 30 H 0.08 1.66 6.46 -51.93 -0.34 1.32 16 31 H 0.07 1.58 7.40 -51.93 -0.38 1.19 16 32 H 0.10 1.71 8.14 -51.92 -0.42 1.29 16 33 H 0.11 1.79 8.14 -51.93 -0.42 1.36 16 34 H 0.40 3.18 9.10 45.56 0.41 3.59 16 35 H 0.08 1.66 7.71 -51.93 -0.40 1.26 16 36 H 0.07 1.59 6.96 -51.93 -0.36 1.23 16 37 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 38 H 0.06 0.84 8.14 -51.92 -0.42 0.42 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 43 H 0.07 1.19 8.03 -51.93 -0.42 0.77 16 44 H 0.08 1.45 7.32 -51.93 -0.38 1.07 16 45 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 46 H 0.08 1.43 6.46 -51.93 -0.34 1.09 16 47 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 48 H 0.15 3.57 2.86 -52.05 -0.15 3.43 16 LS Contribution 365.62 15.07 5.51 5.51 Total: -1.00 -29.24 365.62 -6.74 -35.98 By element: Atomic # 1 Polarization: 18.17 SS G_CDS: -6.31 Total: 11.86 kcal Atomic # 6 Polarization: 7.94 SS G_CDS: -0.47 Total: 7.47 kcal Atomic # 7 Polarization: -32.19 SS G_CDS: 0.52 Total: -31.67 kcal Atomic # 8 Polarization: -44.22 SS G_CDS: -1.54 Total: -45.75 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -4.46 Total: 16.60 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -29.24 -6.74 -35.98 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601072724.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.063 kcal (2) G-P(sol) polarization free energy of solvation -29.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds