Wall clock time and date at job start Sat Apr 11 2020 06:19:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86800 * 120.00240 * 2 1 4 4 H 1.48509 * 109.46740 * 274.81931 * 3 2 1 5 5 H 1.48493 * 109.47009 * 34.81346 * 3 2 1 6 6 H 1.48493 * 109.47073 * 154.82090 * 3 2 1 7 7 C 1.38955 * 119.99585 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00017 * 2.35342 * 7 2 1 9 9 N 1.37099 * 119.99798 * 182.35781 * 7 2 1 10 10 C 1.46499 * 119.99752 * 284.84592 * 9 7 2 11 11 C 1.52994 * 109.47122 * 270.00114 * 10 9 7 12 12 C 1.50703 * 109.47469 * 180.02562 * 11 10 9 13 13 O 1.20822 * 119.99492 * 359.97438 * 12 11 10 14 14 O 1.34222 * 120.00226 * 180.02562 * 12 11 10 15 15 C 1.34778 * 120.00173 * 104.84266 * 9 7 2 16 16 O 1.21293 * 120.00020 * 178.36413 * 15 9 7 17 17 C 1.50700 * 119.99939 * 358.36843 * 15 9 7 18 18 C 1.53001 * 110.27550 * 214.15879 * 17 15 9 19 19 H 1.08997 * 109.48603 * 300.16479 * 18 17 15 20 20 C 1.53106 * 109.48095 * 60.10099 * 18 17 15 21 21 C 1.53176 * 109.15732 * 177.50292 * 20 18 17 22 22 C 1.53173 * 109.10920 * 303.15713 * 21 20 18 23 23 C 1.53090 * 109.16803 * 56.93220 * 22 21 20 24 24 O 1.42894 * 109.48184 * 180.13199 * 18 17 15 25 25 C 1.54943 * 110.39399 * 92.01060 * 17 15 9 26 26 C 1.55308 * 100.94255 * 277.48695 * 25 17 15 27 27 C 1.54377 * 102.25273 * 325.86624 * 26 25 17 28 28 O 1.43237 * 107.59066 * 21.35529 * 27 26 25 29 29 H 0.96997 * 119.99837 * 5.00164 * 1 2 3 30 30 H 1.09000 * 109.47454 * 29.99831 * 10 9 7 31 31 H 1.08999 * 109.46917 * 150.00028 * 10 9 7 32 32 H 1.09011 * 109.47148 * 299.99953 * 11 10 9 33 33 H 1.08999 * 109.47295 * 60.00145 * 11 10 9 34 34 H 0.96697 * 117.00334 * 180.02562 * 14 12 11 35 35 H 1.08997 * 109.45073 * 57.64482 * 20 18 17 36 36 H 1.09002 * 109.60021 * 297.45046 * 20 18 17 37 37 H 1.08996 * 109.54465 * 183.23774 * 21 20 18 38 38 H 1.09007 * 109.54122 * 63.06535 * 21 20 18 39 39 H 1.09005 * 109.52424 * 176.84087 * 22 21 20 40 40 H 1.09001 * 109.51969 * 296.96157 * 22 21 20 41 41 H 1.08996 * 109.47736 * 62.37426 * 23 22 21 42 42 H 1.09002 * 109.48159 * 182.39592 * 23 22 21 43 43 H 1.09002 * 111.12756 * 35.40797 * 25 17 15 44 44 H 1.09003 * 111.12781 * 159.56774 * 25 17 15 45 45 H 1.09003 * 110.84413 * 207.67530 * 26 25 17 46 46 H 1.08999 * 111.02396 * 84.13716 * 26 25 17 47 47 H 1.09003 * 109.82869 * 261.84413 * 27 26 25 48 48 H 1.08994 * 109.82827 * 140.87209 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.3938 2.1051 -1.3952 5 1 1.5003 2.6211 0.7993 6 1 3.5929 1.4128 0.5956 7 6 2.0088 -1.2034 -0.0005 8 1 1.4695 -2.1383 -0.0394 9 7 3.3790 -1.2040 0.0483 10 6 4.1545 -0.8535 -1.1441 11 6 4.4381 -2.1178 -1.9578 12 6 5.2365 -1.7574 -3.1841 13 8 5.5464 -0.6073 -3.3867 14 8 5.6024 -2.7139 -4.0518 15 6 4.0124 -1.5269 1.1933 16 8 5.2244 -1.5563 1.2284 17 6 3.2146 -1.8516 2.4300 18 6 3.9540 -1.3694 3.6796 19 1 4.9249 -1.8611 3.7401 20 6 4.1555 0.1463 3.6007 21 6 4.8402 0.6299 4.8827 22 6 3.9933 0.2162 6.0901 23 6 3.8000 -1.3023 6.0720 24 8 3.1851 -1.6881 4.8411 25 6 2.9493 -3.3757 2.5166 26 6 1.7159 -3.5137 1.5830 27 6 0.9676 -2.1862 1.8302 28 8 1.9132 -1.2479 2.3566 29 1 -0.4850 0.8368 -0.0732 30 1 3.5871 -0.1495 -1.7527 31 1 5.0970 -0.3962 -0.8430 32 1 5.0057 -2.8219 -1.3492 33 1 3.4956 -2.5751 -2.2589 34 1 6.1138 -2.4344 -4.8234 35 1 3.1873 0.6363 3.4978 36 1 4.7803 0.3878 2.7407 37 1 4.9349 1.7154 4.8584 38 1 5.8298 0.1792 4.9599 39 1 4.5021 0.5077 7.0090 40 1 3.0222 0.7086 6.0397 41 1 4.7688 -1.7932 6.1638 42 1 3.1624 -1.5976 6.9054 43 1 3.7970 -3.9444 2.1344 44 1 2.7057 -3.6747 3.5361 45 1 1.1016 -4.3655 1.8752 46 1 2.0222 -3.5981 0.5403 47 1 0.1634 -2.3434 2.5489 48 1 0.5586 -1.8121 0.8917 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601072724.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:48 Heat of formation + Delta-G solvation = -187.122547 kcal Electronic energy + Delta-G solvation = -33687.312891 eV Core-core repulsion = 29322.684633 eV Total energy + Delta-G solvation = -4364.628258 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.176 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.13936 -41.23700 -39.96155 -38.92556 -37.30559 -36.85583 -34.60683 -34.34592 -32.98735 -32.70273 -32.28451 -29.66200 -27.08006 -26.04351 -25.75014 -24.49627 -23.27819 -22.36161 -21.88918 -21.13518 -20.69398 -19.33938 -19.03435 -18.34529 -17.87404 -17.45647 -17.11597 -16.77684 -16.57265 -16.35758 -15.94759 -15.83140 -15.57570 -15.43443 -15.26458 -14.73216 -14.44333 -14.33904 -14.22903 -14.05915 -13.81072 -13.75384 -13.50278 -13.19077 -13.04654 -12.62119 -12.56244 -12.46998 -12.32220 -12.27288 -12.22420 -11.99432 -11.98992 -11.84767 -11.67172 -11.62547 -11.54681 -11.14907 -11.08322 -10.37022 -10.27598 -9.63996 -9.27070 -8.26406 -6.22800 1.17612 1.21058 1.29547 1.41199 1.70538 1.97441 2.29159 2.53326 3.00778 3.11478 3.30506 3.59297 3.78771 3.87636 3.88237 3.92935 3.95626 4.07844 4.10098 4.16786 4.25359 4.41563 4.44988 4.53402 4.57879 4.64114 4.69970 4.73229 4.78868 4.81205 4.90165 4.93402 4.95800 4.99489 5.03856 5.10007 5.15743 5.18529 5.35753 5.55319 5.57508 5.65565 5.99401 6.16627 6.27438 6.30309 6.62897 6.98468 7.17556 7.32429 7.77263 8.71512 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.011987 B = 0.005027 C = 0.004737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2335.328986 B = 5568.721521 C = 5908.980819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.073 3.927 3 Si 0.897 3.103 4 H -0.279 1.279 5 H -0.293 1.293 6 H -0.280 1.280 7 C -0.338 4.338 8 H 0.130 0.870 9 N -0.471 5.471 10 C 0.114 3.886 11 C -0.113 4.113 12 C 0.495 3.505 13 O -0.555 6.555 14 O -0.506 6.506 15 C 0.498 3.502 16 O -0.604 6.604 17 C 0.106 3.894 18 C 0.126 3.874 19 H 0.073 0.927 20 C -0.147 4.147 21 C -0.117 4.117 22 C -0.150 4.150 23 C 0.053 3.947 24 O -0.382 6.382 25 C -0.123 4.123 26 C -0.142 4.142 27 C 0.039 3.961 28 O -0.350 6.350 29 H 0.274 0.726 30 H 0.062 0.938 31 H 0.051 0.949 32 H 0.111 0.889 33 H 0.127 0.873 34 H 0.427 0.573 35 H 0.048 0.952 36 H 0.044 0.956 37 H 0.069 0.931 38 H 0.073 0.927 39 H 0.102 0.898 40 H 0.058 0.942 41 H 0.062 0.938 42 H 0.115 0.885 43 H 0.080 0.920 44 H 0.098 0.902 45 H 0.094 0.906 46 H 0.074 0.926 47 H 0.029 0.971 48 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.900 -6.997 5.076 10.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.133 4.133 3 Si 0.726 3.274 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.205 1.205 7 C -0.465 4.465 8 H 0.147 0.853 9 N -0.192 5.192 10 C -0.009 4.009 11 C -0.152 4.152 12 C 0.339 3.661 13 O -0.446 6.446 14 O -0.319 6.319 15 C 0.287 3.713 16 O -0.488 6.488 17 C 0.062 3.938 18 C 0.067 3.933 19 H 0.090 0.910 20 C -0.185 4.185 21 C -0.155 4.155 22 C -0.187 4.187 23 C -0.023 4.023 24 O -0.301 6.301 25 C -0.161 4.161 26 C -0.179 4.179 27 C -0.037 4.037 28 O -0.268 6.268 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.069 0.931 32 H 0.129 0.871 33 H 0.145 0.855 34 H 0.289 0.711 35 H 0.067 0.933 36 H 0.062 0.938 37 H 0.088 0.912 38 H 0.092 0.908 39 H 0.120 0.880 40 H 0.077 0.923 41 H 0.080 0.920 42 H 0.133 0.867 43 H 0.099 0.901 44 H 0.116 0.884 45 H 0.112 0.888 46 H 0.093 0.907 47 H 0.047 0.953 48 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 5.922 -6.570 5.455 10.392 hybrid contribution 0.816 1.743 -0.964 2.152 sum 6.738 -4.828 4.491 9.427 Atomic orbital electron populations 1.69477 1.06164 1.28440 1.48121 1.25615 0.95045 0.99095 0.93529 0.86414 0.79823 0.83562 0.77636 1.20486 1.21923 1.20520 1.19862 0.78496 0.95401 1.52697 0.85338 1.43637 1.06658 1.62228 1.06711 1.21350 0.96033 0.95478 0.88046 1.21564 1.01578 1.00557 0.91479 1.23415 0.76161 0.82562 0.83971 1.90703 1.54671 1.23105 1.76135 1.84501 1.68882 1.41517 1.37028 1.21368 0.87136 0.76823 0.85931 1.90533 1.15175 1.57058 1.86072 1.22118 0.86089 0.95251 0.90296 1.21619 0.93065 0.94102 0.84487 0.90951 1.22070 1.00402 0.97000 0.99044 1.21589 0.99123 1.01375 0.93395 1.22168 1.00523 0.97263 0.98772 1.22848 0.99204 0.94146 0.86147 1.87918 1.46949 1.81374 1.13840 1.23092 0.98958 0.91993 1.02035 1.23163 0.96313 0.98490 0.99919 1.23934 0.90706 0.87806 1.01212 1.88478 1.15500 1.38452 1.84401 0.91528 0.91999 0.93054 0.87063 0.85479 0.71089 0.93272 0.93763 0.91238 0.90800 0.87990 0.92273 0.91952 0.86725 0.90089 0.88374 0.88794 0.90720 0.95335 0.85179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -45.46 12.56 21.67 0.27 -45.19 16 2 C 0.07 3.67 4.23 84.93 0.36 4.03 16 3 Si 0.90 44.46 26.24 68.60 1.80 46.26 16 4 H -0.28 -13.62 7.11 99.48 0.71 -12.92 16 5 H -0.29 -14.69 7.11 99.48 0.71 -13.99 16 6 H -0.28 -14.64 7.10 99.48 0.71 -13.94 16 7 C -0.34 -15.67 5.01 84.04 0.42 -15.25 16 8 H 0.13 5.87 3.56 -2.91 -0.01 5.86 16 9 N -0.47 -21.05 1.51 -635.75 -0.96 -22.02 16 10 C 0.11 4.82 3.58 86.38 0.31 5.13 16 11 C -0.11 -3.74 6.13 29.85 0.18 -3.55 16 12 C 0.50 15.38 8.33 71.24 0.59 15.97 16 13 O -0.55 -21.11 16.74 21.98 0.37 -20.74 16 14 O -0.51 -11.31 13.42 -51.34 -0.69 -12.00 16 15 C 0.50 22.28 5.52 87.66 0.48 22.77 16 16 O -0.60 -28.57 15.37 -3.07 -0.05 -28.61 16 17 C 0.11 4.31 0.60 -10.88 -0.01 4.30 16 18 C 0.13 4.70 1.78 30.63 0.05 4.75 16 19 H 0.07 2.63 7.90 -2.39 -0.02 2.62 16 20 C -0.15 -5.73 5.03 30.69 0.15 -5.58 16 21 C -0.12 -3.38 6.02 30.71 0.18 -3.20 16 22 C -0.15 -3.58 6.14 30.68 0.19 -3.39 16 23 C 0.05 1.27 6.84 72.01 0.49 1.77 16 24 O -0.38 -12.89 9.39 -139.86 -1.31 -14.20 16 25 C -0.12 -4.14 5.99 32.05 0.19 -3.95 16 26 C -0.14 -4.74 6.20 31.85 0.20 -4.54 16 27 C 0.04 1.60 6.14 72.45 0.44 2.04 16 28 O -0.35 -15.96 8.03 -139.86 -1.12 -17.08 16 29 H 0.27 13.76 8.32 -92.71 -0.77 12.99 16 30 H 0.06 2.76 6.46 -2.39 -0.02 2.75 16 31 H 0.05 2.35 7.40 -2.39 -0.02 2.34 16 32 H 0.11 3.52 8.14 -2.38 -0.02 3.50 16 33 H 0.13 3.82 8.14 -2.39 -0.02 3.80 16 34 H 0.43 5.45 9.10 -74.06 -0.67 4.78 16 35 H 0.05 2.16 7.71 -2.39 -0.02 2.14 16 36 H 0.04 1.95 6.96 -2.39 -0.02 1.93 16 37 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.07 1.93 8.14 -2.38 -0.02 1.91 16 39 H 0.10 1.76 8.14 -2.38 -0.02 1.74 16 40 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 43 H 0.08 2.55 8.03 -2.39 -0.02 2.53 16 44 H 0.10 3.06 7.32 -2.39 -0.02 3.05 16 45 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 46 H 0.07 2.56 6.46 -2.39 -0.02 2.55 16 47 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 48 H 0.13 6.06 2.86 -2.51 -0.01 6.06 16 Total: -1.00 -64.85 365.62 2.88 -61.97 By element: Atomic # 1 Polarization: 29.98 SS G_CDS: 0.32 Total: 30.31 kcal Atomic # 6 Polarization: 17.05 SS G_CDS: 4.25 Total: 21.30 kcal Atomic # 7 Polarization: -66.52 SS G_CDS: -0.69 Total: -67.21 kcal Atomic # 8 Polarization: -89.83 SS G_CDS: -2.81 Total: -92.64 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 1.80 Total: 46.26 kcal Total: -64.85 2.88 -61.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601072724.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.154 kcal (2) G-P(sol) polarization free energy of solvation -64.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds