Wall clock time and date at job start Sat Apr 11 2020 06:19:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86793 * 120.00167 * 2 1 4 4 H 1.48493 * 109.47366 * 272.62046 * 3 2 1 5 5 H 1.48498 * 109.47221 * 32.62248 * 3 2 1 6 6 H 1.48506 * 109.46939 * 152.62206 * 3 2 1 7 7 C 1.38950 * 119.99684 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99967 * 24.39407 * 7 2 1 9 9 N 1.37095 * 120.00032 * 204.38977 * 7 2 1 10 10 C 1.46496 * 120.00108 * 250.41754 * 9 7 2 11 11 C 1.53002 * 109.47462 * 270.00065 * 10 9 7 12 12 C 1.50700 * 109.47425 * 179.97438 * 11 10 9 13 13 O 1.20826 * 120.00162 * 0.02562 * 12 11 10 14 14 O 1.34231 * 119.99736 * 179.97438 * 12 11 10 15 15 C 1.34777 * 120.00233 * 70.41779 * 9 7 2 16 16 O 1.21288 * 120.00152 * 184.86247 * 15 9 7 17 17 C 1.50702 * 119.99534 * 4.86403 * 15 9 7 18 18 C 1.53004 * 109.86753 * 227.60661 * 17 15 9 19 19 H 1.08997 * 109.48894 * 172.38386 * 18 17 15 20 20 C 1.53089 * 109.48158 * 52.35358 * 18 17 15 21 21 C 1.53172 * 109.16382 * 182.41178 * 20 18 17 22 22 C 1.53175 * 109.03896 * 56.97543 * 21 20 18 23 23 C 1.53090 * 109.16559 * 303.02132 * 22 21 20 24 24 O 1.42902 * 109.47882 * 292.40794 * 18 17 15 25 25 C 1.54103 * 109.87766 * 106.60199 * 17 15 9 26 26 C 1.54809 * 104.18484 * 242.45029 * 25 17 15 27 27 C 1.54992 * 102.09283 * 20.88223 * 26 25 17 28 28 O 1.43743 * 110.00547 * 348.69240 * 17 15 9 29 29 H 0.97006 * 119.99938 * 5.01373 * 1 2 3 30 30 H 1.09008 * 109.47245 * 29.99982 * 10 9 7 31 31 H 1.09002 * 109.47255 * 150.00153 * 10 9 7 32 32 H 1.09000 * 109.46709 * 299.99910 * 11 10 9 33 33 H 1.09002 * 109.46814 * 59.99817 * 11 10 9 34 34 H 0.96707 * 116.99460 * 180.02562 * 14 12 11 35 35 H 1.09007 * 109.51995 * 302.31032 * 20 18 17 36 36 H 1.08999 * 109.52374 * 62.50116 * 20 18 17 37 37 H 1.08999 * 109.54631 * 176.84940 * 21 20 18 38 38 H 1.09002 * 109.54156 * 297.02076 * 21 20 18 39 39 H 1.09001 * 109.52416 * 62.93124 * 22 21 20 40 40 H 1.09001 * 109.52384 * 183.11428 * 22 21 20 41 41 H 1.09001 * 109.47948 * 177.59154 * 23 22 21 42 42 H 1.09000 * 109.47855 * 297.62433 * 23 22 21 43 43 H 1.08998 * 110.48684 * 1.12601 * 25 17 15 44 44 H 1.08995 * 110.48784 * 123.64481 * 25 17 15 45 45 H 1.09006 * 110.90467 * 139.07968 * 26 25 17 46 46 H 1.08998 * 110.91188 * 262.67935 * 26 25 17 47 47 H 1.09005 * 110.61840 * 81.47841 * 27 26 25 48 48 H 1.09005 * 110.62109 * 204.31410 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4402 2.0784 -1.3985 5 1 1.4745 2.6360 0.7548 6 1 3.5723 1.4246 0.6439 7 6 2.0088 -1.2034 0.0005 8 1 1.5410 -2.0971 -0.3854 9 7 3.2880 -1.2562 0.4908 10 6 4.4153 -1.4539 -0.4235 11 6 4.6874 -2.9512 -0.5816 12 6 5.8467 -3.1546 -1.5227 13 8 6.3991 -2.2000 -2.0161 14 8 6.2663 -4.3964 -1.8120 15 6 3.5084 -1.1263 1.8141 16 8 4.6439 -1.0845 2.2385 17 6 2.3441 -1.0329 2.7663 18 6 2.5581 0.1302 3.7370 19 1 1.6569 0.2777 4.3321 20 6 2.8624 1.4055 2.9465 21 6 3.1346 2.5512 3.9260 22 6 4.2871 2.1529 4.8530 23 6 3.9278 0.8488 5.5698 24 8 3.6567 -0.1665 4.6013 25 6 2.2023 -2.3514 3.5514 26 6 0.8106 -2.8903 3.1398 27 6 0.5569 -2.1472 1.8035 28 8 1.1232 -0.8390 2.0327 29 1 -0.4850 0.8369 -0.0734 30 1 4.1744 -1.0238 -1.3958 31 1 5.3013 -0.9644 -0.0192 32 1 4.9284 -3.3813 0.3906 33 1 3.8014 -3.4408 -0.9859 34 1 7.0137 -4.4766 -2.4205 35 1 3.7402 1.2452 2.3204 36 1 2.0075 1.6579 2.3192 37 1 3.4068 3.4488 3.3707 38 1 2.2399 2.7457 4.5173 39 1 5.1937 2.0078 4.2654 40 1 4.4512 2.9399 5.5891 41 1 4.7621 0.5379 6.1986 42 1 3.0446 1.0058 6.1889 43 1 2.9842 -3.0536 3.2622 44 1 2.2384 -2.1623 4.6242 45 1 0.8413 -3.9689 2.9854 46 1 0.0564 -2.6262 3.8811 47 1 1.0690 -2.6487 0.9822 48 1 -0.5118 -2.0753 1.6011 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601072725.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:51 Heat of formation + Delta-G solvation = -163.973820 kcal Electronic energy + Delta-G solvation = -34102.058766 eV Core-core repulsion = 29738.434313 eV Total energy + Delta-G solvation = -4363.624454 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.176 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.39086 -39.89703 -38.36217 -37.12749 -35.94726 -34.93319 -33.31308 -32.43922 -31.55338 -30.93479 -30.55412 -27.95656 -25.26580 -24.43353 -24.08980 -23.23223 -21.88743 -20.77105 -20.27973 -20.02237 -19.06786 -17.87651 -17.13570 -16.35578 -16.33361 -15.81289 -15.67536 -15.31928 -14.99519 -14.74067 -14.49050 -14.23511 -14.07653 -13.80651 -13.67250 -13.21614 -13.09048 -12.84725 -12.71037 -12.40411 -12.28915 -12.09768 -11.92011 -11.48952 -11.34469 -11.30848 -11.17644 -10.98914 -10.83161 -10.80130 -10.71654 -10.42953 -10.36760 -10.29848 -10.07182 -9.87378 -9.79985 -9.56574 -9.18451 -8.83935 -8.44471 -7.63340 -7.32254 -6.35542 -4.08989 2.49747 3.22509 3.26512 3.31321 3.42282 3.67951 4.11962 4.30705 4.52063 4.98290 5.02057 5.08144 5.16910 5.23830 5.36899 5.37196 5.41936 5.52936 5.56167 5.58866 5.67606 5.74965 5.79911 5.90990 5.97472 5.99560 6.09550 6.16673 6.18090 6.21943 6.31092 6.35944 6.41122 6.48005 6.53538 6.55350 6.62189 6.65119 6.77491 6.79936 7.00921 7.24811 7.69880 7.80710 7.88904 8.12046 8.14909 8.45179 9.20459 9.33048 9.80857 10.70492 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.010726 B = 0.005619 C = 0.005262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2609.861954 B = 4982.258382 C = 5319.698447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.835 5.835 2 C 0.140 3.860 3 Si 0.852 3.148 4 H -0.292 1.292 5 H -0.286 1.286 6 H -0.253 1.253 7 C -0.369 4.369 8 H 0.096 0.904 9 N -0.467 5.467 10 C 0.111 3.889 11 C -0.121 4.121 12 C 0.483 3.517 13 O -0.519 6.519 14 O -0.522 6.522 15 C 0.496 3.504 16 O -0.570 6.570 17 C 0.101 3.899 18 C 0.117 3.883 19 H 0.060 0.940 20 C -0.170 4.170 21 C -0.119 4.119 22 C -0.154 4.154 23 C 0.064 3.936 24 O -0.355 6.355 25 C -0.121 4.121 26 C -0.167 4.167 27 C 0.072 3.928 28 O -0.295 6.295 29 H 0.270 0.730 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.101 0.899 33 H 0.108 0.892 34 H 0.403 0.597 35 H 0.088 0.912 36 H 0.078 0.922 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.072 0.928 40 H 0.066 0.934 41 H 0.089 0.911 42 H 0.042 0.958 43 H 0.069 0.931 44 H 0.074 0.926 45 H 0.067 0.933 46 H 0.061 0.939 47 H 0.089 0.911 48 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.368 -3.164 5.499 6.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C -0.072 4.072 3 Si 0.681 3.319 4 H -0.219 1.219 5 H -0.212 1.212 6 H -0.177 1.177 7 C -0.495 4.495 8 H 0.113 0.887 9 N -0.189 5.189 10 C -0.012 4.012 11 C -0.160 4.160 12 C 0.326 3.674 13 O -0.407 6.407 14 O -0.334 6.334 15 C 0.285 3.715 16 O -0.452 6.452 17 C 0.057 3.943 18 C 0.058 3.942 19 H 0.078 0.922 20 C -0.207 4.207 21 C -0.157 4.157 22 C -0.192 4.192 23 C -0.014 4.014 24 O -0.273 6.273 25 C -0.159 4.159 26 C -0.205 4.205 27 C -0.004 4.004 28 O -0.212 6.212 29 H 0.080 0.920 30 H 0.095 0.905 31 H 0.087 0.913 32 H 0.119 0.881 33 H 0.126 0.874 34 H 0.260 0.740 35 H 0.106 0.894 36 H 0.096 0.904 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.090 0.910 40 H 0.084 0.916 41 H 0.107 0.893 42 H 0.061 0.939 43 H 0.087 0.913 44 H 0.093 0.907 45 H 0.086 0.914 46 H 0.080 0.920 47 H 0.106 0.894 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 2.573 -2.712 5.819 6.917 hybrid contribution 0.741 1.122 -0.496 1.433 sum 3.314 -1.590 5.323 6.469 Atomic orbital electron populations 1.69789 1.06255 1.28198 1.42532 1.25248 0.94493 0.97613 0.89833 0.87446 0.82464 0.84934 0.77104 1.21941 1.21246 1.17710 1.18572 0.86916 0.96545 1.47467 0.88685 1.43592 1.06068 1.66120 1.03163 1.21423 0.92688 0.91153 0.95925 1.21789 0.94142 1.02036 0.98036 1.23807 0.84046 0.79720 0.79831 1.90696 1.56582 1.42224 1.51219 1.84591 1.51916 1.32968 1.63922 1.20988 0.89621 0.77050 0.83840 1.90583 1.23536 1.53284 1.77801 1.21829 0.88269 0.94028 0.90189 1.21784 0.88839 0.93222 0.90336 0.92176 1.22792 1.03603 0.95104 0.99190 1.21550 0.98149 0.98335 0.97649 1.22166 0.99610 0.98016 0.99386 1.22473 0.99833 0.88364 0.90684 1.88044 1.51229 1.41780 1.46261 1.22646 0.97496 0.95547 1.00211 1.23357 0.96312 1.00382 1.00412 1.23475 0.98950 0.83827 0.94162 1.89469 1.33772 1.27023 1.70951 0.91965 0.90545 0.91286 0.88093 0.87397 0.73958 0.89366 0.90407 0.92056 0.92155 0.90951 0.91569 0.89296 0.93943 0.91263 0.90741 0.91445 0.91993 0.89360 0.89981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -20.69 12.12 55.50 0.67 -20.02 16 2 C 0.14 3.43 3.07 -17.47 -0.05 3.38 16 3 Si 0.85 20.51 23.21 -169.99 -3.95 16.56 16 4 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 5 H -0.29 -6.82 6.72 56.52 0.38 -6.44 16 6 H -0.25 -6.29 4.89 56.52 0.28 -6.01 16 7 C -0.37 -8.65 5.53 -14.93 -0.08 -8.73 16 8 H 0.10 2.28 6.47 -52.48 -0.34 1.94 16 9 N -0.47 -10.56 1.49 -114.81 -0.17 -10.73 16 10 C 0.11 2.33 4.71 -4.04 -0.02 2.31 16 11 C -0.12 -2.08 6.14 -27.88 -0.17 -2.25 16 12 C 0.48 7.85 8.33 36.01 0.30 8.15 16 13 O -0.52 -9.93 16.74 -18.75 -0.31 -10.24 16 14 O -0.52 -6.61 13.42 -39.26 -0.53 -7.14 16 15 C 0.50 11.47 3.75 -10.98 -0.04 11.43 16 16 O -0.57 -14.34 15.06 -10.64 -0.16 -14.50 16 17 C 0.10 2.12 0.65 -91.19 -0.06 2.07 16 18 C 0.12 2.34 1.97 -26.68 -0.05 2.28 16 19 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 20 C -0.17 -3.52 3.10 -26.60 -0.08 -3.61 16 21 C -0.12 -1.99 6.03 -26.55 -0.16 -2.15 16 22 C -0.15 -2.29 6.14 -26.59 -0.16 -2.46 16 23 C 0.06 0.96 6.84 37.20 0.25 1.21 16 24 O -0.35 -6.87 8.50 -51.42 -0.44 -7.31 16 25 C -0.12 -2.22 5.94 -25.20 -0.15 -2.37 16 26 C -0.17 -2.75 7.15 -24.73 -0.18 -2.93 16 27 C 0.07 1.41 5.54 38.21 0.21 1.62 16 28 O -0.29 -6.50 5.54 -35.23 -0.20 -6.70 16 29 H 0.27 6.55 8.32 -40.82 -0.34 6.21 16 30 H 0.08 1.62 8.00 -51.92 -0.42 1.21 16 31 H 0.07 1.56 7.32 -51.93 -0.38 1.18 16 32 H 0.10 1.73 8.14 -51.93 -0.42 1.31 16 33 H 0.11 1.72 8.14 -51.93 -0.42 1.30 16 34 H 0.40 3.21 9.10 45.56 0.41 3.62 16 35 H 0.09 2.09 4.58 -51.93 -0.24 1.85 16 36 H 0.08 1.74 4.25 -51.93 -0.22 1.52 16 37 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 40 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 42 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 43 H 0.07 1.30 7.69 -51.93 -0.40 0.90 16 44 H 0.07 1.29 7.28 -51.93 -0.38 0.91 16 45 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 46 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 47 H 0.09 1.84 4.82 -51.93 -0.25 1.59 16 48 H 0.08 1.64 8.07 -51.93 -0.42 1.22 16 LS Contribution 355.15 15.07 5.35 5.35 Total: -1.00 -29.65 355.15 -6.73 -36.38 By element: Atomic # 1 Polarization: 16.93 SS G_CDS: -6.56 Total: 10.37 kcal Atomic # 6 Polarization: 8.41 SS G_CDS: -0.45 Total: 7.96 kcal Atomic # 7 Polarization: -31.25 SS G_CDS: 0.50 Total: -30.75 kcal Atomic # 8 Polarization: -44.25 SS G_CDS: -1.63 Total: -45.88 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -3.95 Total: 16.56 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -29.65 -6.73 -36.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601072725.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.593 kcal (2) G-P(sol) polarization free energy of solvation -29.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds