Wall clock time and date at job start Sat Apr 11 2020 06:19:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86807 * 119.99722 * 2 1 4 4 H 1.48498 * 109.47140 * 240.00043 * 3 2 1 5 5 H 1.48507 * 109.46869 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47165 * 119.99523 * 3 2 1 7 7 C 1.38946 * 120.00648 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00281 * 159.53538 * 7 2 1 9 9 N 1.37098 * 119.99520 * 339.53436 * 7 2 1 10 10 C 1.46498 * 120.00203 * 322.66407 * 9 7 2 11 11 C 1.53002 * 109.47084 * 264.55617 * 10 9 7 12 12 C 1.50698 * 109.47186 * 180.02562 * 11 10 9 13 13 O 1.20831 * 119.99940 * 359.97438 * 12 11 10 14 14 O 1.34227 * 120.00273 * 180.02562 * 12 11 10 15 15 C 1.34777 * 119.99942 * 142.66585 * 9 7 2 16 16 O 1.21291 * 120.00268 * 184.80791 * 15 9 7 17 17 C 1.50699 * 119.99877 * 4.80213 * 15 9 7 18 18 C 1.53001 * 110.33293 * 299.80329 * 17 15 9 19 19 H 1.09002 * 109.47801 * 60.72465 * 18 17 15 20 20 C 1.53094 * 109.48083 * 300.70075 * 18 17 15 21 21 C 1.53178 * 109.16454 * 182.40618 * 20 18 17 22 22 C 1.53181 * 109.03611 * 56.97866 * 21 20 18 23 23 C 1.53092 * 109.16267 * 303.02417 * 22 21 20 24 24 O 1.42894 * 109.41766 * 57.60631 * 23 22 21 25 25 C 1.54475 * 110.37368 * 62.05328 * 17 15 9 26 26 C 1.54513 * 104.06345 * 94.85377 * 25 17 15 27 27 C 1.54488 * 104.05875 * 359.97438 * 26 25 17 28 28 O 1.44424 * 104.80338 * 23.98233 * 27 26 25 29 29 H 0.97003 * 120.00201 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.47403 * 144.55393 * 10 9 7 31 31 H 1.08996 * 109.47273 * 24.55809 * 10 9 7 32 32 H 1.09000 * 109.47183 * 59.99642 * 11 10 9 33 33 H 1.09003 * 109.47006 * 299.99587 * 11 10 9 34 34 H 0.96696 * 117.00089 * 179.97438 * 14 12 11 35 35 H 1.08994 * 109.52705 * 302.31444 * 20 18 17 36 36 H 1.09003 * 109.52036 * 62.44338 * 20 18 17 37 37 H 1.08999 * 109.54907 * 176.84791 * 21 20 18 38 38 H 1.09000 * 109.54548 * 297.11589 * 21 20 18 39 39 H 1.09008 * 109.51799 * 62.92758 * 22 21 20 40 40 H 1.08998 * 109.52521 * 183.04907 * 22 21 20 41 41 H 1.09003 * 109.47774 * 177.58764 * 23 22 21 42 42 H 1.08994 * 109.47965 * 297.60678 * 23 22 21 43 43 H 1.08997 * 110.51380 * 213.49725 * 25 17 15 44 44 H 1.09001 * 110.51180 * 336.21092 * 25 17 15 45 45 H 1.08991 * 110.51436 * 118.64343 * 26 25 17 46 46 H 1.08997 * 110.51288 * 241.22463 * 26 25 17 47 47 H 1.09006 * 110.36739 * 142.81134 * 27 26 25 48 48 H 1.08993 * 110.37372 * 265.14592 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1018 1.6966 -1.2125 5 1 1.2829 2.7465 -0.0006 6 1 3.1017 1.6966 1.2125 7 6 2.0090 -1.2032 -0.0005 8 1 3.0378 -1.2325 -0.3275 9 7 1.3884 -2.3533 0.4141 10 6 0.4438 -2.3133 1.5331 11 6 1.1705 -2.6841 2.8275 12 6 0.1987 -2.6437 3.9785 13 8 -0.9566 -2.3481 3.7837 14 8 0.6166 -2.9349 5.2204 15 6 1.6474 -3.5206 -0.2078 16 8 1.0348 -4.5210 0.1005 17 6 2.6982 -3.5828 -1.2863 18 6 2.3340 -2.6439 -2.4381 19 1 2.2791 -1.6198 -2.0688 20 6 0.9772 -3.0507 -3.0189 21 6 0.6476 -2.1446 -4.2092 22 6 1.7754 -2.2452 -5.2409 23 6 3.1014 -1.8695 -4.5743 24 8 3.3320 -2.7303 -3.4572 25 6 4.0831 -3.2145 -0.7097 26 6 4.7191 -4.5786 -0.3601 27 6 3.6427 -5.6096 -0.7663 28 8 2.8458 -4.9370 -1.7655 29 1 -0.4850 0.8401 -0.0004 30 1 -0.3630 -3.0238 1.3531 31 1 0.0300 -1.3091 1.6237 32 1 1.9773 -1.9736 3.0075 33 1 1.5843 -3.6885 2.7370 34 1 -0.0431 -2.8952 5.9262 35 1 1.0194 -4.0878 -3.3514 36 1 0.2072 -2.9442 -2.2548 37 1 -0.2907 -2.4645 -4.6623 38 1 0.5564 -1.1134 -3.8682 39 1 1.8338 -3.2662 -5.6183 40 1 1.5755 -1.5625 -6.0668 41 1 3.9137 -1.9807 -5.2926 42 1 3.0566 -0.8353 -4.2333 43 1 4.6820 -2.6943 -1.4571 44 1 3.9736 -2.6034 0.1863 45 1 5.6323 -4.7328 -0.9348 46 1 4.9261 -4.6410 0.7082 47 1 4.1098 -6.4992 -1.1892 48 1 3.0280 -5.8753 0.0936 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601072727.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:52 Heat of formation + Delta-G solvation = -232.721933 kcal Electronic energy + Delta-G solvation = -33416.217906 eV Core-core repulsion = 29049.612310 eV Total energy + Delta-G solvation = -4366.605596 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.176 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.98077 -41.23338 -39.74664 -38.98080 -37.20883 -36.80945 -34.50652 -33.86753 -33.70842 -32.75737 -31.87932 -29.45046 -27.15189 -26.30118 -25.60396 -24.49099 -23.38962 -22.34183 -21.94328 -20.97790 -20.80184 -19.41370 -18.85951 -18.03012 -17.54763 -17.37470 -17.00433 -16.89288 -16.67904 -16.29664 -16.09734 -15.99579 -15.53533 -15.33374 -15.07447 -14.79141 -14.48558 -14.33555 -14.23598 -14.08645 -13.75388 -13.53576 -13.40409 -13.18013 -12.95008 -12.82264 -12.57828 -12.52704 -12.31085 -12.29150 -12.11137 -12.01490 -11.96323 -11.90209 -11.70798 -11.66250 -11.51877 -11.18462 -11.12137 -10.80352 -10.22425 -9.99637 -9.52553 -8.28999 -6.05857 1.17360 1.44270 1.52704 1.59391 1.81752 1.99813 2.36374 2.73335 2.94205 3.03641 3.22267 3.62843 3.81850 3.95128 3.96742 4.02232 4.07679 4.08400 4.17254 4.18669 4.32688 4.40087 4.44319 4.48446 4.63028 4.68758 4.71709 4.80719 4.83640 4.86719 4.93116 4.95116 4.98290 4.99592 5.07710 5.15387 5.20879 5.23688 5.27501 5.34387 5.43880 5.50345 5.58028 5.90843 5.94485 6.38098 6.41379 6.98516 7.10671 7.50939 7.94043 8.73029 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.010303 B = 0.005541 C = 0.004424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2716.948031 B = 5052.212540 C = 6327.314103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.014 3.986 3 Si 0.964 3.036 4 H -0.257 1.257 5 H -0.291 1.291 6 H -0.261 1.261 7 C -0.362 4.362 8 H 0.116 0.884 9 N -0.436 5.436 10 C 0.135 3.865 11 C -0.117 4.117 12 C 0.494 3.506 13 O -0.550 6.550 14 O -0.506 6.506 15 C 0.461 3.539 16 O -0.621 6.621 17 C 0.117 3.883 18 C 0.113 3.887 19 H 0.100 0.900 20 C -0.135 4.135 21 C -0.116 4.116 22 C -0.146 4.146 23 C 0.053 3.947 24 O -0.384 6.384 25 C -0.138 4.138 26 C -0.143 4.143 27 C 0.035 3.965 28 O -0.365 6.365 29 H 0.271 0.729 30 H 0.028 0.972 31 H 0.096 0.904 32 H 0.123 0.877 33 H 0.100 0.900 34 H 0.427 0.573 35 H 0.052 0.948 36 H 0.033 0.967 37 H 0.068 0.932 38 H 0.057 0.943 39 H 0.067 0.933 40 H 0.097 0.903 41 H 0.118 0.882 42 H 0.051 0.949 43 H 0.095 0.905 44 H 0.087 0.913 45 H 0.097 0.903 46 H 0.087 0.913 47 H 0.110 0.890 48 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.677 -0.488 -1.337 9.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.191 4.191 3 Si 0.788 3.212 4 H -0.181 1.181 5 H -0.217 1.217 6 H -0.185 1.185 7 C -0.488 4.488 8 H 0.133 0.867 9 N -0.155 5.155 10 C 0.011 3.989 11 C -0.156 4.156 12 C 0.338 3.662 13 O -0.441 6.441 14 O -0.320 6.320 15 C 0.250 3.750 16 O -0.507 6.507 17 C 0.074 3.926 18 C 0.055 3.945 19 H 0.118 0.882 20 C -0.173 4.173 21 C -0.153 4.153 22 C -0.183 4.183 23 C -0.023 4.023 24 O -0.303 6.303 25 C -0.176 4.176 26 C -0.180 4.180 27 C -0.041 4.041 28 O -0.283 6.283 29 H 0.081 0.919 30 H 0.047 0.953 31 H 0.114 0.886 32 H 0.141 0.859 33 H 0.118 0.882 34 H 0.288 0.712 35 H 0.071 0.929 36 H 0.052 0.948 37 H 0.087 0.913 38 H 0.076 0.924 39 H 0.086 0.914 40 H 0.115 0.885 41 H 0.136 0.864 42 H 0.069 0.931 43 H 0.113 0.887 44 H 0.106 0.894 45 H 0.115 0.885 46 H 0.105 0.895 47 H 0.128 0.872 48 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 9.254 -0.988 -1.726 9.466 hybrid contribution -1.261 0.838 0.848 1.735 sum 7.993 -0.150 -0.878 8.043 Atomic orbital electron populations 1.70063 1.07829 1.28803 1.45016 1.26124 0.95427 1.02539 0.95055 0.85413 0.78334 0.77307 0.80176 1.18097 1.21701 1.18520 1.19893 0.97314 0.84579 1.47056 0.86684 1.43513 1.38910 1.06622 1.26409 1.20899 0.90822 1.03037 0.84180 1.21638 0.98316 1.05472 0.90181 1.23378 0.87597 0.71123 0.84120 1.90713 1.21751 1.46081 1.85558 1.84498 1.47828 1.81664 1.18011 1.21147 0.85902 0.84162 0.83779 1.90516 1.54207 1.37310 1.68712 1.21949 0.94992 0.83705 0.91966 1.22108 0.86937 0.99120 0.86289 0.88222 1.21906 0.97392 0.99666 0.98305 1.21532 0.99395 0.99093 0.95321 1.22147 0.94825 1.03035 0.98312 1.22797 0.98133 0.93338 0.88051 1.87845 1.46943 1.65139 1.30378 1.23004 0.93230 0.98980 1.02372 1.22927 0.99120 0.93077 1.02887 1.23574 0.91733 0.97027 0.91815 1.89116 1.73462 1.22122 1.43571 0.91899 0.95340 0.88577 0.85862 0.88207 0.71164 0.92945 0.94822 0.91327 0.92435 0.91404 0.88462 0.86374 0.93107 0.88664 0.89431 0.88492 0.89484 0.87239 0.93921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -44.48 11.47 21.66 0.25 -44.23 16 2 C 0.01 0.62 4.93 84.93 0.42 1.04 16 3 Si 0.96 35.70 29.60 68.60 2.03 37.73 16 4 H -0.26 -8.96 7.11 99.48 0.71 -8.25 16 5 H -0.29 -11.16 7.11 99.48 0.71 -10.45 16 6 H -0.26 -9.24 7.11 99.48 0.71 -8.53 16 7 C -0.36 -16.19 5.79 84.04 0.49 -15.70 16 8 H 0.12 4.77 4.60 -2.91 -0.01 4.76 16 9 N -0.44 -20.51 2.49 -635.56 -1.58 -22.09 16 10 C 0.13 6.40 4.22 86.38 0.36 6.77 16 11 C -0.12 -4.41 6.10 29.85 0.18 -4.23 16 12 C 0.49 17.39 8.33 71.24 0.59 17.98 16 13 O -0.55 -23.39 16.74 21.95 0.37 -23.03 16 14 O -0.51 -12.88 13.42 -51.38 -0.69 -13.57 16 15 C 0.46 22.08 4.95 87.66 0.43 22.52 16 16 O -0.62 -33.61 15.06 15.32 0.23 -33.38 16 17 C 0.12 4.85 0.30 -11.04 0.00 4.85 16 18 C 0.11 4.56 1.74 30.63 0.05 4.61 16 19 H 0.10 4.31 5.14 -2.39 -0.01 4.30 16 20 C -0.13 -5.66 5.04 30.69 0.15 -5.51 16 21 C -0.12 -3.89 6.03 30.71 0.19 -3.71 16 22 C -0.15 -3.86 6.14 30.69 0.19 -3.67 16 23 C 0.05 1.45 6.84 72.01 0.49 1.94 16 24 O -0.38 -13.60 9.39 -139.63 -1.31 -14.91 16 25 C -0.14 -4.70 4.85 31.61 0.15 -4.54 16 26 C -0.14 -4.05 7.09 31.61 0.22 -3.83 16 27 C 0.03 1.20 7.17 72.49 0.52 1.72 16 28 O -0.36 -15.50 10.12 -124.38 -1.26 -16.75 16 29 H 0.27 13.18 8.31 -92.71 -0.77 12.41 16 30 H 0.03 1.52 7.48 -2.39 -0.02 1.50 16 31 H 0.10 4.94 5.50 -2.39 -0.01 4.93 16 32 H 0.12 4.16 8.14 -2.39 -0.02 4.14 16 33 H 0.10 3.70 8.14 -2.39 -0.02 3.68 16 34 H 0.43 6.61 9.10 -74.06 -0.67 5.94 16 35 H 0.05 2.29 7.75 -2.39 -0.02 2.27 16 36 H 0.03 1.66 7.34 -2.39 -0.02 1.64 16 37 H 0.07 2.13 8.14 -2.39 -0.02 2.12 16 38 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.07 1.81 8.14 -2.38 -0.02 1.79 16 40 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 41 H 0.12 2.48 8.14 -2.39 -0.02 2.46 16 42 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.09 3.03 7.21 -2.39 -0.02 3.02 16 44 H 0.09 3.03 5.95 -2.39 -0.01 3.01 16 45 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 46 H 0.09 2.17 8.14 -2.39 -0.02 2.16 16 47 H 0.11 3.05 8.14 -2.38 -0.02 3.03 16 48 H 0.04 1.63 7.12 -2.39 -0.02 1.61 16 Total: -1.00 -67.72 374.19 2.80 -64.92 By element: Atomic # 1 Polarization: 44.76 SS G_CDS: 0.32 Total: 45.08 kcal Atomic # 6 Polarization: 15.79 SS G_CDS: 4.45 Total: 20.24 kcal Atomic # 7 Polarization: -64.99 SS G_CDS: -1.34 Total: -66.32 kcal Atomic # 8 Polarization: -98.98 SS G_CDS: -2.66 Total: -101.64 kcal Atomic # 14 Polarization: 35.70 SS G_CDS: 2.03 Total: 37.73 kcal Total: -67.72 2.80 -64.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601072727.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -167.806 kcal (2) G-P(sol) polarization free energy of solvation -67.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -235.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -232.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds