Wall clock time and date at job start Sat Apr 11 2020 06:19:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86797 * 120.00044 * 2 1 4 4 H 1.48502 * 109.47189 * 86.23233 * 3 2 1 5 5 H 1.48501 * 109.46864 * 206.23330 * 3 2 1 6 6 H 1.48504 * 109.47177 * 326.23022 * 3 2 1 7 7 C 1.38815 * 119.99729 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00084 * 163.00210 * 7 2 1 9 9 N 1.36937 * 119.99959 * 342.99586 * 7 2 1 10 10 C 1.46929 * 120.63206 * 331.86470 * 9 7 2 11 11 C 1.52764 * 109.00608 * 233.58578 * 10 9 7 12 12 C 1.53046 * 109.37895 * 305.58439 * 11 10 9 13 13 O 1.45204 * 109.44779 * 181.25559 * 12 11 10 14 14 C 1.34228 * 116.99749 * 89.93739 * 13 12 11 15 15 O 1.20827 * 120.00378 * 0.02562 * 14 13 12 16 16 C 1.50705 * 120.00005 * 180.02562 * 14 13 12 17 17 H 1.09004 * 110.80077 * 303.63328 * 16 14 13 18 18 C 1.54997 * 110.90648 * 67.29408 * 16 14 13 19 19 O 1.44375 * 103.48954 * 155.22173 * 18 16 14 20 20 C 1.43744 * 106.97630 * 319.94255 * 19 18 16 21 21 H 1.09004 * 110.00355 * 267.01447 * 20 19 18 22 22 C 1.53006 * 109.87779 * 145.93907 * 20 19 18 23 23 C 1.52996 * 109.47329 * 67.16814 * 22 20 19 24 24 C 1.50695 * 109.46913 * 180.02562 * 23 22 20 25 25 O 1.20829 * 120.00424 * 359.97438 * 24 23 22 26 26 O 1.34233 * 120.00073 * 179.97438 * 24 23 22 27 27 C 1.54100 * 107.29294 * 26.51197 * 20 19 18 28 28 C 1.53039 * 109.53618 * 61.24509 * 12 11 10 29 29 C 1.46920 * 120.62822 * 152.14133 * 9 7 2 30 30 H 0.96996 * 119.99625 * 0.02562 * 1 2 3 31 31 H 1.09002 * 109.58621 * 353.41496 * 10 9 7 32 32 H 1.08991 * 109.58638 * 113.84202 * 10 9 7 33 33 H 1.08996 * 109.56533 * 185.55583 * 11 10 9 34 34 H 1.08997 * 109.36277 * 65.49703 * 11 10 9 35 35 H 1.09000 * 109.46044 * 301.22118 * 12 11 10 36 36 H 1.09002 * 110.62210 * 273.72859 * 18 16 14 37 37 H 1.09000 * 110.61624 * 36.72353 * 18 16 14 38 38 H 1.09000 * 109.46719 * 187.17402 * 22 20 19 39 39 H 1.08999 * 109.46912 * 307.16538 * 22 20 19 40 40 H 1.09005 * 109.47013 * 299.99971 * 23 22 20 41 41 H 1.08999 * 109.47349 * 59.99991 * 23 22 20 42 42 H 0.96697 * 117.00354 * 179.97438 * 26 24 23 43 43 H 1.09002 * 110.48713 * 239.29274 * 27 20 19 44 44 H 1.09007 * 110.59590 * 116.70112 * 27 20 19 45 45 H 1.09003 * 109.49259 * 178.68106 * 28 12 11 46 46 H 1.09000 * 109.52571 * 58.60522 * 28 12 11 47 47 H 1.09006 * 109.58812 * 246.15431 * 29 9 7 48 48 H 1.09004 * 109.58737 * 6.44239 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4181 2.0924 1.3971 5 1 3.5854 1.4184 -0.6189 6 1 1.4898 2.6284 -0.7783 7 6 2.0103 -1.2022 -0.0005 8 1 3.0549 -1.2226 -0.2740 9 7 1.3704 -2.3623 0.3458 10 6 0.2272 -2.3400 1.2685 11 6 0.4935 -3.3150 2.4140 12 6 0.8119 -4.6977 1.8405 13 8 1.0360 -5.6326 2.9287 14 6 -0.0350 -6.2951 3.3931 15 8 -1.1236 -6.1007 2.9063 16 6 0.1204 -7.2815 4.5219 17 1 0.8541 -8.0468 4.2689 18 6 0.5047 -6.5594 5.8385 19 8 0.0382 -7.4606 6.8654 20 6 -1.2313 -7.9740 6.4282 21 1 -2.0390 -7.3593 6.8255 22 6 -1.3980 -9.4200 6.9000 23 6 -1.5121 -9.4488 8.4254 24 6 -1.6757 -10.8730 8.8900 25 8 -1.6992 -11.7726 8.0837 26 8 -1.7954 -11.1422 10.1996 27 6 -1.2411 -7.9208 4.8881 28 6 2.0697 -4.6145 0.9726 29 6 1.8178 -3.6536 -0.1936 30 1 -0.4849 0.8400 -0.0004 31 1 0.1002 -1.3341 1.6687 32 1 -0.6761 -2.6413 0.7383 33 1 -0.3888 -3.3797 3.0508 34 1 1.3409 -2.9605 3.0007 35 1 -0.0260 -5.0409 1.2337 36 1 1.5850 -6.4293 5.9037 37 1 -0.0038 -5.5980 5.9115 38 1 -2.3007 -9.8438 6.4599 39 1 -0.5329 -10.0056 6.5891 40 1 -0.6094 -9.0249 8.8653 41 1 -2.3773 -8.8632 8.7362 42 1 -1.8986 -12.0707 10.4493 43 1 -2.0626 -7.2986 4.5331 44 1 -1.3158 -8.9248 4.4702 45 1 2.3092 -5.6041 0.5835 46 1 2.9027 -4.2481 1.5726 47 1 1.0467 -4.0643 -0.8455 48 1 2.7386 -3.5138 -0.7600 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605586344.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:57 Heat of formation + Delta-G solvation = -215.985112 kcal Electronic energy + Delta-G solvation = -29792.763009 eV Core-core repulsion = 25426.883176 eV Total energy + Delta-G solvation = -4365.879833 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.176 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.96707 -40.59919 -39.47129 -37.51020 -36.62585 -35.90203 -34.19011 -32.92018 -32.50889 -30.37838 -29.83909 -29.41478 -25.54688 -25.21328 -24.05247 -22.39920 -22.21134 -21.65005 -21.11740 -20.18248 -19.36434 -18.51585 -17.96896 -17.18214 -17.03212 -16.78748 -16.47571 -16.14828 -15.68787 -15.39074 -15.12005 -14.74630 -14.10520 -13.86588 -13.82792 -13.63321 -13.58339 -13.31145 -13.01877 -12.87744 -12.65651 -12.48472 -12.35342 -11.98800 -11.81636 -11.61283 -11.53064 -11.43483 -11.32431 -11.19148 -11.09236 -10.96949 -10.79065 -10.73443 -10.37567 -10.32907 -10.24288 -10.09449 -9.95022 -9.71704 -9.46374 -8.52416 -6.77107 -5.84678 -3.28017 1.78696 2.21370 2.58977 2.69969 3.35257 3.42385 3.43732 3.49696 3.99340 4.22646 4.42244 4.44895 4.53451 4.58955 4.60726 4.80722 4.92328 5.00287 5.11893 5.18669 5.22147 5.33426 5.33800 5.37293 5.37520 5.48717 5.54703 5.58311 5.66798 5.68598 5.77419 5.96656 6.07629 6.15589 6.21814 6.40142 6.44898 6.46279 6.54269 6.64504 6.80586 6.88733 7.26280 7.45573 7.56489 7.74764 7.85374 8.38288 9.14170 9.77001 10.33175 11.24382 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.030685 B = 0.001789 C = 0.001754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.278481 B =15651.244279 C =15956.062905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.003 3.997 3 Si 0.904 3.096 4 H -0.287 1.287 5 H -0.278 1.278 6 H -0.291 1.291 7 C -0.256 4.256 8 H 0.068 0.932 9 N -0.592 5.592 10 C 0.174 3.826 11 C -0.153 4.153 12 C 0.097 3.903 13 O -0.355 6.355 14 C 0.467 3.533 15 O -0.503 6.503 16 C -0.120 4.120 17 H 0.121 0.879 18 C 0.065 3.935 19 O -0.367 6.367 20 C 0.076 3.924 21 H 0.078 0.922 22 C -0.108 4.108 23 C -0.113 4.113 24 C 0.478 3.522 25 O -0.518 6.518 26 O -0.519 6.519 27 C -0.142 4.142 28 C -0.128 4.128 29 C 0.148 3.852 30 H 0.255 0.745 31 H 0.094 0.906 32 H 0.022 0.978 33 H 0.053 0.947 34 H 0.065 0.935 35 H 0.079 0.921 36 H 0.109 0.891 37 H 0.070 0.930 38 H 0.087 0.913 39 H 0.083 0.917 40 H 0.115 0.885 41 H 0.107 0.893 42 H 0.410 0.590 43 H 0.100 0.900 44 H 0.089 0.911 45 H 0.059 0.941 46 H 0.071 0.929 47 H 0.021 0.979 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.176 -19.910 17.245 26.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.196 4.196 3 Si 0.734 3.266 4 H -0.214 1.214 5 H -0.203 1.203 6 H -0.217 1.217 7 C -0.386 4.386 8 H 0.086 0.914 9 N -0.315 5.315 10 C 0.048 3.952 11 C -0.192 4.192 12 C 0.044 3.956 13 O -0.272 6.272 14 C 0.309 3.691 15 O -0.391 6.391 16 C -0.139 4.139 17 H 0.139 0.861 18 C -0.012 4.012 19 O -0.286 6.286 20 C 0.019 3.981 21 H 0.096 0.904 22 C -0.145 4.145 23 C -0.150 4.150 24 C 0.321 3.679 25 O -0.406 6.406 26 O -0.331 6.331 27 C -0.180 4.180 28 C -0.167 4.167 29 C 0.021 3.979 30 H 0.065 0.935 31 H 0.112 0.888 32 H 0.040 0.960 33 H 0.072 0.928 34 H 0.083 0.917 35 H 0.097 0.903 36 H 0.127 0.873 37 H 0.088 0.912 38 H 0.105 0.895 39 H 0.101 0.899 40 H 0.133 0.867 41 H 0.125 0.875 42 H 0.268 0.732 43 H 0.119 0.881 44 H 0.108 0.892 45 H 0.077 0.923 46 H 0.089 0.911 47 H 0.039 0.961 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.454 -19.540 16.894 25.946 hybrid contribution 0.101 0.276 -0.100 0.311 sum -2.353 -19.263 16.793 25.664 Atomic orbital electron populations 1.70033 1.05305 1.25661 1.53598 1.25078 0.95312 0.98546 1.00625 0.86244 0.79152 0.83530 0.77646 1.21410 1.20318 1.21730 1.19210 0.92689 0.84667 1.41993 0.91424 1.44103 1.35806 1.01625 1.49919 1.20679 0.88892 0.98076 0.87546 1.22594 1.00866 0.94610 1.01156 1.22980 0.99734 0.87447 0.85470 1.86529 1.37520 1.52443 1.50659 1.23045 0.83019 0.79876 0.83142 1.90662 1.27436 1.63533 1.57475 1.22580 1.00730 0.97123 0.93485 0.86089 1.23463 1.01624 0.92797 0.83321 1.88890 1.35394 1.61713 1.42651 1.22805 0.87364 0.94606 0.93344 0.90418 1.21674 1.04461 0.95480 0.92909 1.21378 1.06305 0.89748 0.97592 1.23653 0.71543 0.92970 0.79710 1.90738 1.46306 1.48578 1.54995 1.84551 1.84705 1.36292 1.27564 1.23033 0.96930 1.03075 0.94957 1.22233 0.96277 1.00099 0.98112 1.20891 0.98344 0.86530 0.92136 0.93507 0.88815 0.96005 0.92822 0.91652 0.90308 0.87250 0.91183 0.89480 0.89863 0.86726 0.87494 0.73170 0.88133 0.89235 0.92269 0.91075 0.96098 0.91736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.95 11.20 55.49 0.62 -25.33 16 2 C 0.00 0.09 4.91 -17.43 -0.09 0.00 16 3 Si 0.90 21.39 29.59 -169.99 -5.03 16.36 16 4 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 7 C -0.26 -6.91 9.58 -15.06 -0.14 -7.05 16 8 H 0.07 1.78 7.88 -52.49 -0.41 1.37 16 9 N -0.59 -14.63 3.00 -172.58 -0.52 -15.15 16 10 C 0.17 4.16 5.28 -3.93 -0.02 4.14 16 11 C -0.15 -3.01 5.70 -26.83 -0.15 -3.16 16 12 C 0.10 1.74 2.42 -26.69 -0.06 1.68 16 13 O -0.35 -5.53 9.88 -39.25 -0.39 -5.92 16 14 C 0.47 6.62 7.25 36.01 0.26 6.88 16 15 O -0.50 -8.58 14.67 -18.75 -0.28 -8.86 16 16 C -0.12 -1.19 3.63 -89.77 -0.33 -1.52 16 17 H 0.12 1.01 8.14 -51.93 -0.42 0.59 16 18 C 0.06 0.60 7.16 38.21 0.27 0.87 16 19 O -0.37 -3.35 10.84 -35.23 -0.38 -3.73 16 20 C 0.08 0.58 3.41 -26.15 -0.09 0.49 16 21 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 22 C -0.11 -0.73 3.99 -26.73 -0.11 -0.84 16 23 C -0.11 -0.65 5.73 -27.89 -0.16 -0.81 16 24 C 0.48 3.53 8.33 36.00 0.30 3.83 16 25 O -0.52 -5.50 16.74 -18.75 -0.31 -5.81 16 26 O -0.52 -2.83 13.42 -39.27 -0.53 -3.36 16 27 C -0.14 -1.25 6.06 -25.21 -0.15 -1.41 16 28 C -0.13 -2.21 5.74 -26.61 -0.15 -2.37 16 29 C 0.15 3.02 6.52 -3.71 -0.02 3.00 16 30 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 31 H 0.09 2.49 6.06 -51.93 -0.31 2.17 16 32 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 35 H 0.08 1.51 7.16 -51.93 -0.37 1.14 16 36 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.07 0.69 8.04 -51.93 -0.42 0.27 16 38 H 0.09 0.57 8.10 -51.93 -0.42 0.15 16 39 H 0.08 0.64 8.10 -51.93 -0.42 0.22 16 40 H 0.11 0.64 7.91 -51.93 -0.41 0.23 16 41 H 0.11 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.41 0.64 9.10 45.56 0.41 1.05 16 43 H 0.10 1.03 6.86 -51.93 -0.36 0.67 16 44 H 0.09 0.69 7.70 -51.93 -0.40 0.29 16 45 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 46 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 47 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.06 1.26 7.93 -51.93 -0.41 0.85 16 LS Contribution 390.94 15.07 5.89 5.89 Total: -1.00 -33.42 390.94 -8.45 -41.87 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: -6.89 Total: 0.28 kcal Atomic # 6 Polarization: 4.39 SS G_CDS: -0.64 Total: 3.74 kcal Atomic # 7 Polarization: -40.58 SS G_CDS: 0.10 Total: -40.47 kcal Atomic # 8 Polarization: -25.79 SS G_CDS: -1.89 Total: -27.67 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.03 Total: 16.36 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.42 -8.45 -41.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605586344.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -174.110 kcal (2) G-P(sol) polarization free energy of solvation -33.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -207.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -215.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds