Wall clock time and date at job start Sat Apr 11 2020 06:19:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86797 * 120.00044 * 2 1 4 4 H 1.48502 * 109.47189 * 86.23233 * 3 2 1 5 5 H 1.48501 * 109.46864 * 206.23330 * 3 2 1 6 6 H 1.48504 * 109.47177 * 326.23022 * 3 2 1 7 7 C 1.38815 * 119.99729 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00084 * 163.00210 * 7 2 1 9 9 N 1.36937 * 119.99959 * 342.99586 * 7 2 1 10 10 C 1.46929 * 120.63206 * 331.86470 * 9 7 2 11 11 C 1.52764 * 109.00608 * 233.58578 * 10 9 7 12 12 C 1.53046 * 109.37895 * 305.58439 * 11 10 9 13 13 O 1.45204 * 109.44779 * 181.25559 * 12 11 10 14 14 C 1.34228 * 116.99749 * 89.93739 * 13 12 11 15 15 O 1.20827 * 120.00378 * 0.02562 * 14 13 12 16 16 C 1.50705 * 120.00005 * 180.02562 * 14 13 12 17 17 H 1.09004 * 110.80077 * 303.63328 * 16 14 13 18 18 C 1.54997 * 110.90648 * 67.29408 * 16 14 13 19 19 O 1.44375 * 103.48954 * 155.22173 * 18 16 14 20 20 C 1.43744 * 106.97630 * 319.94255 * 19 18 16 21 21 H 1.09004 * 110.00355 * 267.01447 * 20 19 18 22 22 C 1.53006 * 109.87779 * 145.93907 * 20 19 18 23 23 C 1.52996 * 109.47329 * 67.16814 * 22 20 19 24 24 C 1.50695 * 109.46913 * 180.02562 * 23 22 20 25 25 O 1.20829 * 120.00424 * 359.97438 * 24 23 22 26 26 O 1.34233 * 120.00073 * 179.97438 * 24 23 22 27 27 C 1.54100 * 107.29294 * 26.51197 * 20 19 18 28 28 C 1.53039 * 109.53618 * 61.24509 * 12 11 10 29 29 C 1.46920 * 120.62822 * 152.14133 * 9 7 2 30 30 H 0.96996 * 119.99625 * 0.02562 * 1 2 3 31 31 H 1.09002 * 109.58621 * 353.41496 * 10 9 7 32 32 H 1.08991 * 109.58638 * 113.84202 * 10 9 7 33 33 H 1.08996 * 109.56533 * 185.55583 * 11 10 9 34 34 H 1.08997 * 109.36277 * 65.49703 * 11 10 9 35 35 H 1.09000 * 109.46044 * 301.22118 * 12 11 10 36 36 H 1.09002 * 110.62210 * 273.72859 * 18 16 14 37 37 H 1.09000 * 110.61624 * 36.72353 * 18 16 14 38 38 H 1.09000 * 109.46719 * 187.17402 * 22 20 19 39 39 H 1.08999 * 109.46912 * 307.16538 * 22 20 19 40 40 H 1.09005 * 109.47013 * 299.99971 * 23 22 20 41 41 H 1.08999 * 109.47349 * 59.99991 * 23 22 20 42 42 H 0.96697 * 117.00354 * 179.97438 * 26 24 23 43 43 H 1.09002 * 110.48713 * 239.29274 * 27 20 19 44 44 H 1.09007 * 110.59590 * 116.70112 * 27 20 19 45 45 H 1.09003 * 109.49259 * 178.68106 * 28 12 11 46 46 H 1.09000 * 109.52571 * 58.60522 * 28 12 11 47 47 H 1.09006 * 109.58812 * 246.15431 * 29 9 7 48 48 H 1.09004 * 109.58737 * 6.44239 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4181 2.0924 1.3971 5 1 3.5854 1.4184 -0.6189 6 1 1.4898 2.6284 -0.7783 7 6 2.0103 -1.2022 -0.0005 8 1 3.0549 -1.2226 -0.2740 9 7 1.3704 -2.3623 0.3458 10 6 0.2272 -2.3400 1.2685 11 6 0.4935 -3.3150 2.4140 12 6 0.8119 -4.6977 1.8405 13 8 1.0360 -5.6326 2.9287 14 6 -0.0350 -6.2951 3.3931 15 8 -1.1236 -6.1007 2.9063 16 6 0.1204 -7.2815 4.5219 17 1 0.8541 -8.0468 4.2689 18 6 0.5047 -6.5594 5.8385 19 8 0.0382 -7.4606 6.8654 20 6 -1.2313 -7.9740 6.4282 21 1 -2.0390 -7.3593 6.8255 22 6 -1.3980 -9.4200 6.9000 23 6 -1.5121 -9.4488 8.4254 24 6 -1.6757 -10.8730 8.8900 25 8 -1.6992 -11.7726 8.0837 26 8 -1.7954 -11.1422 10.1996 27 6 -1.2411 -7.9208 4.8881 28 6 2.0697 -4.6145 0.9726 29 6 1.8178 -3.6536 -0.1936 30 1 -0.4849 0.8400 -0.0004 31 1 0.1002 -1.3341 1.6687 32 1 -0.6761 -2.6413 0.7383 33 1 -0.3888 -3.3797 3.0508 34 1 1.3409 -2.9605 3.0007 35 1 -0.0260 -5.0409 1.2337 36 1 1.5850 -6.4293 5.9037 37 1 -0.0038 -5.5980 5.9115 38 1 -2.3007 -9.8438 6.4599 39 1 -0.5329 -10.0056 6.5891 40 1 -0.6094 -9.0249 8.8653 41 1 -2.3773 -8.8632 8.7362 42 1 -1.8986 -12.0707 10.4493 43 1 -2.0626 -7.2986 4.5331 44 1 -1.3158 -8.9248 4.4702 45 1 2.3092 -5.6041 0.5835 46 1 2.9027 -4.2481 1.5726 47 1 1.0467 -4.0643 -0.8455 48 1 2.7386 -3.5138 -0.7600 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001605586344.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:57 Heat of formation + Delta-G solvation = -236.949582 kcal Electronic energy + Delta-G solvation = -29793.672096 eV Core-core repulsion = 25426.883176 eV Total energy + Delta-G solvation = -4366.788920 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.176 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.00049 -41.23705 -40.36050 -39.03767 -37.35108 -37.14722 -34.79591 -34.59094 -33.47784 -32.09283 -31.53702 -30.14628 -27.24919 -25.87799 -25.25997 -23.99054 -23.62247 -22.53339 -21.64037 -21.24542 -21.00130 -19.07422 -19.04758 -18.88185 -17.96620 -17.54270 -17.34378 -17.05486 -16.85890 -16.40807 -16.25784 -16.02996 -15.54023 -15.41798 -14.94834 -14.75785 -14.47806 -14.37648 -14.24097 -14.20620 -14.04737 -13.40380 -13.26746 -13.07853 -12.97019 -12.85463 -12.64408 -12.55054 -12.48333 -12.38222 -12.15396 -12.11105 -12.08581 -11.95484 -11.85168 -11.76192 -11.59052 -11.54859 -11.36632 -11.08143 -10.75457 -10.57119 -8.77142 -7.91056 -5.37379 1.07675 1.24616 1.47193 1.49053 1.54469 1.58481 2.18996 2.49991 2.78276 3.21360 3.25705 3.54501 3.62018 3.67619 3.78515 3.81378 3.86974 3.89823 4.09180 4.12085 4.16410 4.19674 4.37283 4.47618 4.55964 4.57612 4.67199 4.70508 4.73005 4.76925 4.86085 4.86995 4.93462 4.94868 4.95801 5.03925 5.05563 5.23434 5.24301 5.36217 5.50318 5.62244 5.65049 5.66321 5.79081 6.35238 6.65420 7.02116 7.09726 7.79198 8.31753 9.16693 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.030685 B = 0.001789 C = 0.001754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.278481 B =15651.244279 C =15956.062905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.051 4.051 3 Si 0.970 3.030 4 H -0.286 1.286 5 H -0.265 1.265 6 H -0.297 1.297 7 C -0.264 4.264 8 H 0.074 0.926 9 N -0.610 5.610 10 C 0.183 3.817 11 C -0.138 4.138 12 C 0.105 3.895 13 O -0.348 6.348 14 C 0.467 3.533 15 O -0.535 6.535 16 C -0.113 4.113 17 H 0.144 0.856 18 C 0.066 3.934 19 O -0.371 6.371 20 C 0.080 3.920 21 H 0.088 0.912 22 C -0.103 4.103 23 C -0.111 4.111 24 C 0.483 3.517 25 O -0.556 6.556 26 O -0.517 6.517 27 C -0.142 4.142 28 C -0.114 4.114 29 C 0.142 3.858 30 H 0.251 0.749 31 H 0.062 0.938 32 H -0.005 1.005 33 H 0.056 0.944 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.124 0.876 37 H 0.062 0.938 38 H 0.089 0.911 39 H 0.073 0.927 40 H 0.120 0.880 41 H 0.127 0.873 42 H 0.426 0.574 43 H 0.084 0.916 44 H 0.101 0.899 45 H 0.091 0.909 46 H 0.074 0.926 47 H 0.017 0.983 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.754 -21.223 18.723 28.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.247 4.247 3 Si 0.798 3.202 4 H -0.213 1.213 5 H -0.189 1.189 6 H -0.223 1.223 7 C -0.394 4.394 8 H 0.092 0.908 9 N -0.333 5.333 10 C 0.056 3.944 11 C -0.178 4.178 12 C 0.050 3.950 13 O -0.264 6.264 14 C 0.311 3.689 15 O -0.424 6.424 16 C -0.133 4.133 17 H 0.162 0.838 18 C -0.011 4.011 19 O -0.290 6.290 20 C 0.023 3.977 21 H 0.106 0.894 22 C -0.140 4.140 23 C -0.148 4.148 24 C 0.328 3.672 25 O -0.448 6.448 26 O -0.330 6.330 27 C -0.179 4.179 28 C -0.153 4.153 29 C 0.017 3.983 30 H 0.060 0.940 31 H 0.080 0.920 32 H 0.013 0.987 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.142 0.858 37 H 0.080 0.920 38 H 0.107 0.893 39 H 0.092 0.908 40 H 0.138 0.862 41 H 0.145 0.855 42 H 0.287 0.713 43 H 0.102 0.898 44 H 0.120 0.880 45 H 0.110 0.890 46 H 0.093 0.907 47 H 0.035 0.965 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.008 -20.895 18.405 27.863 hybrid contribution -0.394 0.595 -0.523 0.885 sum -1.402 -20.300 17.882 27.089 Atomic orbital electron populations 1.70193 1.06835 1.25989 1.55298 1.25863 0.96032 1.01743 1.01022 0.85213 0.78269 0.79314 0.77403 1.21261 1.18916 1.22349 1.19580 0.93113 0.85707 1.40994 0.90832 1.44353 1.35713 1.02680 1.50593 1.20392 0.88080 0.97406 0.88477 1.22329 1.01079 0.94979 0.99396 1.22648 0.99618 0.86734 0.85989 1.86540 1.38030 1.52014 1.49838 1.23900 0.82095 0.79610 0.83336 1.90663 1.28540 1.64540 1.58655 1.22722 1.02106 0.96446 0.91991 0.83783 1.23485 1.02429 0.92379 0.82792 1.88896 1.35957 1.61647 1.42523 1.22844 0.87191 0.95287 0.92408 0.89393 1.21598 1.04151 0.94558 0.93728 1.21409 1.07417 0.89127 0.96834 1.23896 0.70398 0.93119 0.79806 1.90729 1.48293 1.49765 1.55976 1.84519 1.84085 1.37926 1.26505 1.23050 0.95688 1.03255 0.95937 1.22038 0.95753 1.00804 0.96734 1.21064 0.98386 0.85349 0.93510 0.94040 0.91975 0.98699 0.92505 0.91393 0.91778 0.85840 0.91996 0.89288 0.90791 0.86196 0.85529 0.71271 0.89778 0.88036 0.89014 0.90713 0.96524 0.90794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.60 11.20 21.65 0.24 -55.35 16 2 C -0.05 -2.84 4.91 84.86 0.42 -2.42 16 3 Si 0.97 44.36 29.59 68.60 2.03 46.39 16 4 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 5 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 6 H -0.30 -13.74 7.11 99.48 0.71 -13.03 16 7 C -0.26 -14.29 9.58 84.03 0.81 -13.48 16 8 H 0.07 3.82 7.88 -2.91 -0.02 3.79 16 9 N -0.61 -30.42 3.00 -699.92 -2.10 -32.52 16 10 C 0.18 9.02 5.28 86.22 0.45 9.47 16 11 C -0.14 -5.47 5.70 30.53 0.17 -5.30 16 12 C 0.10 3.64 2.42 30.62 0.07 3.71 16 13 O -0.35 -10.17 9.88 -51.40 -0.51 -10.67 16 14 C 0.47 12.58 7.25 71.24 0.52 13.10 16 15 O -0.53 -18.06 14.67 21.96 0.32 -17.74 16 16 C -0.11 -2.02 3.63 -10.24 -0.04 -2.06 16 17 H 0.14 1.95 8.14 -2.39 -0.02 1.93 16 18 C 0.07 1.07 7.16 72.67 0.52 1.59 16 19 O -0.37 -5.87 10.84 -148.98 -1.61 -7.48 16 20 C 0.08 1.06 3.41 30.97 0.11 1.16 16 21 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 22 C -0.10 -1.20 3.99 30.60 0.12 -1.08 16 23 C -0.11 -1.05 5.73 29.85 0.17 -0.88 16 24 C 0.48 6.38 8.33 71.23 0.59 6.97 16 25 O -0.56 -11.33 16.74 21.95 0.37 -10.96 16 26 O -0.52 -4.66 13.42 -51.45 -0.69 -5.35 16 27 C -0.14 -2.27 6.06 31.58 0.19 -2.07 16 28 C -0.11 -3.72 5.74 30.67 0.18 -3.55 16 29 C 0.14 5.71 6.52 86.36 0.56 6.28 16 30 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 31 H 0.06 3.44 6.06 -2.39 -0.01 3.43 16 32 H -0.01 -0.27 8.14 -2.39 -0.02 -0.29 16 33 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 34 H 0.07 2.64 8.14 -2.39 -0.02 2.63 16 35 H 0.06 2.45 7.16 -2.39 -0.02 2.43 16 36 H 0.12 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.06 1.11 8.04 -2.39 -0.02 1.09 16 38 H 0.09 1.02 8.10 -2.39 -0.02 1.00 16 39 H 0.07 1.02 8.10 -2.39 -0.02 1.00 16 40 H 0.12 1.06 7.91 -2.38 -0.02 1.04 16 41 H 0.13 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.43 0.60 9.10 -74.06 -0.67 -0.07 16 43 H 0.08 1.67 6.86 -2.39 -0.02 1.65 16 44 H 0.10 1.37 7.70 -2.38 -0.02 1.35 16 45 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 46 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 47 H 0.02 0.69 8.14 -2.38 -0.02 0.67 16 48 H 0.07 2.79 7.93 -2.38 -0.02 2.77 16 Total: -1.00 -73.03 390.94 3.19 -69.83 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: 0.30 Total: 12.41 kcal Atomic # 6 Polarization: 6.60 SS G_CDS: 4.85 Total: 11.45 kcal Atomic # 7 Polarization: -86.02 SS G_CDS: -1.86 Total: -87.87 kcal Atomic # 8 Polarization: -50.09 SS G_CDS: -2.12 Total: -52.21 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -73.03 3.19 -69.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605586344.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -167.117 kcal (2) G-P(sol) polarization free energy of solvation -73.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -240.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -236.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds