Wall clock time and date at job start Sat Apr 11 2020 06:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99847 * 2 1 4 4 H 1.48500 * 109.46862 * 239.99885 * 3 2 1 5 5 H 1.48499 * 109.47102 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47104 * 120.00094 * 3 2 1 7 7 C 1.37875 * 119.99907 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99882 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99918 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.46922 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.47434 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47400 * 179.97438 * 11 10 9 13 13 C 1.50700 * 109.46889 * 179.97438 * 12 11 10 14 14 O 1.20826 * 120.00211 * 0.02562 * 13 12 11 15 15 O 1.34231 * 119.99606 * 180.02562 * 13 12 11 16 16 C 1.45205 * 116.99806 * 180.02562 * 15 13 12 17 17 C 1.50698 * 109.46924 * 179.97438 * 16 15 13 18 18 O 1.21274 * 120.00423 * 359.97438 * 17 16 15 19 19 N 1.34783 * 119.99922 * 180.02562 * 17 16 15 20 20 C 1.46919 * 120.63144 * 179.97438 * 19 17 16 21 21 C 1.53195 * 108.89273 * 233.55709 * 20 19 17 22 22 C 1.53070 * 109.29524 * 305.57804 * 21 20 19 23 23 C 1.50699 * 109.44585 * 181.23845 * 22 21 20 24 24 O 1.20827 * 119.99861 * 239.80288 * 23 22 21 25 25 O 1.34229 * 119.99955 * 59.78903 * 23 22 21 26 26 C 1.53039 * 109.65812 * 61.15209 * 22 21 20 27 27 C 1.46928 * 120.62874 * 0.02562 * 19 17 16 28 28 H 0.97003 * 120.00238 * 359.97438 * 1 2 3 29 29 H 1.08993 * 109.47420 * 60.00325 * 9 7 2 30 30 H 1.08998 * 109.47227 * 299.99894 * 9 7 2 31 31 H 1.09002 * 109.47141 * 60.00102 * 10 9 7 32 32 H 1.09004 * 109.46960 * 300.00255 * 10 9 7 33 33 H 1.08998 * 109.46662 * 59.99461 * 11 10 9 34 34 H 1.09003 * 109.46700 * 300.00629 * 11 10 9 35 35 H 1.09002 * 109.46875 * 60.00180 * 12 11 10 36 36 H 1.08992 * 109.47543 * 300.00105 * 12 11 10 37 37 H 1.09001 * 109.47251 * 59.99423 * 16 15 13 38 38 H 1.08997 * 109.47014 * 299.99926 * 16 15 13 39 39 H 1.09002 * 109.58751 * 353.41659 * 20 19 17 40 40 H 1.08996 * 109.58750 * 113.69843 * 20 19 17 41 41 H 1.08997 * 109.50046 * 65.38734 * 21 20 19 42 42 H 1.09003 * 109.49733 * 185.48713 * 21 20 19 43 43 H 1.09007 * 109.35101 * 301.12962 * 22 21 20 44 44 H 0.96700 * 116.99923 * 180.02562 * 25 23 22 45 45 H 1.09002 * 109.49876 * 178.74890 * 26 22 21 46 46 H 1.09005 * 109.52615 * 58.67140 * 26 22 21 47 47 H 1.08998 * 109.58787 * 246.16207 * 27 19 17 48 48 H 1.09007 * 109.58600 * 6.44520 * 27 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6620 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 6 2.4745 -6.1500 -0.0018 13 6 1.7210 -7.4551 -0.0018 14 8 0.5127 -7.4551 -0.0018 15 8 2.3922 -8.6175 -0.0018 16 6 1.6013 -9.8353 -0.0024 17 6 2.5194 -11.0304 -0.0029 18 8 3.7217 -10.8716 -0.0033 19 7 2.0042 -12.2759 -0.0041 20 6 2.8864 -13.4508 -0.0052 21 6 2.4956 -14.3634 -1.1720 22 6 1.0039 -14.6937 -1.0781 23 6 0.6223 -15.6160 -2.2072 24 8 -0.2186 -15.2773 -3.0060 25 8 1.2168 -16.8136 -2.3257 26 6 0.1842 -13.4049 -1.1733 27 6 0.5498 -12.4844 -0.0053 28 1 -0.4850 0.8400 0.0004 29 1 0.6240 -2.5567 -0.8902 30 1 0.6247 -2.5571 0.8897 31 1 2.8719 -3.6043 0.8895 32 1 2.8719 -3.6042 -0.8905 33 1 0.8539 -5.0445 -0.8914 34 1 0.8533 -5.0451 0.8886 35 1 3.1012 -6.0927 0.8882 36 1 3.1011 -6.0919 -0.8917 37 1 0.9728 -9.8600 -0.8926 38 1 0.9722 -9.8604 0.8873 39 1 3.9216 -13.1304 -0.1227 40 1 2.7757 -13.9917 0.9346 41 1 2.6948 -13.8540 -2.1148 42 1 3.0779 -15.2836 -1.1249 43 1 0.8016 -15.1832 -0.1254 44 1 0.9393 -17.3702 -3.0662 45 1 -0.8781 -13.6452 -1.1285 46 1 0.4040 -12.9020 -2.1151 47 1 0.2463 -12.9476 0.9335 48 1 0.0434 -11.5260 -0.1204 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001610621444.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:05 Heat of formation + Delta-G solvation = -236.353660 kcal Electronic energy + Delta-G solvation = -28604.170152 eV Core-core repulsion = 24237.407073 eV Total energy + Delta-G solvation = -4366.763079 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.176 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.36967 -40.76723 -40.04843 -37.89633 -36.73885 -36.56513 -34.98416 -33.89713 -32.69022 -32.04299 -30.23414 -29.10498 -26.96005 -25.72783 -24.08729 -23.25608 -22.63639 -21.23966 -20.62850 -20.03099 -19.71410 -18.67008 -18.08252 -17.45250 -17.17162 -17.08003 -16.67989 -16.18336 -16.14359 -15.82166 -15.61759 -14.90166 -14.68271 -14.50470 -14.43112 -14.20245 -13.84739 -13.75587 -13.11538 -13.06840 -12.85902 -12.62514 -12.57001 -12.25770 -12.15606 -11.99318 -11.73936 -11.66777 -11.56743 -11.46182 -11.04214 -11.00931 -10.97785 -10.62183 -10.57849 -10.47938 -10.45526 -10.20901 -9.63982 -9.32465 -9.28147 -9.02535 -8.30402 -5.95475 -3.98053 1.57046 1.91300 2.05369 2.20908 2.38334 2.83279 3.36241 3.40495 3.42995 3.78480 3.81657 4.04205 4.21427 4.27263 4.48019 4.49466 4.59407 4.64153 4.65977 4.68669 4.83474 4.89550 4.96116 5.09299 5.12206 5.24174 5.27692 5.28205 5.35542 5.40062 5.51179 5.70443 5.84813 5.89147 6.06017 6.17175 6.26572 6.46979 6.69143 6.77129 6.94909 7.16922 7.26565 7.59547 7.72126 7.73170 7.87710 8.05156 8.47070 9.09249 9.65758 11.15764 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.031366 B = 0.001403 C = 0.001369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.481919 B =19954.851922 C =20441.158369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.522 4.522 8 H 0.055 0.945 9 C 0.020 3.980 10 C -0.111 4.111 11 C -0.108 4.108 12 C -0.110 4.110 13 C 0.462 3.538 14 O -0.505 6.505 15 O -0.338 6.338 16 C 0.046 3.954 17 C 0.521 3.479 18 O -0.511 6.511 19 N -0.616 5.616 20 C 0.115 3.885 21 C -0.127 4.127 22 C -0.079 4.079 23 C 0.482 3.518 24 O -0.511 6.511 25 O -0.516 6.516 26 C -0.123 4.123 27 C 0.104 3.896 28 H 0.260 0.740 29 H 0.016 0.984 30 H 0.016 0.984 31 H 0.050 0.950 32 H 0.050 0.950 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.106 0.894 36 H 0.106 0.894 37 H 0.101 0.899 38 H 0.101 0.899 39 H 0.102 0.898 40 H 0.076 0.924 41 H 0.075 0.925 42 H 0.093 0.907 43 H 0.114 0.886 44 H 0.412 0.588 45 H 0.091 0.909 46 H 0.081 0.919 47 H 0.081 0.919 48 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.392 -38.131 -0.546 38.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.560 4.560 8 H 0.073 0.927 9 C -0.017 4.017 10 C -0.148 4.148 11 C -0.146 4.146 12 C -0.148 4.148 13 C 0.306 3.694 14 O -0.392 6.392 15 O -0.254 6.254 16 C -0.031 4.031 17 C 0.308 3.692 18 O -0.385 6.385 19 N -0.352 5.352 20 C -0.007 4.007 21 C -0.165 4.165 22 C -0.099 4.099 23 C 0.324 3.676 24 O -0.399 6.399 25 O -0.328 6.328 26 C -0.161 4.161 27 C -0.019 4.019 28 H 0.070 0.930 29 H 0.035 0.965 30 H 0.035 0.965 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.124 0.876 36 H 0.124 0.876 37 H 0.119 0.881 38 H 0.119 0.881 39 H 0.121 0.879 40 H 0.094 0.906 41 H 0.094 0.906 42 H 0.112 0.888 43 H 0.132 0.868 44 H 0.271 0.729 45 H 0.110 0.890 46 H 0.100 0.900 47 H 0.099 0.901 48 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 2.422 -37.582 -0.436 37.663 hybrid contribution -0.133 0.314 -0.571 0.665 sum 2.289 -37.268 -1.007 37.352 Atomic orbital electron populations 1.69963 1.06051 1.26638 1.50831 1.25031 0.94840 0.99226 0.95388 0.86663 0.79571 0.83194 0.78585 1.20271 1.21326 1.20264 1.21244 0.93011 0.91164 1.50604 0.92723 1.19092 0.94022 0.91215 0.97353 1.21659 0.99173 0.93487 1.00508 1.21590 0.97061 0.92662 1.03251 1.21633 0.99972 0.87292 1.05856 1.24386 0.87647 0.85629 0.71751 1.90676 1.15569 1.87694 1.45215 1.86619 1.40540 1.13764 1.84479 1.22651 0.93080 0.82412 1.04962 1.20127 0.89025 0.83605 0.76424 1.90760 1.15061 1.85129 1.47558 1.48043 1.07258 1.05307 1.74632 1.21606 0.96112 0.85087 0.97891 1.21965 0.93051 1.01134 1.00347 1.21069 0.98029 0.94246 0.96513 1.23448 0.77991 0.80465 0.85676 1.90758 1.31524 1.74880 1.42706 1.84520 1.64889 1.29399 1.53982 1.21871 1.00657 0.93664 0.99929 1.21867 0.79834 1.01263 0.98941 0.92994 0.96535 0.96547 0.93133 0.93143 0.91502 0.91494 0.87609 0.87612 0.88102 0.88076 0.87944 0.90585 0.90590 0.88816 0.86798 0.72916 0.89048 0.90030 0.90114 0.88684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.32 13.29 55.43 0.74 -26.59 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.52 -14.96 9.11 -34.44 -0.31 -15.27 16 8 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 10 C -0.11 -2.23 5.15 -26.73 -0.14 -2.37 16 11 C -0.11 -1.85 4.50 -26.73 -0.12 -1.97 16 12 C -0.11 -1.48 5.81 -27.89 -0.16 -1.64 16 13 C 0.46 6.50 7.96 36.01 0.29 6.79 16 14 O -0.50 -8.18 15.73 -18.75 -0.29 -8.48 16 15 O -0.34 -4.42 9.76 -45.91 -0.45 -4.87 16 16 C 0.05 0.45 4.29 36.00 0.15 0.60 16 17 C 0.52 5.15 7.78 -10.98 -0.09 5.07 16 18 O -0.51 -7.12 15.91 -14.10 -0.22 -7.34 16 19 N -0.62 -3.88 2.98 -172.80 -0.51 -4.39 16 20 C 0.11 0.56 6.43 -3.71 -0.02 0.54 16 21 C -0.13 -0.47 5.31 -26.59 -0.14 -0.61 16 22 C -0.08 -0.29 2.58 -91.72 -0.24 -0.52 16 23 C 0.48 2.65 7.63 36.01 0.27 2.93 16 24 O -0.51 -4.63 16.74 -18.75 -0.31 -4.94 16 25 O -0.52 -1.80 13.30 -39.25 -0.52 -2.32 16 26 C -0.12 -0.51 4.65 -26.64 -0.12 -0.63 16 27 C 0.10 0.38 6.34 -3.74 -0.02 0.36 16 28 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 29 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.07 1.19 8.10 -51.93 -0.42 0.77 16 34 H 0.07 1.19 8.10 -51.93 -0.42 0.77 16 35 H 0.11 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.11 1.27 8.14 -51.93 -0.42 0.84 16 37 H 0.10 0.83 7.69 -51.93 -0.40 0.43 16 38 H 0.10 0.80 7.93 -51.93 -0.41 0.39 16 39 H 0.10 0.68 7.00 -51.93 -0.36 0.31 16 40 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 41 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.09 0.24 8.09 -51.93 -0.42 -0.18 16 43 H 0.11 0.20 8.14 -51.93 -0.42 -0.22 16 44 H 0.41 -0.01 9.10 45.56 0.41 0.40 16 45 H 0.09 0.35 8.07 -51.93 -0.42 -0.07 16 46 H 0.08 0.47 8.13 -51.93 -0.42 0.05 16 47 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 48 H 0.09 0.32 5.93 -51.92 -0.31 0.01 16 LS Contribution 402.14 15.07 6.06 6.06 Total: -1.00 -38.24 402.14 -8.37 -46.61 By element: Atomic # 1 Polarization: 1.17 SS G_CDS: -6.94 Total: -5.77 kcal Atomic # 6 Polarization: -3.92 SS G_CDS: -0.89 Total: -4.81 kcal Atomic # 7 Polarization: -31.20 SS G_CDS: 0.22 Total: -30.98 kcal Atomic # 8 Polarization: -26.15 SS G_CDS: -1.80 Total: -27.95 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -38.24 -8.37 -46.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610621444.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -189.743 kcal (2) G-P(sol) polarization free energy of solvation -38.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -227.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -236.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds