Wall clock time and date at job start Sat Apr 11 2020 06:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99847 * 2 1 4 4 H 1.48500 * 109.46862 * 239.99885 * 3 2 1 5 5 H 1.48499 * 109.47102 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47104 * 120.00094 * 3 2 1 7 7 C 1.37875 * 119.99907 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99882 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99918 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.46922 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.47434 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47400 * 179.97438 * 11 10 9 13 13 C 1.50700 * 109.46889 * 179.97438 * 12 11 10 14 14 O 1.20826 * 120.00211 * 0.02562 * 13 12 11 15 15 O 1.34231 * 119.99606 * 180.02562 * 13 12 11 16 16 C 1.45205 * 116.99806 * 180.02562 * 15 13 12 17 17 C 1.50698 * 109.46924 * 179.97438 * 16 15 13 18 18 O 1.21274 * 120.00423 * 359.97438 * 17 16 15 19 19 N 1.34783 * 119.99922 * 180.02562 * 17 16 15 20 20 C 1.46919 * 120.63144 * 179.97438 * 19 17 16 21 21 C 1.53195 * 108.89273 * 233.55709 * 20 19 17 22 22 C 1.53070 * 109.29524 * 305.57804 * 21 20 19 23 23 C 1.50699 * 109.44585 * 181.23845 * 22 21 20 24 24 O 1.20827 * 119.99861 * 239.80288 * 23 22 21 25 25 O 1.34229 * 119.99955 * 59.78903 * 23 22 21 26 26 C 1.53039 * 109.65812 * 61.15209 * 22 21 20 27 27 C 1.46928 * 120.62874 * 0.02562 * 19 17 16 28 28 H 0.97003 * 120.00238 * 359.97438 * 1 2 3 29 29 H 1.08993 * 109.47420 * 60.00325 * 9 7 2 30 30 H 1.08998 * 109.47227 * 299.99894 * 9 7 2 31 31 H 1.09002 * 109.47141 * 60.00102 * 10 9 7 32 32 H 1.09004 * 109.46960 * 300.00255 * 10 9 7 33 33 H 1.08998 * 109.46662 * 59.99461 * 11 10 9 34 34 H 1.09003 * 109.46700 * 300.00629 * 11 10 9 35 35 H 1.09002 * 109.46875 * 60.00180 * 12 11 10 36 36 H 1.08992 * 109.47543 * 300.00105 * 12 11 10 37 37 H 1.09001 * 109.47251 * 59.99423 * 16 15 13 38 38 H 1.08997 * 109.47014 * 299.99926 * 16 15 13 39 39 H 1.09002 * 109.58751 * 353.41659 * 20 19 17 40 40 H 1.08996 * 109.58750 * 113.69843 * 20 19 17 41 41 H 1.08997 * 109.50046 * 65.38734 * 21 20 19 42 42 H 1.09003 * 109.49733 * 185.48713 * 21 20 19 43 43 H 1.09007 * 109.35101 * 301.12962 * 22 21 20 44 44 H 0.96700 * 116.99923 * 180.02562 * 25 23 22 45 45 H 1.09002 * 109.49876 * 178.74890 * 26 22 21 46 46 H 1.09005 * 109.52615 * 58.67140 * 26 22 21 47 47 H 1.08998 * 109.58787 * 246.16207 * 27 19 17 48 48 H 1.09007 * 109.58600 * 6.44520 * 27 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6620 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 6 2.4745 -6.1500 -0.0018 13 6 1.7210 -7.4551 -0.0018 14 8 0.5127 -7.4551 -0.0018 15 8 2.3922 -8.6175 -0.0018 16 6 1.6013 -9.8353 -0.0024 17 6 2.5194 -11.0304 -0.0029 18 8 3.7217 -10.8716 -0.0033 19 7 2.0042 -12.2759 -0.0041 20 6 2.8864 -13.4508 -0.0052 21 6 2.4956 -14.3634 -1.1720 22 6 1.0039 -14.6937 -1.0781 23 6 0.6223 -15.6160 -2.2072 24 8 -0.2186 -15.2773 -3.0060 25 8 1.2168 -16.8136 -2.3257 26 6 0.1842 -13.4049 -1.1733 27 6 0.5498 -12.4844 -0.0053 28 1 -0.4850 0.8400 0.0004 29 1 0.6240 -2.5567 -0.8902 30 1 0.6247 -2.5571 0.8897 31 1 2.8719 -3.6043 0.8895 32 1 2.8719 -3.6042 -0.8905 33 1 0.8539 -5.0445 -0.8914 34 1 0.8533 -5.0451 0.8886 35 1 3.1012 -6.0927 0.8882 36 1 3.1011 -6.0919 -0.8917 37 1 0.9728 -9.8600 -0.8926 38 1 0.9722 -9.8604 0.8873 39 1 3.9216 -13.1304 -0.1227 40 1 2.7757 -13.9917 0.9346 41 1 2.6948 -13.8540 -2.1148 42 1 3.0779 -15.2836 -1.1249 43 1 0.8016 -15.1832 -0.1254 44 1 0.9393 -17.3702 -3.0662 45 1 -0.8781 -13.6452 -1.1285 46 1 0.4040 -12.9020 -2.1151 47 1 0.2463 -12.9476 0.9335 48 1 0.0434 -11.5260 -0.1204 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001610621444.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:04 Heat of formation + Delta-G solvation = -260.805117 kcal Electronic energy + Delta-G solvation = -28605.230447 eV Core-core repulsion = 24237.407073 eV Total energy + Delta-G solvation = -4367.823374 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.176 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.96881 -41.55767 -40.78157 -38.50397 -37.65411 -37.12127 -36.60869 -34.65722 -34.40848 -32.45945 -31.75988 -30.04083 -27.79547 -27.13507 -24.66701 -24.35443 -23.49503 -22.10284 -21.64171 -21.46489 -20.22833 -19.09159 -18.92555 -18.43197 -18.15675 -18.01586 -17.75494 -17.34571 -16.76707 -16.64233 -16.50549 -16.30404 -15.94886 -15.14793 -15.09006 -14.75533 -14.57491 -14.55393 -14.39220 -13.98828 -13.85834 -13.58848 -13.55247 -13.39515 -13.28967 -13.02253 -12.79900 -12.57459 -12.38564 -12.33323 -12.18201 -12.17699 -11.94034 -11.90371 -11.82452 -11.69462 -11.50258 -11.36693 -11.29535 -11.09162 -10.95150 -10.52190 -9.85316 -8.17116 -6.28687 1.11370 1.14354 1.17298 1.34391 1.41974 1.45385 1.53203 2.05638 2.13727 2.43567 3.15861 3.21561 3.47311 3.65971 3.70880 3.88773 3.92340 3.95426 3.98111 4.01298 4.10612 4.23063 4.28710 4.34890 4.52887 4.63683 4.64480 4.66016 4.74776 4.79455 4.80164 4.87536 4.91309 5.02764 5.16016 5.16444 5.18851 5.33477 5.37562 5.43182 5.58102 5.60857 5.80024 5.90064 6.10295 6.27585 6.64600 6.89378 6.92831 6.96095 7.40758 8.94618 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.031366 B = 0.001403 C = 0.001369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.481919 B =19954.851922 C =20441.158369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.004 4.004 3 Si 0.967 3.033 4 H -0.266 1.266 5 H -0.285 1.285 6 H -0.265 1.265 7 C -0.545 4.545 8 H 0.064 0.936 9 C 0.019 3.981 10 C -0.098 4.098 11 C -0.098 4.098 12 C -0.104 4.104 13 C 0.470 3.530 14 O -0.532 6.532 15 O -0.347 6.347 16 C 0.040 3.960 17 C 0.520 3.480 18 O -0.561 6.561 19 N -0.606 5.606 20 C 0.112 3.888 21 C -0.117 4.117 22 C -0.077 4.077 23 C 0.486 3.514 24 O -0.554 6.554 25 O -0.511 6.511 26 C -0.120 4.120 27 C 0.101 3.899 28 H 0.263 0.737 29 H -0.012 1.012 30 H -0.011 1.011 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.053 0.947 34 H 0.054 0.946 35 H 0.128 0.872 36 H 0.126 0.874 37 H 0.114 0.886 38 H 0.121 0.879 39 H 0.082 0.918 40 H 0.104 0.896 41 H 0.056 0.944 42 H 0.110 0.890 43 H 0.144 0.856 44 H 0.427 0.573 45 H 0.097 0.903 46 H 0.058 0.942 47 H 0.110 0.890 48 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.541 -39.521 0.282 39.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.201 4.201 3 Si 0.791 3.209 4 H -0.191 1.191 5 H -0.210 1.210 6 H -0.190 1.190 7 C -0.582 4.582 8 H 0.083 0.917 9 C -0.018 4.018 10 C -0.136 4.136 11 C -0.136 4.136 12 C -0.141 4.141 13 C 0.315 3.685 14 O -0.421 6.421 15 O -0.263 6.263 16 C -0.037 4.037 17 C 0.308 3.692 18 O -0.439 6.439 19 N -0.341 5.341 20 C -0.009 4.009 21 C -0.156 4.156 22 C -0.095 4.095 23 C 0.330 3.670 24 O -0.445 6.445 25 O -0.324 6.324 26 C -0.159 4.159 27 C -0.020 4.020 28 H 0.071 0.929 29 H 0.006 0.994 30 H 0.007 0.993 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.146 0.854 36 H 0.144 0.856 37 H 0.132 0.868 38 H 0.139 0.861 39 H 0.101 0.899 40 H 0.122 0.878 41 H 0.075 0.925 42 H 0.128 0.872 43 H 0.161 0.839 44 H 0.288 0.712 45 H 0.115 0.885 46 H 0.077 0.923 47 H 0.129 0.871 48 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 3.573 -39.047 0.390 39.212 hybrid contribution -0.544 0.593 -0.851 1.171 sum 3.029 -38.454 -0.461 38.576 Atomic orbital electron populations 1.70113 1.07930 1.27753 1.51802 1.26031 0.95757 1.03520 0.94783 0.85480 0.78217 0.77961 0.79255 1.19101 1.21028 1.19021 1.21740 0.93750 0.92363 1.50389 0.91736 1.19047 0.94650 0.93468 0.94637 1.21456 0.97969 0.92570 1.01570 1.21352 0.97315 0.92854 1.02094 1.21507 0.99026 0.85602 1.07963 1.24314 0.87105 0.86122 0.71005 1.90669 1.16664 1.88112 1.46687 1.86580 1.41152 1.14441 1.84080 1.22954 0.93094 0.81047 1.06571 1.20196 0.88311 0.84625 0.76102 1.90738 1.16852 1.85918 1.50404 1.48140 1.08685 1.04570 1.72676 1.21756 0.94870 0.84667 0.99610 1.21878 0.93488 1.01302 0.98883 1.21137 0.97446 0.93810 0.97147 1.23774 0.77086 0.80808 0.85319 1.90749 1.33566 1.75808 1.44328 1.84491 1.64339 1.28891 1.54711 1.21820 1.01151 0.93886 0.98995 1.22103 0.78005 1.01789 1.00121 0.92879 0.99367 0.99300 0.91926 0.92037 0.92823 0.92673 0.85409 0.85569 0.86809 0.86124 0.89945 0.87838 0.92546 0.87159 0.83872 0.71184 0.88480 0.92265 0.87147 0.88287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.23 13.29 21.45 0.28 -57.94 16 2 C 0.00 -0.20 5.46 84.65 0.46 0.26 16 3 Si 0.97 44.69 29.54 68.60 2.03 46.72 16 4 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 5 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 6 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 7 C -0.54 -31.37 9.11 25.60 0.23 -31.14 16 8 H 0.06 3.50 7.74 -2.91 -0.02 3.48 16 9 C 0.02 1.03 4.97 29.85 0.15 1.17 16 10 C -0.10 -3.91 5.15 30.60 0.16 -3.76 16 11 C -0.10 -3.34 4.50 30.59 0.14 -3.21 16 12 C -0.10 -2.63 5.81 29.85 0.17 -2.45 16 13 C 0.47 12.75 7.96 71.24 0.57 13.32 16 14 O -0.53 -17.03 15.73 21.96 0.35 -16.68 16 15 O -0.35 -8.75 9.76 -45.08 -0.44 -9.19 16 16 C 0.04 0.73 4.29 71.24 0.31 1.04 16 17 C 0.52 9.96 7.78 87.66 0.68 10.65 16 18 O -0.56 -15.76 15.91 15.79 0.25 -15.51 16 19 N -0.61 -6.74 2.98 -819.01 -2.44 -9.18 16 20 C 0.11 0.91 6.43 86.36 0.56 1.47 16 21 C -0.12 -0.69 5.31 30.68 0.16 -0.53 16 22 C -0.08 -0.39 2.58 -11.50 -0.03 -0.42 16 23 C 0.49 4.72 7.63 71.24 0.54 5.27 16 24 O -0.55 -9.88 16.74 21.96 0.37 -9.52 16 25 O -0.51 -2.62 13.30 -51.40 -0.68 -3.31 16 26 C -0.12 -0.82 4.65 30.65 0.14 -0.68 16 27 C 0.10 0.52 6.34 86.34 0.55 1.07 16 28 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 29 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 30 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 31 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 32 H 0.06 2.31 8.14 -2.38 -0.02 2.29 16 33 H 0.05 1.94 8.10 -2.39 -0.02 1.93 16 34 H 0.05 1.98 8.10 -2.39 -0.02 1.97 16 35 H 0.13 2.72 8.14 -2.39 -0.02 2.70 16 36 H 0.13 2.73 8.14 -2.39 -0.02 2.71 16 37 H 0.11 1.77 7.69 -2.39 -0.02 1.75 16 38 H 0.12 1.72 7.93 -2.39 -0.02 1.70 16 39 H 0.08 1.07 7.00 -2.39 -0.02 1.05 16 40 H 0.10 0.32 8.14 -2.39 -0.02 0.30 16 41 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 42 H 0.11 0.32 8.09 -2.39 -0.02 0.30 16 43 H 0.14 -0.05 8.14 -2.38 -0.02 -0.07 16 44 H 0.43 -0.67 9.10 -74.06 -0.67 -1.34 16 45 H 0.10 0.59 8.07 -2.39 -0.02 0.57 16 46 H 0.06 0.68 8.13 -2.38 -0.02 0.66 16 47 H 0.11 0.02 8.14 -2.39 -0.02 0.00 16 48 H 0.10 0.46 5.93 -2.38 -0.01 0.45 16 Total: -1.00 -85.14 402.14 4.80 -80.34 By element: Atomic # 1 Polarization: 1.93 SS G_CDS: 0.29 Total: 2.22 kcal Atomic # 6 Polarization: -12.73 SS G_CDS: 4.79 Total: -7.95 kcal Atomic # 7 Polarization: -64.97 SS G_CDS: -2.15 Total: -67.12 kcal Atomic # 8 Polarization: -54.05 SS G_CDS: -0.16 Total: -54.21 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -85.14 4.80 -80.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610621444.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -180.464 kcal (2) G-P(sol) polarization free energy of solvation -85.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -265.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -260.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds