Wall clock time and date at job start Sat Apr 11 2020 06:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13593 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46890 * 109.47450 * 307.86784 * 3 2 1 5 5 C 1.46854 * 110.99994 * 170.00060 * 4 3 2 6 6 C 1.53034 * 109.52130 * 185.83973 * 5 4 3 7 7 C 1.53126 * 109.28130 * 300.81899 * 6 5 4 8 8 C 1.52993 * 109.52465 * 177.56118 * 7 6 5 9 9 N 1.46498 * 109.47472 * 175.00176 * 8 7 6 10 10 S 1.65601 * 120.00315 * 165.27589 * 9 8 7 11 11 O 1.42102 * 104.27710 * 180.79984 * 10 9 8 12 12 O 1.42101 * 104.27317 * 308.65327 * 10 9 8 13 13 C 1.81389 * 104.44936 * 64.72563 * 10 9 8 14 14 C 1.53007 * 109.47309 * 173.81201 * 13 10 9 15 15 C 1.50700 * 115.54854 * 65.19124 * 14 13 10 16 16 H 1.07999 * 120.00034 * 264.78379 * 15 14 13 17 17 C 1.37876 * 119.99863 * 84.78912 * 15 14 13 18 18 N 1.31516 * 120.00071 * 352.22587 * 17 15 14 19 19 Si 1.86803 * 119.99795 * 172.22501 * 17 15 14 20 20 H 1.48495 * 109.47397 * 60.00211 * 19 17 15 21 21 H 1.48501 * 109.46768 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47267 * 299.99664 * 19 17 15 23 23 C 1.53002 * 117.49610 * 279.52810 * 14 13 10 24 24 C 1.52995 * 117.49864 * 210.86683 * 14 13 10 25 25 C 1.53121 * 109.15642 * 57.65549 * 7 6 5 26 26 C 1.46849 * 110.99945 * 294.21019 * 4 3 2 27 27 H 1.09007 * 109.46722 * 187.86878 * 3 2 1 28 28 H 1.09001 * 109.47126 * 67.87089 * 3 2 1 29 29 H 1.08998 * 109.45991 * 65.82629 * 5 4 3 30 30 H 1.08993 * 109.45510 * 305.85133 * 5 4 3 31 31 H 1.09005 * 109.50506 * 180.88389 * 6 5 4 32 32 H 1.09000 * 109.50878 * 60.76290 * 6 5 4 33 33 H 1.09002 * 109.52173 * 297.69315 * 7 6 5 34 34 H 1.08997 * 109.47469 * 54.99992 * 8 7 6 35 35 H 1.08999 * 109.47488 * 295.00142 * 8 7 6 36 36 H 0.97001 * 119.99696 * 345.00454 * 9 8 7 37 37 H 1.09006 * 109.47337 * 293.80721 * 13 10 9 38 38 H 1.09002 * 109.47632 * 53.81361 * 13 10 9 39 39 H 0.97003 * 120.00122 * 185.02862 * 18 17 15 40 40 H 1.08996 * 117.49740 * 359.97438 * 23 14 13 41 41 H 1.09000 * 117.49983 * 145.01990 * 23 14 13 42 42 H 1.09000 * 117.49768 * 214.97541 * 24 14 13 43 43 H 1.09001 * 117.49907 * 359.97251 * 24 14 13 44 44 H 1.09003 * 109.50328 * 62.28838 * 25 7 6 45 45 H 1.09004 * 109.50420 * 182.40243 * 25 7 6 46 46 H 1.08998 * 109.46498 * 294.17725 * 26 4 3 47 47 H 1.08997 * 109.46228 * 54.15651 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0981 -0.8492 1.0933 5 6 4.5465 -1.0648 0.9835 6 6 4.9965 -2.0675 2.0483 7 6 4.6464 -1.5228 3.4359 8 6 5.0388 -2.5479 4.5016 9 7 4.8144 -1.9789 5.8328 10 16 4.7999 -2.9649 7.1632 11 8 4.5413 -2.0851 8.2487 12 8 3.8853 -3.9981 6.8236 13 6 6.4896 -3.6174 7.2613 14 6 6.6488 -4.4295 8.5483 15 6 5.8153 -5.6821 8.6337 16 1 4.8582 -5.6608 9.1336 17 6 6.2747 -6.8553 8.0736 18 7 7.3629 -6.8495 7.3351 19 14 5.3514 -8.4530 8.3640 20 1 3.9662 -8.3257 7.8442 21 1 6.0452 -9.5607 7.6591 22 1 5.3092 -8.7429 9.8198 23 6 6.8974 -3.6566 9.8451 24 6 8.0326 -4.4558 9.2003 25 6 3.1394 -1.2614 3.5076 26 6 2.7432 -0.2819 2.4004 27 1 2.9708 1.0189 0.1407 28 1 2.9715 -0.3863 -0.9520 29 1 5.0668 -0.1186 1.1327 30 1 4.7813 -1.4562 -0.0063 31 1 6.0741 -2.2154 1.9768 32 1 4.4869 -3.0182 1.8915 33 1 5.1871 -0.5922 3.6089 34 1 6.0922 -2.8042 4.3890 35 1 4.4319 -3.4456 4.3833 36 1 4.6781 -1.0240 5.9354 37 1 6.6821 -4.2585 6.4010 38 1 7.1991 -2.7899 7.2638 39 1 7.6456 -7.6590 6.8816 40 1 6.9479 -2.5696 9.7813 41 1 6.4585 -4.0543 10.7601 42 1 8.3400 -5.3790 9.6914 43 1 8.8297 -3.8949 8.7123 44 1 2.6006 -2.1994 3.3736 45 1 2.8900 -0.8333 4.4785 46 1 3.2719 0.6606 2.5430 47 1 1.6684 -0.1049 2.4398 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001621918669.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:07 Heat of formation + Delta-G solvation = -24.404987 kcal Electronic energy + Delta-G solvation = -27984.249561 eV Core-core repulsion = 24101.722888 eV Total energy + Delta-G solvation = -3882.526673 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.76414 -37.11219 -36.75517 -36.24462 -35.74533 -35.03823 -32.89021 -32.04377 -31.16975 -28.65497 -28.16118 -25.47381 -25.36666 -23.54659 -22.07590 -21.22031 -20.15859 -19.63292 -18.59258 -18.03863 -17.04243 -16.49955 -16.37979 -15.86229 -15.78319 -15.18059 -14.75237 -14.72282 -14.61690 -14.31018 -14.15091 -13.82818 -13.62298 -13.39986 -13.12980 -12.89671 -12.68964 -12.62666 -12.33109 -11.95671 -11.91347 -11.81116 -11.52220 -11.44998 -11.27190 -11.13686 -11.02456 -10.90426 -10.84140 -10.64523 -10.59567 -10.52240 -10.45513 -10.11681 -9.72333 -9.18026 -8.96610 -8.89713 -8.56283 -8.09218 -6.14232 -4.24660 1.09405 2.25328 2.44819 3.33091 3.34835 3.41973 3.44357 3.48237 3.70812 4.37504 4.37799 4.48996 4.51803 4.62870 4.74020 4.77013 4.93105 5.01870 5.04365 5.08790 5.14841 5.20907 5.22228 5.30968 5.46787 5.48679 5.53745 5.67603 5.71666 5.80293 5.91361 5.96452 6.00325 6.15727 6.24092 6.28344 6.36705 6.47759 6.55446 6.60621 6.71551 6.97731 7.21935 7.22040 7.29612 7.38514 7.80316 8.20256 8.80608 9.46528 10.93392 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016408 B = 0.002671 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.046804 B =10480.115372 C =10964.725722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C 0.212 3.788 3 C 0.148 3.852 4 N -0.536 5.536 5 C 0.061 3.939 6 C -0.114 4.114 7 C -0.093 4.093 8 C 0.120 3.880 9 N -1.133 6.133 10 S 2.607 3.393 11 O -0.976 6.976 12 O -0.949 6.949 13 C -0.554 4.554 14 C 0.044 3.956 15 C -0.517 4.517 16 H 0.068 0.932 17 C 0.083 3.917 18 N -0.875 5.875 19 Si 0.890 3.110 20 H -0.269 1.269 21 H -0.286 1.286 22 H -0.274 1.274 23 C -0.209 4.209 24 C -0.142 4.142 25 C -0.114 4.114 26 C 0.052 3.948 27 H 0.080 0.920 28 H 0.120 0.880 29 H 0.041 0.959 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.065 0.935 35 H 0.082 0.918 36 H 0.407 0.593 37 H 0.133 0.867 38 H 0.098 0.902 39 H 0.263 0.737 40 H 0.075 0.925 41 H 0.086 0.914 42 H 0.085 0.915 43 H 0.066 0.934 44 H 0.078 0.922 45 H 0.074 0.926 46 H 0.041 0.959 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.238 14.392 -14.839 20.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.104 5.104 2 C -0.107 4.107 3 C 0.018 3.982 4 N -0.262 5.262 5 C -0.067 4.067 6 C -0.153 4.153 7 C -0.113 4.113 8 C -0.006 4.006 9 N -0.890 5.890 10 S 2.704 3.296 11 O -0.967 6.967 12 O -0.939 6.939 13 C -0.687 4.687 14 C 0.042 3.958 15 C -0.554 4.554 16 H 0.086 0.914 17 C -0.122 4.122 18 N -0.511 5.511 19 Si 0.717 3.283 20 H -0.194 1.194 21 H -0.211 1.211 22 H -0.199 1.199 23 C -0.246 4.246 24 C -0.181 4.181 25 C -0.152 4.152 26 C -0.076 4.076 27 H 0.098 0.902 28 H 0.138 0.862 29 H 0.059 0.941 30 H 0.101 0.899 31 H 0.095 0.905 32 H 0.099 0.901 33 H 0.093 0.907 34 H 0.083 0.917 35 H 0.101 0.899 36 H 0.240 0.760 37 H 0.151 0.849 38 H 0.117 0.883 39 H 0.073 0.927 40 H 0.093 0.907 41 H 0.105 0.895 42 H 0.104 0.896 43 H 0.084 0.916 44 H 0.097 0.903 45 H 0.092 0.908 46 H 0.059 0.941 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.278 13.443 -14.439 19.860 hybrid contribution 1.126 0.268 -0.143 1.166 sum -1.152 13.712 -14.582 20.049 Atomic orbital electron populations 1.81242 1.13001 1.08407 1.07744 1.28971 0.95033 0.93145 0.93544 1.19517 0.82277 0.98452 0.97983 1.61865 1.15351 1.47177 1.01851 1.22111 0.85315 0.98821 1.00405 1.21638 1.01456 0.99486 0.92701 1.21405 0.96522 0.98892 0.94511 1.21297 1.00959 0.96945 0.81417 1.55973 1.90753 1.21312 1.20945 1.05113 0.78612 0.73595 0.72243 1.93502 1.85341 1.65227 1.52596 1.93539 1.59969 1.58018 1.82371 1.29979 1.20288 1.08743 1.09730 1.18269 0.98178 0.94478 0.84908 1.20490 1.04368 0.91861 1.38648 0.91412 1.24942 0.94290 0.98974 0.94025 1.69966 1.22975 1.28864 1.29249 0.86659 0.80540 0.82345 0.78752 1.19413 1.21121 1.19919 1.23198 1.05881 0.96685 0.98826 1.22554 0.91383 1.00230 1.03939 1.21670 0.95600 1.00465 0.97478 1.22233 1.00806 0.96303 0.88244 0.90189 0.86215 0.94071 0.89882 0.90468 0.90135 0.90666 0.91723 0.89926 0.76013 0.84883 0.88334 0.92685 0.90700 0.89546 0.89600 0.91552 0.90281 0.90771 0.94051 0.90879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -5.04 18.54 42.15 0.78 -4.26 16 2 C 0.21 1.78 14.43 -20.76 -0.30 1.48 16 3 C 0.15 0.66 5.46 -6.61 -0.04 0.62 16 4 N -0.54 -3.53 4.63 -238.18 -1.10 -4.63 16 5 C 0.06 0.31 5.46 -3.83 -0.02 0.29 16 6 C -0.11 -0.80 5.38 -26.65 -0.14 -0.94 16 7 C -0.09 -0.80 2.28 -90.50 -0.21 -1.00 16 8 C 0.12 1.42 5.52 -4.05 -0.02 1.39 16 9 N -1.13 -15.45 5.46 -10.62 -0.06 -15.51 16 10 S 2.61 50.88 5.19 -107.50 -0.56 50.32 16 11 O -0.98 -20.99 18.08 -57.54 -1.04 -22.03 16 12 O -0.95 -22.19 17.18 -57.54 -0.99 -23.18 16 13 C -0.55 -11.25 5.92 37.16 0.22 -11.03 16 14 C 0.04 1.06 1.32 -155.66 -0.21 0.85 16 15 C -0.52 -14.01 8.18 -34.44 -0.28 -14.29 16 16 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 17 C 0.08 2.23 5.38 -17.82 -0.10 2.14 16 18 N -0.88 -23.68 12.98 55.43 0.72 -22.96 16 19 Si 0.89 21.22 29.55 -169.99 -5.02 16.20 16 20 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 21 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 23 C -0.21 -4.54 9.96 -26.69 -0.27 -4.81 16 24 C -0.14 -3.19 9.49 -26.69 -0.25 -3.44 16 25 C -0.11 -1.07 5.24 -26.65 -0.14 -1.21 16 26 C 0.05 0.39 5.30 -3.83 -0.02 0.37 16 27 H 0.08 0.19 8.12 -51.92 -0.42 -0.23 16 28 H 0.12 0.24 7.99 -51.93 -0.41 -0.17 16 29 H 0.04 0.17 8.14 -51.93 -0.42 -0.25 16 30 H 0.08 0.31 8.01 -51.93 -0.42 -0.11 16 31 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.08 1.11 7.71 -51.93 -0.40 0.71 16 36 H 0.41 4.57 8.37 -34.47 -0.29 4.29 16 37 H 0.13 2.78 8.14 -51.92 -0.42 2.36 16 38 H 0.10 1.67 8.09 -51.92 -0.42 1.25 16 39 H 0.26 6.81 8.32 -40.82 -0.34 6.47 16 40 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 41 H 0.09 1.87 8.14 -51.93 -0.42 1.44 16 42 H 0.09 2.04 8.14 -51.93 -0.42 1.62 16 43 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 44 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 45 H 0.07 0.72 7.64 -51.93 -0.40 0.32 16 46 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 47 H 0.07 0.63 7.11 -51.93 -0.37 0.26 16 LS Contribution 399.13 15.07 6.01 6.01 Total: -1.00 -34.83 399.13 -10.77 -45.60 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -7.75 Total: 4.03 kcal Atomic # 6 Polarization: -27.81 SS G_CDS: -1.77 Total: -29.58 kcal Atomic # 7 Polarization: -47.71 SS G_CDS: 0.34 Total: -47.37 kcal Atomic # 8 Polarization: -43.18 SS G_CDS: -2.03 Total: -45.21 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: 50.88 SS G_CDS: -0.56 Total: 50.32 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.83 -10.77 -45.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001621918669.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.197 kcal (2) G-P(sol) polarization free energy of solvation -34.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds