Wall clock time and date at job start Sat Apr 11 2020 06:20:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13593 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46890 * 109.47450 * 307.86784 * 3 2 1 5 5 C 1.46854 * 110.99994 * 170.00060 * 4 3 2 6 6 C 1.53034 * 109.52130 * 185.83973 * 5 4 3 7 7 C 1.53126 * 109.28130 * 300.81899 * 6 5 4 8 8 C 1.52993 * 109.52465 * 177.56118 * 7 6 5 9 9 N 1.46498 * 109.47472 * 175.00176 * 8 7 6 10 10 S 1.65601 * 120.00315 * 165.27589 * 9 8 7 11 11 O 1.42102 * 104.27710 * 180.79984 * 10 9 8 12 12 O 1.42101 * 104.27317 * 308.65327 * 10 9 8 13 13 C 1.81389 * 104.44936 * 64.72563 * 10 9 8 14 14 C 1.53007 * 109.47309 * 173.81201 * 13 10 9 15 15 C 1.50700 * 115.54854 * 65.19124 * 14 13 10 16 16 H 1.07999 * 120.00034 * 264.78379 * 15 14 13 17 17 C 1.37876 * 119.99863 * 84.78912 * 15 14 13 18 18 N 1.31516 * 120.00071 * 352.22587 * 17 15 14 19 19 Si 1.86803 * 119.99795 * 172.22501 * 17 15 14 20 20 H 1.48495 * 109.47397 * 60.00211 * 19 17 15 21 21 H 1.48501 * 109.46768 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47267 * 299.99664 * 19 17 15 23 23 C 1.53002 * 117.49610 * 279.52810 * 14 13 10 24 24 C 1.52995 * 117.49864 * 210.86683 * 14 13 10 25 25 C 1.53121 * 109.15642 * 57.65549 * 7 6 5 26 26 C 1.46849 * 110.99945 * 294.21019 * 4 3 2 27 27 H 1.09007 * 109.46722 * 187.86878 * 3 2 1 28 28 H 1.09001 * 109.47126 * 67.87089 * 3 2 1 29 29 H 1.08998 * 109.45991 * 65.82629 * 5 4 3 30 30 H 1.08993 * 109.45510 * 305.85133 * 5 4 3 31 31 H 1.09005 * 109.50506 * 180.88389 * 6 5 4 32 32 H 1.09000 * 109.50878 * 60.76290 * 6 5 4 33 33 H 1.09002 * 109.52173 * 297.69315 * 7 6 5 34 34 H 1.08997 * 109.47469 * 54.99992 * 8 7 6 35 35 H 1.08999 * 109.47488 * 295.00142 * 8 7 6 36 36 H 0.97001 * 119.99696 * 345.00454 * 9 8 7 37 37 H 1.09006 * 109.47337 * 293.80721 * 13 10 9 38 38 H 1.09002 * 109.47632 * 53.81361 * 13 10 9 39 39 H 0.97003 * 120.00122 * 185.02862 * 18 17 15 40 40 H 1.08996 * 117.49740 * 359.97438 * 23 14 13 41 41 H 1.09000 * 117.49983 * 145.01990 * 23 14 13 42 42 H 1.09000 * 117.49768 * 214.97541 * 24 14 13 43 43 H 1.09001 * 117.49907 * 359.97251 * 24 14 13 44 44 H 1.09003 * 109.50328 * 62.28838 * 25 7 6 45 45 H 1.09004 * 109.50420 * 182.40243 * 25 7 6 46 46 H 1.08998 * 109.46498 * 294.17725 * 26 4 3 47 47 H 1.08997 * 109.46228 * 54.15651 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0981 -0.8492 1.0933 5 6 4.5465 -1.0648 0.9835 6 6 4.9965 -2.0675 2.0483 7 6 4.6464 -1.5228 3.4359 8 6 5.0388 -2.5479 4.5016 9 7 4.8144 -1.9789 5.8328 10 16 4.7999 -2.9649 7.1632 11 8 4.5413 -2.0851 8.2487 12 8 3.8853 -3.9981 6.8236 13 6 6.4896 -3.6174 7.2613 14 6 6.6488 -4.4295 8.5483 15 6 5.8153 -5.6821 8.6337 16 1 4.8582 -5.6608 9.1336 17 6 6.2747 -6.8553 8.0736 18 7 7.3629 -6.8495 7.3351 19 14 5.3514 -8.4530 8.3640 20 1 3.9662 -8.3257 7.8442 21 1 6.0452 -9.5607 7.6591 22 1 5.3092 -8.7429 9.8198 23 6 6.8974 -3.6566 9.8451 24 6 8.0326 -4.4558 9.2003 25 6 3.1394 -1.2614 3.5076 26 6 2.7432 -0.2819 2.4004 27 1 2.9708 1.0189 0.1407 28 1 2.9715 -0.3863 -0.9520 29 1 5.0668 -0.1186 1.1327 30 1 4.7813 -1.4562 -0.0063 31 1 6.0741 -2.2154 1.9768 32 1 4.4869 -3.0182 1.8915 33 1 5.1871 -0.5922 3.6089 34 1 6.0922 -2.8042 4.3890 35 1 4.4319 -3.4456 4.3833 36 1 4.6781 -1.0240 5.9354 37 1 6.6821 -4.2585 6.4010 38 1 7.1991 -2.7899 7.2638 39 1 7.6456 -7.6590 6.8816 40 1 6.9479 -2.5696 9.7813 41 1 6.4585 -4.0543 10.7601 42 1 8.3400 -5.3790 9.6914 43 1 8.8297 -3.8949 8.7123 44 1 2.6006 -2.1994 3.3736 45 1 2.8900 -0.8333 4.4785 46 1 3.2719 0.6606 2.5430 47 1 1.6684 -0.1049 2.4398 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001621918669.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:06 Heat of formation + Delta-G solvation = -50.234657 kcal Electronic energy + Delta-G solvation = -27985.369619 eV Core-core repulsion = 24101.722888 eV Total energy + Delta-G solvation = -3883.646731 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.32125 -38.54811 -37.98422 -37.75857 -36.78597 -36.54108 -34.07434 -33.71536 -31.72013 -29.82081 -29.27017 -27.47431 -26.14244 -24.11378 -22.97742 -22.75476 -21.52195 -20.75129 -20.05114 -18.57584 -18.38370 -18.32009 -17.23786 -16.94589 -16.77729 -16.65575 -16.24182 -15.90305 -15.58780 -15.37661 -15.20559 -14.91124 -14.71542 -14.39149 -14.14490 -13.78480 -13.67850 -13.59054 -13.43867 -13.30618 -13.11421 -12.92794 -12.89995 -12.87298 -12.84566 -12.74604 -12.43019 -12.33921 -12.19386 -12.02825 -11.89308 -11.57818 -11.51729 -11.29947 -11.18863 -10.86643 -10.53692 -10.39435 -9.83232 -9.29573 -8.18690 -6.32711 -0.46010 1.39465 1.41080 1.48402 1.66058 1.84462 2.11046 2.40337 2.97630 2.98638 3.08933 3.23228 3.40427 3.49867 3.74961 3.85931 3.95858 4.05309 4.31362 4.33339 4.35946 4.41921 4.51855 4.53542 4.58156 4.62144 4.65285 4.71233 4.78743 4.84179 4.87696 4.92099 4.99258 5.01202 5.11449 5.20275 5.23376 5.28463 5.38479 5.49412 5.59505 5.60466 5.72759 6.03322 6.11238 6.23693 6.26093 6.63572 6.72673 7.39206 8.88099 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016408 B = 0.002671 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.046804 B =10480.115372 C =10964.725722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C 0.238 3.762 3 C 0.149 3.851 4 N -0.557 5.557 5 C 0.065 3.935 6 C -0.116 4.116 7 C -0.084 4.084 8 C 0.110 3.890 9 N -1.112 6.112 10 S 2.622 3.378 11 O -0.999 6.999 12 O -0.997 6.997 13 C -0.551 4.551 14 C 0.011 3.989 15 C -0.537 4.537 16 H 0.046 0.954 17 C 0.045 3.955 18 N -0.889 5.889 19 Si 0.932 3.068 20 H -0.279 1.279 21 H -0.272 1.272 22 H -0.270 1.270 23 C -0.198 4.198 24 C -0.138 4.138 25 C -0.118 4.118 26 C 0.058 3.942 27 H 0.113 0.887 28 H 0.153 0.847 29 H 0.063 0.937 30 H 0.104 0.896 31 H 0.093 0.907 32 H 0.060 0.940 33 H 0.100 0.900 34 H 0.082 0.918 35 H 0.056 0.944 36 H 0.422 0.578 37 H 0.125 0.875 38 H 0.136 0.864 39 H 0.266 0.734 40 H 0.100 0.900 41 H 0.080 0.920 42 H 0.065 0.935 43 H 0.090 0.910 44 H 0.049 0.951 45 H 0.064 0.936 46 H 0.063 0.937 47 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.409 16.400 -16.609 23.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.178 5.178 2 C -0.080 4.080 3 C 0.019 3.981 4 N -0.284 5.284 5 C -0.062 4.062 6 C -0.154 4.154 7 C -0.104 4.104 8 C -0.016 4.016 9 N -0.874 5.874 10 S 2.720 3.280 11 O -0.989 6.989 12 O -0.987 6.987 13 C -0.683 4.683 14 C 0.009 3.991 15 C -0.574 4.574 16 H 0.064 0.936 17 C -0.158 4.158 18 N -0.525 5.525 19 Si 0.757 3.243 20 H -0.204 1.204 21 H -0.197 1.197 22 H -0.195 1.195 23 C -0.236 4.236 24 C -0.177 4.177 25 C -0.156 4.156 26 C -0.070 4.070 27 H 0.131 0.869 28 H 0.170 0.830 29 H 0.081 0.919 30 H 0.122 0.878 31 H 0.111 0.889 32 H 0.079 0.921 33 H 0.118 0.882 34 H 0.100 0.900 35 H 0.075 0.925 36 H 0.258 0.742 37 H 0.143 0.857 38 H 0.154 0.846 39 H 0.075 0.925 40 H 0.118 0.882 41 H 0.098 0.902 42 H 0.083 0.917 43 H 0.109 0.891 44 H 0.068 0.932 45 H 0.083 0.917 46 H 0.082 0.918 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.097 15.456 -16.197 22.389 hybrid contribution 0.467 -0.343 0.407 0.708 sum 0.370 15.113 -15.791 21.861 Atomic orbital electron populations 1.81260 1.15432 1.10946 1.10199 1.29825 0.95858 0.90944 0.91340 1.19908 0.79358 1.00204 0.98581 1.61765 1.16701 1.48187 1.01698 1.22151 0.84202 0.99230 1.00598 1.21672 1.02311 0.99251 0.92192 1.21393 0.95815 0.98844 0.94314 1.21576 1.01642 0.97243 0.81105 1.55391 1.90324 1.21473 1.20197 1.04322 0.77999 0.73087 0.72630 1.93458 1.85613 1.65396 1.54437 1.93483 1.61664 1.60237 1.83307 1.29853 1.21635 1.09416 1.07441 1.18402 0.98808 0.94640 0.87281 1.20670 1.04132 0.93958 1.38652 0.93612 1.25471 0.95181 1.01058 0.94110 1.69997 1.23502 1.29427 1.29586 0.86015 0.79180 0.80190 0.78890 1.20432 1.19680 1.19465 1.23247 1.04788 0.97905 0.97620 1.22519 0.91600 0.99866 1.03712 1.21660 0.96242 0.99647 0.98071 1.22095 0.99974 0.96511 0.88403 0.86908 0.82976 0.91872 0.87781 0.88860 0.92122 0.88165 0.89954 0.92525 0.74159 0.85718 0.84579 0.92469 0.88190 0.90183 0.91654 0.89131 0.93207 0.91691 0.91845 0.92702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -11.98 18.54 20.01 0.37 -11.61 16 2 C 0.24 3.69 14.43 89.44 1.29 4.98 16 3 C 0.15 0.77 5.46 84.50 0.46 1.23 16 4 N -0.56 -5.71 4.63 -907.47 -4.21 -9.91 16 5 C 0.06 0.39 5.46 86.32 0.47 0.86 16 6 C -0.12 -1.30 5.38 30.65 0.16 -1.13 16 7 C -0.08 -1.24 2.28 -10.71 -0.02 -1.27 16 8 C 0.11 2.48 5.52 86.38 0.48 2.95 16 9 N -1.11 -29.04 5.46 -187.51 -1.02 -30.06 16 10 S 2.62 102.11 5.19 -56.49 -0.29 101.82 16 11 O -1.00 -42.46 18.08 -127.65 -2.31 -44.77 16 12 O -1.00 -48.27 17.18 -127.65 -2.19 -50.46 16 13 C -0.55 -21.72 5.92 71.98 0.43 -21.29 16 14 C 0.01 0.52 1.32 -52.93 -0.07 0.45 16 15 C -0.54 -29.69 8.18 25.60 0.21 -29.48 16 16 H 0.05 2.65 7.83 -2.91 -0.02 2.63 16 17 C 0.05 2.46 5.38 84.65 0.46 2.91 16 18 N -0.89 -48.16 12.98 21.45 0.28 -47.88 16 19 Si 0.93 43.98 29.55 68.60 2.03 46.01 16 20 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 21 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 22 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 23 C -0.20 -8.42 9.96 30.62 0.30 -8.11 16 24 C -0.14 -6.05 9.49 30.62 0.29 -5.76 16 25 C -0.12 -2.14 5.24 30.65 0.16 -1.98 16 26 C 0.06 0.77 5.30 86.33 0.46 1.23 16 27 H 0.11 -0.04 8.12 -2.38 -0.02 -0.06 16 28 H 0.15 -0.11 7.99 -2.39 -0.02 -0.13 16 29 H 0.06 0.16 8.14 -2.39 -0.02 0.14 16 30 H 0.10 0.25 8.01 -2.39 -0.02 0.23 16 31 H 0.09 0.77 8.14 -2.38 -0.02 0.75 16 32 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.06 1.58 7.71 -2.39 -0.02 1.56 16 36 H 0.42 8.65 8.37 -96.74 -0.81 7.84 16 37 H 0.12 5.14 8.14 -2.39 -0.02 5.12 16 38 H 0.14 4.21 8.09 -2.39 -0.02 4.20 16 39 H 0.27 13.71 8.32 -92.71 -0.77 12.94 16 40 H 0.10 3.70 8.14 -2.39 -0.02 3.68 16 41 H 0.08 3.44 8.14 -2.39 -0.02 3.42 16 42 H 0.06 3.10 8.14 -2.39 -0.02 3.08 16 43 H 0.09 3.48 8.14 -2.39 -0.02 3.46 16 44 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 45 H 0.06 1.25 7.64 -2.38 -0.02 1.23 16 46 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 47 H 0.05 0.92 7.11 -2.39 -0.02 0.91 16 Total: -1.00 -78.90 399.13 -2.12 -81.02 By element: Atomic # 1 Polarization: 20.11 SS G_CDS: 0.15 Total: 20.26 kcal Atomic # 6 Polarization: -59.49 SS G_CDS: 5.08 Total: -54.41 kcal Atomic # 7 Polarization: -94.89 SS G_CDS: -4.58 Total: -99.47 kcal Atomic # 8 Polarization: -90.73 SS G_CDS: -4.50 Total: -95.23 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Atomic # 16 Polarization: 102.11 SS G_CDS: -0.29 Total: 101.82 kcal Total: -78.90 -2.12 -81.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001621918669.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.788 kcal (2) G-P(sol) polarization free energy of solvation -78.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds