Wall clock time and date at job start Sat Apr 11 2020 06:20:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86803 * 120.00111 * 2 1 4 4 H 1.48494 * 109.47113 * 239.99919 * 3 2 1 5 5 H 1.48497 * 109.47174 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47146 * 119.99876 * 3 2 1 7 7 C 1.38803 * 120.00273 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00023 * 180.02562 * 7 2 1 9 9 S 1.76201 * 119.99622 * 0.02562 * 7 2 1 10 10 C 1.81000 * 99.99858 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.46848 * 179.97438 * 10 9 7 12 12 O 1.21286 * 120.00484 * 0.02562 * 11 10 9 13 13 N 1.34776 * 119.99908 * 180.02562 * 11 10 9 14 14 C 1.46503 * 120.00125 * 180.02562 * 13 11 10 15 15 C 1.53001 * 109.47228 * 180.02562 * 14 13 11 16 16 H 1.08997 * 109.47435 * 64.99292 * 15 14 13 17 17 N 1.46907 * 109.46744 * 304.99504 * 15 14 13 18 18 C 1.46899 * 110.99951 * 301.49623 * 17 15 14 19 19 C 1.50697 * 109.46703 * 185.06277 * 18 17 15 20 20 O 1.21274 * 120.00377 * 359.97438 * 19 18 17 21 21 N 1.34782 * 119.99946 * 180.02562 * 19 18 17 22 22 C 1.47073 * 136.05433 * 359.62145 * 21 19 18 23 23 C 1.53235 * 88.08026 * 207.21076 * 22 21 19 24 24 C 1.47061 * 136.06044 * 180.02562 * 21 19 18 25 25 C 1.52996 * 109.47253 * 184.99893 * 15 14 13 26 26 C 1.53002 * 117.49801 * 253.76520 * 25 15 14 27 27 C 1.53001 * 117.49915 * 185.10729 * 25 15 14 28 28 H 0.96998 * 119.99733 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.47056 * 60.00443 * 10 9 7 30 30 H 1.08996 * 109.46961 * 300.00003 * 10 9 7 31 31 H 0.96996 * 120.00031 * 359.97438 * 13 11 10 32 32 H 1.09006 * 109.46982 * 299.99546 * 14 13 11 33 33 H 1.08999 * 109.47270 * 59.99573 * 14 13 11 34 34 H 1.00904 * 110.99761 * 65.45466 * 17 15 14 35 35 H 1.09001 * 109.47229 * 305.06519 * 18 17 15 36 36 H 1.08997 * 109.46735 * 65.06196 * 18 17 15 37 37 H 1.09001 * 113.46938 * 321.94539 * 22 21 19 38 38 H 1.08998 * 113.46821 * 92.37804 * 22 21 19 39 39 H 1.09001 * 114.32504 * 220.46908 * 23 22 21 40 40 H 1.08999 * 114.02064 * 87.72091 * 23 22 21 41 41 H 1.09003 * 113.46776 * 267.61590 * 24 21 19 42 42 H 1.08996 * 113.46887 * 38.05838 * 24 21 19 43 43 H 1.09002 * 115.54952 * 39.43227 * 25 15 14 44 44 H 1.09009 * 117.49713 * 0.02562 * 26 25 15 45 45 H 1.09004 * 117.49930 * 145.01498 * 26 25 15 46 46 H 1.09003 * 117.49769 * 214.97557 * 27 25 15 47 47 H 1.08996 * 117.49936 * 359.97084 * 27 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6964 -1.2124 5 1 1.2854 2.7465 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0104 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1293 -2.7280 0.0005 10 6 2.5159 -3.8914 0.0005 11 6 1.9874 -5.3026 0.0012 12 8 0.7910 -5.5023 0.0011 13 7 2.8441 -6.3431 0.0018 14 6 2.3303 -7.7151 0.0019 15 6 3.5024 -8.6986 0.0033 16 1 4.0591 -8.5990 0.9350 17 7 4.3890 -8.4052 -1.1307 18 6 3.6623 -8.4951 -2.4042 19 6 4.6272 -8.3114 -3.5471 20 8 5.8041 -8.1236 -3.3229 21 7 4.1820 -8.3548 -4.8185 22 6 2.8840 -8.5581 -5.4796 23 6 3.6451 -9.1091 -6.6901 24 6 4.7813 -8.2267 -6.1553 25 6 2.9695 -10.1272 -0.1224 26 6 3.0043 -11.0068 1.1291 27 6 3.9813 -11.2702 -0.0195 28 1 -0.4849 0.8400 -0.0004 29 1 3.1244 -3.7314 0.8906 30 1 3.1244 -3.7313 -0.8894 31 1 3.8008 -6.1835 0.0015 32 1 1.7213 -7.8749 0.8917 33 1 1.7221 -7.8753 -0.8883 34 1 4.8236 -7.5006 -1.0253 35 1 3.1873 -9.4729 -2.4832 36 1 2.9003 -7.7168 -2.4433 37 1 2.2578 -9.3020 -4.9871 38 1 2.3523 -7.6295 -5.6869 39 1 3.2472 -8.7905 -7.6536 40 1 3.8476 -10.1788 -6.6376 41 1 4.7604 -7.2088 -6.5447 42 1 5.7648 -8.6895 -6.2362 43 1 2.1306 -10.2576 -0.8060 44 1 3.4065 -10.5674 2.0420 45 1 2.1885 -11.7161 1.2686 46 1 3.8079 -12.1528 -0.6351 47 1 5.0267 -11.0044 0.1373 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001661105963.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:13 Heat of formation + Delta-G solvation = 0.711390 kcal Electronic energy + Delta-G solvation = -27181.413136 eV Core-core repulsion = 23299.975591 eV Total energy + Delta-G solvation = -3881.437545 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.63023 -39.73906 -38.54217 -37.80756 -35.60700 -33.60046 -32.44945 -30.85206 -29.97064 -28.35416 -26.67937 -25.86171 -25.47992 -23.36104 -22.56462 -22.44074 -20.51604 -20.00710 -19.18791 -17.94011 -17.71517 -16.79095 -16.54166 -16.44715 -16.09356 -15.69863 -15.51965 -15.18910 -14.82193 -14.55860 -14.35059 -14.06907 -13.80776 -13.58350 -13.23548 -13.09462 -12.98959 -12.90631 -12.62366 -12.39074 -12.25568 -11.92623 -11.75808 -11.72026 -11.28868 -11.15701 -11.06796 -11.05097 -10.79482 -10.57411 -10.49838 -9.99774 -9.85189 -9.48542 -9.09089 -9.02881 -9.00565 -8.76681 -8.27914 -6.53152 -6.23748 -3.94757 2.37082 2.50725 2.94017 3.01640 3.22524 3.25220 3.28172 3.42173 3.66142 3.87638 3.99636 4.18570 4.23202 4.28959 4.54084 4.55789 4.72905 4.74017 4.84337 4.93985 5.00438 5.03307 5.04871 5.06519 5.11429 5.13980 5.18276 5.22386 5.31258 5.41294 5.42895 5.52201 5.56581 5.68882 5.72157 5.75150 5.84116 5.87544 5.96754 6.10040 6.42793 6.56395 6.96342 7.42684 7.56000 7.58133 7.96183 8.33123 8.51869 9.21611 10.83633 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009703 B = 0.002665 C = 0.002256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2884.933904 B =10503.298452 C =12405.664996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.274 1.274 7 C -0.537 4.537 8 H 0.072 0.928 9 S -0.059 6.059 10 C -0.154 4.154 11 C 0.533 3.467 12 O -0.515 6.515 13 N -0.742 5.742 14 C 0.087 3.913 15 C 0.110 3.890 16 H 0.096 0.904 17 N -0.658 5.658 18 C 0.044 3.956 19 C 0.543 3.457 20 O -0.525 6.525 21 N -0.654 5.654 22 C 0.097 3.903 23 C -0.156 4.156 24 C 0.104 3.896 25 C -0.150 4.150 26 C -0.176 4.176 27 C -0.158 4.158 28 H 0.269 0.731 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.395 0.605 32 H 0.075 0.925 33 H 0.067 0.933 34 H 0.349 0.651 35 H 0.103 0.897 36 H 0.067 0.933 37 H 0.078 0.922 38 H 0.089 0.911 39 H 0.091 0.909 40 H 0.094 0.906 41 H 0.085 0.915 42 H 0.077 0.923 43 H 0.103 0.897 44 H 0.095 0.905 45 H 0.095 0.905 46 H 0.090 0.910 47 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.733 -24.079 -8.541 26.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.685 4.685 8 H 0.090 0.910 9 S 0.168 5.832 10 C -0.305 4.305 11 C 0.319 3.681 12 O -0.389 6.389 13 N -0.398 5.398 14 C -0.039 4.039 15 C 0.000 4.000 16 H 0.114 0.886 17 N -0.290 5.290 18 C -0.088 4.088 19 C 0.332 3.668 20 O -0.400 6.400 21 N -0.392 5.392 22 C -0.026 4.026 23 C -0.194 4.194 24 C -0.019 4.019 25 C -0.169 4.169 26 C -0.213 4.213 27 C -0.195 4.195 28 H 0.079 0.921 29 H 0.109 0.891 30 H 0.107 0.893 31 H 0.229 0.771 32 H 0.093 0.907 33 H 0.085 0.915 34 H 0.170 0.830 35 H 0.121 0.879 36 H 0.084 0.916 37 H 0.097 0.903 38 H 0.107 0.893 39 H 0.110 0.890 40 H 0.112 0.888 41 H 0.103 0.897 42 H 0.095 0.905 43 H 0.122 0.878 44 H 0.114 0.886 45 H 0.113 0.887 46 H 0.109 0.891 47 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 6.538 -24.816 -8.198 26.941 hybrid contribution 1.737 2.259 -0.008 2.850 sum 8.275 -22.557 -8.206 25.389 Atomic orbital electron populations 1.70005 1.05954 1.27598 1.46767 1.24990 0.95033 0.99031 0.94473 0.86221 0.79243 0.81184 0.78851 1.19926 1.20781 1.19898 1.22829 0.94894 0.91633 1.59127 0.90961 1.85366 1.04809 0.96317 1.96736 1.23540 1.06668 0.95327 1.04971 1.20319 0.86481 0.86238 0.75023 1.90706 1.15291 1.85589 1.47282 1.46032 1.09857 1.05556 1.78328 1.21980 0.97275 0.81482 1.03126 1.21447 0.91685 0.92388 0.94513 0.88584 1.60300 1.31319 1.37710 0.99675 1.21748 0.94878 1.03590 0.88623 1.20216 0.89155 0.75814 0.81566 1.90717 1.17592 1.48416 1.83245 1.49701 1.12236 1.72865 1.04428 1.22990 0.87590 1.00924 0.91071 1.23340 0.97072 1.00662 0.98304 1.22916 0.98672 1.00120 0.80173 1.22077 1.01904 0.90800 1.02133 1.23022 1.02604 1.02799 0.92897 1.22823 0.96764 0.98572 1.01324 0.92107 0.89133 0.89296 0.77099 0.90720 0.91473 0.83029 0.87878 0.91555 0.90337 0.89305 0.89004 0.88793 0.89704 0.90479 0.87849 0.88608 0.88701 0.89143 0.88126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.15 13.22 55.49 0.73 -25.41 16 2 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 3 Si 0.92 21.47 29.55 -169.99 -5.02 16.44 16 4 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 7 C -0.54 -15.32 9.50 30.94 0.29 -15.03 16 8 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 9 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 10 C -0.15 -3.11 6.16 36.00 0.22 -2.89 16 11 C 0.53 9.77 7.85 -10.99 -0.09 9.69 16 12 O -0.51 -11.47 15.86 5.55 0.09 -11.38 16 13 N -0.74 -9.58 5.35 -60.29 -0.32 -9.91 16 14 C 0.09 0.96 4.60 -4.04 -0.02 0.95 16 15 C 0.11 0.94 2.88 -67.71 -0.19 0.75 16 16 H 0.10 0.80 7.94 -51.93 -0.41 0.39 16 17 N -0.66 -6.41 5.87 -107.99 -0.63 -7.04 16 18 C 0.04 0.42 5.22 -4.98 -0.03 0.40 16 19 C 0.54 6.53 8.13 -10.98 -0.09 6.44 16 20 O -0.52 -8.30 17.09 5.56 0.10 -8.20 16 21 N -0.65 -6.23 3.69 -185.45 -0.68 -6.91 16 22 C 0.10 0.59 8.40 -8.64 -0.07 0.52 16 23 C -0.16 -0.71 8.48 -26.36 -0.22 -0.93 16 24 C 0.10 0.76 8.61 -8.52 -0.07 0.69 16 25 C -0.15 -1.15 4.03 -90.62 -0.36 -1.51 16 26 C -0.18 -1.22 10.18 -26.69 -0.27 -1.49 16 27 C -0.16 -1.17 10.21 -26.69 -0.27 -1.44 16 28 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 29 H 0.09 1.70 8.14 -51.91 -0.42 1.27 16 30 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 31 H 0.39 4.20 7.17 -40.82 -0.29 3.91 16 32 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.07 0.79 6.78 -51.93 -0.35 0.43 16 34 H 0.35 3.61 7.21 -39.29 -0.28 3.33 16 35 H 0.10 0.85 6.68 -51.93 -0.35 0.50 16 36 H 0.07 0.68 6.68 -51.93 -0.35 0.34 16 37 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 40 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.10 0.76 7.68 -51.93 -0.40 0.36 16 44 H 0.10 0.65 8.08 -51.92 -0.42 0.23 16 45 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 LS Contribution 404.31 15.07 6.09 6.09 Total: -1.00 -36.93 404.31 -10.61 -47.54 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -7.47 Total: 4.44 kcal Atomic # 6 Polarization: -0.58 SS G_CDS: -1.27 Total: -1.86 kcal Atomic # 7 Polarization: -48.36 SS G_CDS: -0.91 Total: -49.27 kcal Atomic # 8 Polarization: -19.76 SS G_CDS: 0.18 Total: -19.58 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -36.93 -10.61 -47.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661105963.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.249 kcal (2) G-P(sol) polarization free energy of solvation -36.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds