Wall clock time and date at job start Sat Apr 11 2020 06:20:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86803 * 120.00111 * 2 1 4 4 H 1.48494 * 109.47113 * 239.99919 * 3 2 1 5 5 H 1.48497 * 109.47174 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47146 * 119.99876 * 3 2 1 7 7 C 1.38803 * 120.00273 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00023 * 180.02562 * 7 2 1 9 9 S 1.76201 * 119.99622 * 0.02562 * 7 2 1 10 10 C 1.81000 * 99.99858 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.46848 * 179.97438 * 10 9 7 12 12 O 1.21286 * 120.00484 * 0.02562 * 11 10 9 13 13 N 1.34776 * 119.99908 * 180.02562 * 11 10 9 14 14 C 1.46503 * 120.00125 * 180.02562 * 13 11 10 15 15 C 1.53001 * 109.47228 * 180.02562 * 14 13 11 16 16 H 1.08997 * 109.47435 * 64.99292 * 15 14 13 17 17 N 1.46907 * 109.46744 * 304.99504 * 15 14 13 18 18 C 1.46899 * 110.99951 * 301.49623 * 17 15 14 19 19 C 1.50697 * 109.46703 * 185.06277 * 18 17 15 20 20 O 1.21274 * 120.00377 * 359.97438 * 19 18 17 21 21 N 1.34782 * 119.99946 * 180.02562 * 19 18 17 22 22 C 1.47073 * 136.05433 * 359.62145 * 21 19 18 23 23 C 1.53235 * 88.08026 * 207.21076 * 22 21 19 24 24 C 1.47061 * 136.06044 * 180.02562 * 21 19 18 25 25 C 1.52996 * 109.47253 * 184.99893 * 15 14 13 26 26 C 1.53002 * 117.49801 * 253.76520 * 25 15 14 27 27 C 1.53001 * 117.49915 * 185.10729 * 25 15 14 28 28 H 0.96998 * 119.99733 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.47056 * 60.00443 * 10 9 7 30 30 H 1.08996 * 109.46961 * 300.00003 * 10 9 7 31 31 H 0.96996 * 120.00031 * 359.97438 * 13 11 10 32 32 H 1.09006 * 109.46982 * 299.99546 * 14 13 11 33 33 H 1.08999 * 109.47270 * 59.99573 * 14 13 11 34 34 H 1.00904 * 110.99761 * 65.45466 * 17 15 14 35 35 H 1.09001 * 109.47229 * 305.06519 * 18 17 15 36 36 H 1.08997 * 109.46735 * 65.06196 * 18 17 15 37 37 H 1.09001 * 113.46938 * 321.94539 * 22 21 19 38 38 H 1.08998 * 113.46821 * 92.37804 * 22 21 19 39 39 H 1.09001 * 114.32504 * 220.46908 * 23 22 21 40 40 H 1.08999 * 114.02064 * 87.72091 * 23 22 21 41 41 H 1.09003 * 113.46776 * 267.61590 * 24 21 19 42 42 H 1.08996 * 113.46887 * 38.05838 * 24 21 19 43 43 H 1.09002 * 115.54952 * 39.43227 * 25 15 14 44 44 H 1.09009 * 117.49713 * 0.02562 * 26 25 15 45 45 H 1.09004 * 117.49930 * 145.01498 * 26 25 15 46 46 H 1.09003 * 117.49769 * 214.97557 * 27 25 15 47 47 H 1.08996 * 117.49936 * 359.97084 * 27 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6964 -1.2124 5 1 1.2854 2.7465 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0104 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1293 -2.7280 0.0005 10 6 2.5159 -3.8914 0.0005 11 6 1.9874 -5.3026 0.0012 12 8 0.7910 -5.5023 0.0011 13 7 2.8441 -6.3431 0.0018 14 6 2.3303 -7.7151 0.0019 15 6 3.5024 -8.6986 0.0033 16 1 4.0591 -8.5990 0.9350 17 7 4.3890 -8.4052 -1.1307 18 6 3.6623 -8.4951 -2.4042 19 6 4.6272 -8.3114 -3.5471 20 8 5.8041 -8.1236 -3.3229 21 7 4.1820 -8.3548 -4.8185 22 6 2.8840 -8.5581 -5.4796 23 6 3.6451 -9.1091 -6.6901 24 6 4.7813 -8.2267 -6.1553 25 6 2.9695 -10.1272 -0.1224 26 6 3.0043 -11.0068 1.1291 27 6 3.9813 -11.2702 -0.0195 28 1 -0.4849 0.8400 -0.0004 29 1 3.1244 -3.7314 0.8906 30 1 3.1244 -3.7313 -0.8894 31 1 3.8008 -6.1835 0.0015 32 1 1.7213 -7.8749 0.8917 33 1 1.7221 -7.8753 -0.8883 34 1 4.8236 -7.5006 -1.0253 35 1 3.1873 -9.4729 -2.4832 36 1 2.9003 -7.7168 -2.4433 37 1 2.2578 -9.3020 -4.9871 38 1 2.3523 -7.6295 -5.6869 39 1 3.2472 -8.7905 -7.6536 40 1 3.8476 -10.1788 -6.6376 41 1 4.7604 -7.2088 -6.5447 42 1 5.7648 -8.6895 -6.2362 43 1 2.1306 -10.2576 -0.8060 44 1 3.4065 -10.5674 2.0420 45 1 2.1885 -11.7161 1.2686 46 1 3.8079 -12.1528 -0.6351 47 1 5.0267 -11.0044 0.1373 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001661105963.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:13 Heat of formation + Delta-G solvation = -26.786202 kcal Electronic energy + Delta-G solvation = -27182.605521 eV Core-core repulsion = 23299.975591 eV Total energy + Delta-G solvation = -3882.629930 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.39828 -40.84453 -39.54259 -38.62449 -36.48048 -34.73374 -34.60053 -31.83863 -31.10450 -29.39770 -27.72134 -27.33333 -26.52255 -24.22029 -23.14456 -23.04402 -21.78172 -20.79007 -19.93913 -19.82160 -18.46344 -18.00629 -17.45395 -17.42755 -17.14341 -16.90042 -16.71841 -16.36216 -16.09419 -15.90471 -15.41885 -15.16187 -14.90034 -14.65838 -14.40015 -14.23389 -14.03705 -13.64745 -13.54073 -13.48493 -13.19851 -13.08957 -12.91854 -12.85217 -12.64872 -12.39144 -12.29879 -12.00177 -11.77612 -11.68149 -11.22739 -11.15444 -11.11336 -10.95656 -10.87474 -10.32563 -10.24101 -9.76737 -9.55990 -8.69480 -8.37103 -6.15330 1.23196 1.41883 1.43601 1.53390 1.53666 1.54129 1.77707 2.16126 2.25236 2.79686 2.96960 3.24988 3.28878 3.43540 3.53030 3.56164 3.80214 3.93694 4.06616 4.11491 4.17256 4.20069 4.24642 4.25774 4.32581 4.36758 4.45197 4.45707 4.49117 4.59411 4.64118 4.67436 4.81948 4.84788 4.90093 4.98704 5.12255 5.26250 5.29217 5.32471 5.37974 5.39241 5.77154 6.14985 6.17159 6.34408 6.69123 7.04232 7.10405 7.13302 8.71829 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009703 B = 0.002665 C = 0.002256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2884.933904 B =10503.298452 C =12405.664996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.015 3.985 3 Si 0.997 3.003 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.550 4.550 8 H 0.081 0.919 9 S -0.143 6.143 10 C -0.133 4.133 11 C 0.537 3.463 12 O -0.559 6.559 13 N -0.716 5.716 14 C 0.090 3.910 15 C 0.124 3.876 16 H 0.104 0.896 17 N -0.662 5.662 18 C 0.053 3.947 19 C 0.533 3.467 20 O -0.575 6.575 21 N -0.663 5.663 22 C 0.092 3.908 23 C -0.133 4.133 24 C 0.090 3.910 25 C -0.157 4.157 26 C -0.170 4.170 27 C -0.157 4.157 28 H 0.272 0.728 29 H 0.108 0.892 30 H 0.105 0.895 31 H 0.409 0.591 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.345 0.655 35 H 0.120 0.880 36 H 0.061 0.939 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.116 0.884 40 H 0.100 0.900 41 H 0.090 0.910 42 H 0.066 0.934 43 H 0.110 0.890 44 H 0.098 0.902 45 H 0.104 0.896 46 H 0.098 0.902 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.751 -25.003 -9.091 28.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.190 4.190 3 Si 0.818 3.182 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.187 1.187 7 C -0.698 4.698 8 H 0.099 0.901 9 S 0.084 5.916 10 C -0.284 4.284 11 C 0.323 3.677 12 O -0.437 6.437 13 N -0.371 5.371 14 C -0.036 4.036 15 C 0.014 3.986 16 H 0.122 0.878 17 N -0.293 5.293 18 C -0.079 4.079 19 C 0.323 3.677 20 O -0.454 6.454 21 N -0.399 5.399 22 C -0.030 4.030 23 C -0.171 4.171 24 C -0.033 4.033 25 C -0.176 4.176 26 C -0.207 4.207 27 C -0.194 4.194 28 H 0.081 0.919 29 H 0.127 0.873 30 H 0.123 0.877 31 H 0.246 0.754 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.165 0.835 35 H 0.138 0.862 36 H 0.079 0.921 37 H 0.111 0.889 38 H 0.112 0.888 39 H 0.134 0.866 40 H 0.118 0.882 41 H 0.108 0.892 42 H 0.085 0.915 43 H 0.128 0.872 44 H 0.116 0.884 45 H 0.123 0.877 46 H 0.117 0.883 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 7.572 -25.789 -8.780 28.275 hybrid contribution 1.458 2.409 0.107 2.818 sum 9.030 -23.380 -8.673 26.521 Atomic orbital electron populations 1.70163 1.07891 1.28734 1.47813 1.26101 0.95970 1.03223 0.93662 0.85029 0.77857 0.75820 0.79462 1.18772 1.20196 1.18727 1.23170 0.95302 0.92147 1.59153 0.90131 1.85494 1.10118 0.98964 1.97049 1.23386 1.03766 0.94662 1.06574 1.19985 0.86197 0.86479 0.75037 1.90696 1.17124 1.86021 1.49826 1.45761 1.10020 1.05364 1.75948 1.22126 0.98282 0.80403 1.02750 1.21391 0.90451 0.92337 0.94467 0.87819 1.60324 1.31509 1.37461 1.00010 1.21701 0.94050 1.04198 0.87923 1.20631 0.88851 0.75356 0.82841 1.90680 1.19485 1.50994 1.84216 1.49956 1.14285 1.71299 1.04394 1.23244 0.86644 1.01772 0.91306 1.23283 0.94677 1.00409 0.98711 1.23172 0.99351 1.01170 0.79574 1.22073 1.02311 0.90052 1.03120 1.23094 1.02578 1.02424 0.92618 1.22810 0.96200 0.98579 1.01797 0.91904 0.87332 0.87683 0.75402 0.91227 0.91746 0.83514 0.86241 0.92071 0.88867 0.88797 0.86578 0.88161 0.89234 0.91494 0.87242 0.88401 0.87735 0.88321 0.89097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.74 13.22 21.65 0.29 -55.45 16 2 C 0.02 0.88 5.49 84.86 0.47 1.35 16 3 Si 1.00 43.72 29.55 68.60 2.03 45.75 16 4 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 5 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 6 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 7 C -0.55 -31.54 9.50 67.96 0.65 -30.89 16 8 H 0.08 4.31 7.80 -2.91 -0.02 4.29 16 9 S -0.14 -7.93 20.57 -56.49 -1.16 -9.10 16 10 C -0.13 -5.28 6.16 71.23 0.44 -4.84 16 11 C 0.54 19.43 7.85 87.66 0.69 20.12 16 12 O -0.56 -25.18 15.86 -3.05 -0.05 -25.23 16 13 N -0.72 -17.58 5.35 -463.04 -2.48 -20.06 16 14 C 0.09 1.86 4.60 86.38 0.40 2.26 16 15 C 0.12 1.92 2.88 44.91 0.13 2.05 16 16 H 0.10 1.51 7.94 -2.39 -0.02 1.49 16 17 N -0.66 -12.14 5.87 -495.58 -2.91 -15.05 16 18 C 0.05 0.98 5.22 85.56 0.45 1.42 16 19 C 0.53 12.68 8.13 87.66 0.71 13.39 16 20 O -0.57 -18.49 17.09 -3.01 -0.05 -18.54 16 21 N -0.66 -12.10 3.69 -859.02 -3.17 -15.27 16 22 C 0.09 0.94 8.40 83.09 0.70 1.63 16 23 C -0.13 -0.91 8.48 30.83 0.26 -0.65 16 24 C 0.09 1.25 8.61 83.17 0.72 1.96 16 25 C -0.16 -2.09 4.03 -10.79 -0.04 -2.13 16 26 C -0.17 -2.00 10.18 30.62 0.31 -1.69 16 27 C -0.16 -2.03 10.21 30.62 0.31 -1.72 16 28 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 29 H 0.11 3.92 8.14 -2.39 -0.02 3.90 16 30 H 0.10 3.84 8.14 -2.40 -0.02 3.82 16 31 H 0.41 7.97 7.17 -92.71 -0.66 7.31 16 32 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 33 H 0.06 1.43 6.78 -2.39 -0.02 1.41 16 34 H 0.35 6.80 7.21 -89.69 -0.65 6.16 16 35 H 0.12 1.76 6.68 -2.39 -0.02 1.75 16 36 H 0.06 1.20 6.68 -2.39 -0.02 1.18 16 37 H 0.09 0.68 8.14 -2.39 -0.02 0.67 16 38 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.12 0.29 8.14 -2.39 -0.02 0.27 16 40 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 41 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 43 H 0.11 1.35 7.68 -2.39 -0.02 1.34 16 44 H 0.10 1.13 8.08 -2.38 -0.02 1.11 16 45 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 46 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 47 H 0.09 1.38 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -82.57 404.31 -1.65 -84.22 By element: Atomic # 1 Polarization: 26.77 SS G_CDS: -0.32 Total: 26.45 kcal Atomic # 6 Polarization: -3.91 SS G_CDS: 6.18 Total: 2.27 kcal Atomic # 7 Polarization: -97.56 SS G_CDS: -8.28 Total: -105.83 kcal Atomic # 8 Polarization: -43.66 SS G_CDS: -0.10 Total: -43.76 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Atomic # 16 Polarization: -7.93 SS G_CDS: -1.16 Total: -9.10 kcal Total: -82.57 -1.65 -84.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661105963.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.433 kcal (2) G-P(sol) polarization free energy of solvation -82.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds