Wall clock time and date at job start Sat Apr 11 2020 06:20:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86799 * 120.00010 * 2 1 4 4 H 1.48498 * 109.47123 * 269.99833 * 3 2 1 5 5 H 1.48497 * 109.47329 * 29.99998 * 3 2 1 6 6 H 1.48506 * 109.46940 * 149.99710 * 3 2 1 7 7 C 1.38814 * 120.00063 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99704 * 0.02562 * 7 2 1 9 9 N 1.36936 * 119.99891 * 179.97438 * 7 2 1 10 10 C 1.46504 * 119.99477 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.46883 * 180.02562 * 10 9 7 12 12 H 1.08998 * 110.88188 * 57.43085 * 11 10 9 13 13 C 1.55151 * 111.00243 * 181.35199 * 11 10 9 14 14 C 1.54333 * 102.94087 * 153.57957 * 13 11 10 15 15 N 1.47025 * 107.26889 * 337.80773 * 14 13 11 16 16 C 1.34773 * 125.64434 * 178.98223 * 15 14 13 17 17 O 1.21607 * 119.99702 * 179.97438 * 16 15 14 18 18 C 1.47423 * 120.00259 * 359.94915 * 16 15 14 19 19 C 1.41364 * 126.40499 * 0.03210 * 18 16 15 20 20 N 1.30441 * 108.07734 * 179.97438 * 19 18 16 21 21 N 1.39936 * 108.91888 * 0.02562 * 20 19 18 22 22 C 1.39813 * 125.77774 * 180.02562 * 21 20 19 23 23 C 1.38936 * 119.68868 * 359.69941 * 22 21 20 24 24 C 1.38427 * 119.10555 * 179.75497 * 23 22 21 25 25 C 1.38788 * 118.48132 * 0.50898 * 24 23 22 26 26 C 1.38126 * 119.29430 * 359.72966 * 25 24 23 27 27 N 1.31893 * 120.84652 * 0.02562 * 26 25 24 28 28 C 1.34620 * 108.44203 * 359.74607 * 21 20 19 29 29 C 1.47427 * 108.70462 * 358.93670 * 15 14 13 30 30 H 0.97001 * 119.99776 * 0.02562 * 1 2 3 31 31 H 0.96992 * 120.00556 * 0.02562 * 9 7 2 32 32 H 1.09001 * 109.46891 * 60.00526 * 10 9 7 33 33 H 1.08993 * 109.47378 * 299.99898 * 10 9 7 34 34 H 1.09005 * 110.72175 * 271.93919 * 13 11 10 35 35 H 1.08994 * 110.72573 * 35.21525 * 13 11 10 36 36 H 1.08994 * 109.87957 * 218.39074 * 14 13 11 37 37 H 1.08994 * 109.88221 * 97.22119 * 14 13 11 38 38 H 1.07998 * 125.96075 * 359.95358 * 19 18 16 39 39 H 1.08002 * 120.45026 * 359.97438 * 23 22 21 40 40 H 1.07997 * 120.75693 * 180.22340 * 24 23 22 41 41 H 1.07999 * 120.35379 * 179.70982 * 25 24 23 42 42 H 1.08004 * 119.58294 * 179.97438 * 26 25 24 43 43 H 1.08004 * 126.31656 * 180.24787 * 28 21 20 44 44 H 1.08995 * 110.36983 * 265.29764 * 29 15 14 45 45 H 1.09002 * 110.45687 * 143.01282 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2021 0.0000 10 6 4.1120 -2.4709 0.0011 11 6 5.6163 -2.1914 0.0009 12 1 5.8982 -1.5806 0.8586 13 6 6.4276 -3.5135 -0.0321 14 6 7.7536 -3.0887 -0.6978 15 7 7.4847 -1.8626 -1.4632 16 6 8.3929 -1.1652 -2.1739 17 8 8.0565 -0.1609 -2.7713 18 6 9.7944 -1.6196 -2.2265 19 6 10.3310 -2.7608 -1.5877 20 7 11.6021 -2.8245 -1.8735 21 7 11.9369 -1.7433 -2.6964 22 6 13.2078 -1.4710 -3.2115 23 6 14.2693 -2.3135 -2.9057 24 6 15.5214 -2.0354 -3.4264 25 6 15.6699 -0.9133 -4.2295 26 6 14.5712 -0.1169 -4.4878 27 7 13.3893 -0.4102 -3.9813 28 6 10.8268 -1.0132 -2.9130 29 6 6.0567 -1.5230 -1.3255 30 1 -0.4850 0.8401 -0.0004 31 1 3.8646 -0.3622 -0.0004 32 1 3.8484 -3.0434 -0.8882 33 1 3.8491 -3.0415 0.8918 34 1 6.6043 -3.8829 0.9781 35 1 5.9169 -4.2645 -0.6346 36 1 8.1006 -3.8753 -1.3677 37 1 8.5054 -2.8913 0.0663 38 1 9.7840 -3.4581 -0.9705 39 1 14.1190 -3.1759 -2.2731 40 1 16.3644 -2.6744 -3.2089 41 1 16.6342 -0.6652 -4.6478 42 1 14.6816 0.7577 -5.1118 43 1 10.7573 -0.1170 -3.5116 44 1 5.4878 -1.9289 -2.1619 45 1 5.9260 -0.4424 -1.2674 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001662690480.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:16 Heat of formation + Delta-G solvation = 119.907037 kcal Electronic energy + Delta-G solvation = -28026.988994 eV Core-core repulsion = 24047.568960 eV Total energy + Delta-G solvation = -3979.420034 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.20174 -40.58611 -39.67419 -37.55740 -34.91901 -34.26683 -33.14855 -32.27199 -30.97015 -30.75232 -30.14111 -28.91985 -26.15143 -24.57754 -24.47775 -23.78033 -21.99133 -21.81596 -21.30923 -20.19058 -19.77166 -18.72371 -17.54512 -17.08776 -16.96168 -16.36255 -16.13430 -16.02027 -15.59070 -15.19820 -14.79295 -14.56645 -14.40876 -14.06299 -13.88757 -13.81557 -13.70157 -13.26829 -12.95398 -12.71362 -12.68293 -12.59330 -12.19196 -11.80408 -11.71288 -11.59381 -11.05433 -10.92715 -10.69323 -10.62196 -10.55672 -10.46977 -10.30767 -10.09014 -9.91349 -9.64285 -9.55863 -8.88043 -8.86908 -8.58345 -7.21326 -5.74087 -3.09901 0.04593 0.54746 1.42487 1.52311 1.78683 2.93187 3.15706 3.31897 3.42931 3.46782 3.51065 3.67837 3.90719 4.24342 4.29082 4.39563 4.45625 4.48666 4.56388 4.63306 4.68885 4.78352 4.88074 4.99291 5.09446 5.11872 5.22932 5.34342 5.36447 5.48409 5.50361 5.57452 5.75754 5.79398 5.81587 5.84188 5.89907 5.94017 6.16673 6.20463 6.37414 6.46678 6.61004 6.72963 6.80310 7.30168 7.52131 8.01208 8.19412 8.44717 9.23614 9.96217 10.15179 11.44142 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.024239 B = 0.001998 C = 0.001869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.871326 B =14007.407443 C =14975.669704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.006 3.994 3 Si 0.882 3.118 4 H -0.282 1.282 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.245 4.245 8 H 0.091 0.909 9 N -0.757 5.757 10 C 0.169 3.831 11 C -0.111 4.111 12 H 0.085 0.915 13 C -0.125 4.125 14 C 0.092 3.908 15 N -0.613 5.613 16 C 0.606 3.394 17 O -0.542 6.542 18 C -0.277 4.277 19 C 0.087 3.913 20 N -0.288 5.288 21 N -0.317 5.317 22 C 0.365 3.635 23 C -0.160 4.160 24 C -0.052 4.052 25 C -0.184 4.184 26 C 0.135 3.865 27 N -0.504 5.504 28 C 0.155 3.845 29 C 0.115 3.885 30 H 0.259 0.741 31 H 0.361 0.639 32 H 0.031 0.969 33 H 0.033 0.967 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.211 0.789 39 H 0.151 0.849 40 H 0.146 0.854 41 H 0.144 0.856 42 H 0.170 0.830 43 H 0.197 0.803 44 H 0.076 0.924 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 35.687 -8.202 -5.775 37.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.190 4.190 3 Si 0.712 3.288 4 H -0.209 1.209 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.375 4.375 8 H 0.108 0.892 9 N -0.402 5.402 10 C 0.042 3.958 11 C -0.130 4.130 12 H 0.103 0.897 13 C -0.163 4.163 14 C -0.031 4.031 15 N -0.346 5.346 16 C 0.395 3.605 17 O -0.420 6.420 18 C -0.291 4.291 19 C -0.102 4.102 20 N -0.105 5.105 21 N -0.092 5.092 22 C 0.139 3.861 23 C -0.182 4.182 24 C -0.078 4.078 25 C -0.204 4.204 26 C -0.023 4.023 27 N -0.217 5.217 28 C 0.009 3.991 29 C -0.006 4.006 30 H 0.069 0.931 31 H 0.194 0.806 32 H 0.049 0.951 33 H 0.051 0.949 34 H 0.103 0.897 35 H 0.101 0.899 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.227 0.773 39 H 0.169 0.831 40 H 0.164 0.836 41 H 0.162 0.838 42 H 0.187 0.813 43 H 0.214 0.786 44 H 0.094 0.906 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 35.761 -7.800 -6.189 37.121 hybrid contribution 0.466 1.155 0.101 1.249 sum 36.227 -6.645 -6.087 37.331 Atomic orbital electron populations 1.69701 1.05107 1.25833 1.57515 1.24662 0.95224 0.97208 1.01920 0.86584 0.79190 0.84981 0.78010 1.20877 1.21728 1.20324 1.19040 0.80580 0.94728 1.43170 0.89165 1.42722 1.04112 1.02194 1.91213 1.20570 0.86674 0.89521 0.99067 1.22651 0.97098 0.96051 0.97229 0.89685 1.22673 0.94132 0.97997 1.01514 1.22384 0.98903 0.86861 0.94918 1.48262 1.10046 1.26749 1.49579 1.16725 0.82898 0.82433 0.78396 1.90819 1.80417 1.25435 1.45324 1.20347 0.95438 1.01865 1.11443 1.25050 0.91124 0.96810 0.97230 1.77267 1.16120 1.05490 1.11623 1.45448 1.05570 1.20558 1.37588 1.17728 0.82636 0.92216 0.93554 1.21663 0.91899 1.01583 1.03026 1.21579 0.96736 0.96010 0.93516 1.22229 1.00988 0.96462 1.00750 1.22597 0.85877 0.98518 0.95303 1.66891 1.27397 1.16753 1.10693 1.23188 0.84102 0.96334 0.95494 1.22352 0.78880 1.01534 0.97871 0.93066 0.80594 0.95090 0.94935 0.89662 0.89889 0.90993 0.91056 0.77332 0.83141 0.83607 0.83780 0.81336 0.78616 0.90555 0.90219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.63 13.97 55.49 0.78 -28.85 16 2 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 3 Si 0.88 22.71 27.74 -169.99 -4.71 18.00 16 4 H -0.28 -7.30 7.11 56.52 0.40 -6.90 16 5 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 6 H -0.28 -6.74 6.52 56.52 0.37 -6.37 16 7 C -0.25 -6.97 10.47 -15.06 -0.16 -7.13 16 8 H 0.09 2.72 8.06 -52.48 -0.42 2.30 16 9 N -0.76 -17.83 5.26 -59.90 -0.31 -18.14 16 10 C 0.17 3.07 5.71 -4.04 -0.02 3.05 16 11 C -0.11 -1.57 3.10 -88.47 -0.27 -1.84 16 12 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 13 C -0.12 -1.22 6.42 -24.89 -0.16 -1.38 16 14 C 0.09 0.85 4.98 -3.06 -0.02 0.84 16 15 N -0.61 -8.28 3.33 -171.78 -0.57 -8.85 16 16 C 0.61 9.22 7.85 -12.52 -0.10 9.12 16 17 O -0.54 -10.34 17.16 5.27 0.09 -10.25 16 18 C -0.28 -3.45 6.09 -105.05 -0.64 -4.08 16 19 C 0.09 0.87 10.45 -16.95 -0.18 0.69 16 20 N -0.29 -3.12 11.74 30.88 0.36 -2.76 16 21 N -0.32 -3.59 3.76 -11.74 -0.04 -3.63 16 22 C 0.37 3.62 7.54 -154.37 -1.16 2.45 16 23 C -0.16 -1.18 9.69 -39.25 -0.38 -1.56 16 24 C -0.05 -0.24 10.17 -39.31 -0.40 -0.64 16 25 C -0.18 -0.75 10.11 -39.42 -0.40 -1.15 16 26 C 0.13 0.79 11.18 -17.57 -0.20 0.60 16 27 N -0.50 -4.73 9.83 -12.29 -0.12 -4.85 16 28 C 0.16 1.88 10.86 -16.41 -0.18 1.70 16 29 C 0.12 1.79 6.08 -2.53 -0.02 1.78 16 30 H 0.26 7.85 8.31 -40.82 -0.34 7.51 16 31 H 0.36 8.46 5.40 -40.82 -0.22 8.24 16 32 H 0.03 0.57 8.10 -51.93 -0.42 0.15 16 33 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.08 0.77 8.04 -51.93 -0.42 0.36 16 36 H 0.07 0.52 7.00 -51.93 -0.36 0.16 16 37 H 0.07 0.53 6.83 -51.93 -0.35 0.18 16 38 H 0.21 1.42 4.47 -52.49 -0.23 1.18 16 39 H 0.15 1.03 7.67 -52.49 -0.40 0.63 16 40 H 0.15 0.25 8.06 -52.49 -0.42 -0.17 16 41 H 0.14 0.16 8.06 -52.49 -0.42 -0.26 16 42 H 0.17 0.50 8.06 -52.48 -0.42 0.08 16 43 H 0.20 2.25 8.03 -52.48 -0.42 1.83 16 44 H 0.08 1.24 8.00 -51.93 -0.42 0.82 16 45 H 0.08 1.42 8.04 -51.93 -0.42 1.01 16 LS Contribution 376.24 15.07 5.67 5.67 Total: -1.00 -37.31 376.24 -9.04 -46.35 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -5.80 Total: 4.81 kcal Atomic # 6 Polarization: 6.89 SS G_CDS: -4.37 Total: 2.52 kcal Atomic # 7 Polarization: -67.17 SS G_CDS: 0.09 Total: -67.09 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: 0.09 Total: -10.25 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -4.71 Total: 18.00 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -37.31 -9.04 -46.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662690480.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.257 kcal (2) G-P(sol) polarization free energy of solvation -37.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds