Wall clock time and date at job start Sat Apr 11 2020 06:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86799 * 120.00010 * 2 1 4 4 H 1.48498 * 109.47123 * 269.99833 * 3 2 1 5 5 H 1.48497 * 109.47329 * 29.99998 * 3 2 1 6 6 H 1.48506 * 109.46940 * 149.99710 * 3 2 1 7 7 C 1.38814 * 120.00063 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99704 * 0.02562 * 7 2 1 9 9 N 1.36936 * 119.99891 * 179.97438 * 7 2 1 10 10 C 1.46504 * 119.99477 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.46883 * 180.02562 * 10 9 7 12 12 H 1.08998 * 110.88188 * 57.43085 * 11 10 9 13 13 C 1.55151 * 111.00243 * 181.35199 * 11 10 9 14 14 C 1.54333 * 102.94087 * 153.57957 * 13 11 10 15 15 N 1.47025 * 107.26889 * 337.80773 * 14 13 11 16 16 C 1.34773 * 125.64434 * 178.98223 * 15 14 13 17 17 O 1.21607 * 119.99702 * 179.97438 * 16 15 14 18 18 C 1.47423 * 120.00259 * 359.94915 * 16 15 14 19 19 C 1.41364 * 126.40499 * 0.03210 * 18 16 15 20 20 N 1.30441 * 108.07734 * 179.97438 * 19 18 16 21 21 N 1.39936 * 108.91888 * 0.02562 * 20 19 18 22 22 C 1.39813 * 125.77774 * 180.02562 * 21 20 19 23 23 C 1.38936 * 119.68868 * 359.69941 * 22 21 20 24 24 C 1.38427 * 119.10555 * 179.75497 * 23 22 21 25 25 C 1.38788 * 118.48132 * 0.50898 * 24 23 22 26 26 C 1.38126 * 119.29430 * 359.72966 * 25 24 23 27 27 N 1.31893 * 120.84652 * 0.02562 * 26 25 24 28 28 C 1.34620 * 108.44203 * 359.74607 * 21 20 19 29 29 C 1.47427 * 108.70462 * 358.93670 * 15 14 13 30 30 H 0.97001 * 119.99776 * 0.02562 * 1 2 3 31 31 H 0.96992 * 120.00556 * 0.02562 * 9 7 2 32 32 H 1.09001 * 109.46891 * 60.00526 * 10 9 7 33 33 H 1.08993 * 109.47378 * 299.99898 * 10 9 7 34 34 H 1.09005 * 110.72175 * 271.93919 * 13 11 10 35 35 H 1.08994 * 110.72573 * 35.21525 * 13 11 10 36 36 H 1.08994 * 109.87957 * 218.39074 * 14 13 11 37 37 H 1.08994 * 109.88221 * 97.22119 * 14 13 11 38 38 H 1.07998 * 125.96075 * 359.95358 * 19 18 16 39 39 H 1.08002 * 120.45026 * 359.97438 * 23 22 21 40 40 H 1.07997 * 120.75693 * 180.22340 * 24 23 22 41 41 H 1.07999 * 120.35379 * 179.70982 * 25 24 23 42 42 H 1.08004 * 119.58294 * 179.97438 * 26 25 24 43 43 H 1.08004 * 126.31656 * 180.24787 * 28 21 20 44 44 H 1.08995 * 110.36983 * 265.29764 * 29 15 14 45 45 H 1.09002 * 110.45687 * 143.01282 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2021 0.0000 10 6 4.1120 -2.4709 0.0011 11 6 5.6163 -2.1914 0.0009 12 1 5.8982 -1.5806 0.8586 13 6 6.4276 -3.5135 -0.0321 14 6 7.7536 -3.0887 -0.6978 15 7 7.4847 -1.8626 -1.4632 16 6 8.3929 -1.1652 -2.1739 17 8 8.0565 -0.1609 -2.7713 18 6 9.7944 -1.6196 -2.2265 19 6 10.3310 -2.7608 -1.5877 20 7 11.6021 -2.8245 -1.8735 21 7 11.9369 -1.7433 -2.6964 22 6 13.2078 -1.4710 -3.2115 23 6 14.2693 -2.3135 -2.9057 24 6 15.5214 -2.0354 -3.4264 25 6 15.6699 -0.9133 -4.2295 26 6 14.5712 -0.1169 -4.4878 27 7 13.3893 -0.4102 -3.9813 28 6 10.8268 -1.0132 -2.9130 29 6 6.0567 -1.5230 -1.3255 30 1 -0.4850 0.8401 -0.0004 31 1 3.8646 -0.3622 -0.0004 32 1 3.8484 -3.0434 -0.8882 33 1 3.8491 -3.0415 0.8918 34 1 6.6043 -3.8829 0.9781 35 1 5.9169 -4.2645 -0.6346 36 1 8.1006 -3.8753 -1.3677 37 1 8.5054 -2.8913 0.0663 38 1 9.7840 -3.4581 -0.9705 39 1 14.1190 -3.1759 -2.2731 40 1 16.3644 -2.6744 -3.2089 41 1 16.6342 -0.6652 -4.6478 42 1 14.6816 0.7577 -5.1118 43 1 10.7573 -0.1170 -3.5116 44 1 5.4878 -1.9289 -2.1619 45 1 5.9260 -0.4424 -1.2674 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001662690480.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:15 Heat of formation + Delta-G solvation = 94.273049 kcal Electronic energy + Delta-G solvation = -28028.100567 eV Core-core repulsion = 24047.568960 eV Total energy + Delta-G solvation = -3980.531607 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.97849 -41.24775 -40.62096 -38.77309 -36.60199 -34.99897 -33.98960 -33.61360 -32.43996 -31.68862 -30.87629 -30.04047 -27.53322 -25.59988 -25.11802 -24.72712 -23.55653 -22.58633 -22.15730 -21.43966 -20.71275 -19.77253 -19.31795 -17.83343 -17.52079 -17.37104 -16.97165 -16.81354 -16.55737 -16.40113 -16.03579 -15.78160 -15.46919 -15.24250 -14.91859 -14.72764 -14.57389 -14.31028 -14.08561 -14.07457 -13.88338 -13.68205 -13.33190 -13.07373 -12.93133 -12.78937 -12.44974 -12.23643 -11.92842 -11.82323 -11.75053 -11.68926 -11.54286 -11.11261 -11.04353 -10.98119 -10.79596 -10.46765 -9.73212 -9.46712 -9.28358 -8.03490 -5.35372 -0.56510 0.12695 0.61971 0.82449 1.01448 1.35690 1.39240 1.44254 1.89728 2.24601 2.46395 2.69199 3.05322 3.28499 3.28927 3.37911 3.60364 3.68701 3.73484 3.86893 3.88655 3.96970 4.01899 4.05971 4.18827 4.29612 4.32023 4.40307 4.48077 4.55281 4.67161 4.67662 4.81176 4.88455 4.93405 5.04657 5.07853 5.11319 5.16913 5.23183 5.31006 5.38736 5.45533 5.76844 5.77976 6.09928 6.21224 6.47028 6.74622 7.06653 7.08147 7.85735 8.01824 9.18003 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.024239 B = 0.001998 C = 0.001869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.871326 B =14007.407443 C =14975.669704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.982 5.982 2 C -0.061 4.061 3 Si 0.945 3.055 4 H -0.285 1.285 5 H -0.293 1.293 6 H -0.255 1.255 7 C -0.229 4.229 8 H 0.064 0.936 9 N -0.762 5.762 10 C 0.165 3.835 11 C -0.101 4.101 12 H 0.086 0.914 13 C -0.112 4.112 14 C 0.085 3.915 15 N -0.610 5.610 16 C 0.602 3.398 17 O -0.596 6.596 18 C -0.291 4.291 19 C 0.099 3.901 20 N -0.294 5.294 21 N -0.316 5.316 22 C 0.323 3.677 23 C -0.165 4.165 24 C -0.048 4.048 25 C -0.165 4.165 26 C 0.120 3.880 27 N -0.536 5.536 28 C 0.146 3.854 29 C 0.114 3.886 30 H 0.257 0.743 31 H 0.363 0.637 32 H 0.031 0.969 33 H 0.042 0.958 34 H 0.116 0.884 35 H 0.091 0.909 36 H 0.101 0.899 37 H 0.099 0.901 38 H 0.243 0.757 39 H 0.152 0.848 40 H 0.181 0.819 41 H 0.182 0.818 42 H 0.193 0.807 43 H 0.190 0.810 44 H 0.063 0.937 45 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 40.180 -9.810 -5.179 41.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.632 5.632 2 C -0.252 4.252 3 Si 0.773 3.227 4 H -0.212 1.212 5 H -0.219 1.219 6 H -0.180 1.180 7 C -0.361 4.361 8 H 0.082 0.918 9 N -0.408 5.408 10 C 0.039 3.961 11 C -0.121 4.121 12 H 0.105 0.895 13 C -0.150 4.150 14 C -0.036 4.036 15 N -0.342 5.342 16 C 0.393 3.607 17 O -0.478 6.478 18 C -0.305 4.305 19 C -0.090 4.090 20 N -0.111 5.111 21 N -0.090 5.090 22 C 0.098 3.902 23 C -0.187 4.187 24 C -0.074 4.074 25 C -0.185 4.185 26 C -0.037 4.037 27 N -0.249 5.249 28 C -0.002 4.002 29 C -0.009 4.009 30 H 0.066 0.934 31 H 0.195 0.805 32 H 0.049 0.951 33 H 0.059 0.941 34 H 0.134 0.866 35 H 0.109 0.891 36 H 0.119 0.881 37 H 0.117 0.883 38 H 0.259 0.741 39 H 0.169 0.831 40 H 0.198 0.802 41 H 0.200 0.800 42 H 0.210 0.790 43 H 0.207 0.793 44 H 0.082 0.918 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 40.337 -9.484 -5.566 41.809 hybrid contribution -0.783 1.574 -0.177 1.767 sum 39.554 -7.909 -5.743 40.743 Atomic orbital electron populations 1.69860 1.06888 1.26505 1.59992 1.25404 0.96021 1.00808 1.03014 0.85551 0.78736 0.80527 0.77846 1.21205 1.21944 1.17959 1.19080 0.82743 0.93548 1.40679 0.91841 1.42816 1.02586 1.04408 1.90959 1.20785 0.88915 0.87226 0.99183 1.22488 0.94647 0.98794 0.96144 0.89542 1.22707 0.93198 0.95431 1.03651 1.22764 0.99447 0.85660 0.95754 1.48290 1.08771 1.27812 1.49330 1.17131 0.84008 0.81843 0.77767 1.90778 1.81434 1.27897 1.47741 1.20122 0.93921 1.03368 1.13060 1.25461 0.90671 0.96124 0.96709 1.77228 1.16491 1.05602 1.11785 1.45626 1.05937 1.20186 1.37239 1.18070 0.82653 0.93830 0.95607 1.21837 0.92393 1.01216 1.03219 1.22043 0.96501 0.96410 0.92459 1.22681 1.01807 0.95082 0.98950 1.23187 0.85536 0.99686 0.95332 1.66846 1.29390 1.17227 1.11447 1.23180 0.84862 0.96508 0.95664 1.22187 0.80483 0.99752 0.98440 0.93391 0.80465 0.95080 0.94051 0.86595 0.89072 0.88096 0.88297 0.74100 0.83051 0.80162 0.80025 0.79042 0.79320 0.91823 0.93358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -64.05 13.97 21.65 0.30 -63.75 16 2 C -0.06 -3.68 5.50 84.86 0.47 -3.21 16 3 Si 0.95 47.75 27.74 68.60 1.90 49.65 16 4 H -0.29 -14.46 7.11 99.48 0.71 -13.75 16 5 H -0.29 -14.80 7.11 99.48 0.71 -14.09 16 6 H -0.25 -11.77 6.52 99.48 0.65 -11.13 16 7 C -0.23 -13.23 10.47 84.03 0.88 -12.35 16 8 H 0.06 3.94 8.06 -2.91 -0.02 3.92 16 9 N -0.76 -35.76 5.26 -343.43 -1.81 -37.56 16 10 C 0.16 5.80 5.71 86.38 0.49 6.29 16 11 C -0.10 -2.67 3.10 -9.40 -0.03 -2.70 16 12 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 13 C -0.11 -1.74 6.42 31.78 0.20 -1.54 16 14 C 0.08 1.24 4.98 86.73 0.43 1.68 16 15 N -0.61 -15.85 3.33 -815.65 -2.71 -18.56 16 16 C 0.60 18.52 7.85 86.66 0.68 19.20 16 17 O -0.60 -24.01 17.16 -4.05 -0.07 -24.08 16 18 C -0.29 -7.15 6.09 -20.14 -0.12 -7.27 16 19 C 0.10 1.77 10.45 85.67 0.89 2.66 16 20 N -0.29 -5.95 11.74 -56.23 -0.66 -6.61 16 21 N -0.32 -7.13 3.76 -191.05 -0.72 -7.85 16 22 C 0.32 6.30 7.54 132.76 1.00 7.30 16 23 C -0.16 -2.18 9.69 22.48 0.22 -1.96 16 24 C -0.05 -0.29 10.17 22.45 0.23 -0.06 16 25 C -0.17 -0.78 10.11 22.37 0.23 -0.56 16 26 C 0.12 1.21 11.18 84.66 0.95 2.15 16 27 N -0.54 -9.95 9.83 -192.80 -1.89 -11.85 16 28 C 0.15 3.66 10.86 84.21 0.91 4.57 16 29 C 0.11 3.55 6.08 86.86 0.53 4.07 16 30 H 0.26 16.04 8.31 -92.71 -0.77 15.27 16 31 H 0.36 16.79 5.40 -92.71 -0.50 16.29 16 32 H 0.03 1.11 8.10 -2.39 -0.02 1.09 16 33 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.12 1.20 8.14 -2.38 -0.02 1.19 16 35 H 0.09 1.33 8.04 -2.39 -0.02 1.31 16 36 H 0.10 0.99 7.00 -2.39 -0.02 0.97 16 37 H 0.10 0.99 6.83 -2.39 -0.02 0.97 16 38 H 0.24 2.27 4.47 -2.91 -0.01 2.25 16 39 H 0.15 1.86 7.67 -2.91 -0.02 1.84 16 40 H 0.18 -0.20 8.06 -2.91 -0.02 -0.23 16 41 H 0.18 -0.52 8.06 -2.91 -0.02 -0.54 16 42 H 0.19 0.76 8.06 -2.91 -0.02 0.74 16 43 H 0.19 4.78 8.03 -2.91 -0.02 4.75 16 44 H 0.06 2.11 8.00 -2.39 -0.02 2.09 16 45 H 0.05 1.78 8.04 -2.39 -0.02 1.77 16 Total: -1.00 -86.70 376.24 2.78 -83.92 By element: Atomic # 1 Polarization: 17.93 SS G_CDS: 0.47 Total: 18.40 kcal Atomic # 6 Polarization: 10.33 SS G_CDS: 7.96 Total: 18.29 kcal Atomic # 7 Polarization: -138.69 SS G_CDS: -7.49 Total: -146.18 kcal Atomic # 8 Polarization: -24.01 SS G_CDS: -0.07 Total: -24.08 kcal Atomic # 14 Polarization: 47.75 SS G_CDS: 1.90 Total: 49.65 kcal Total: -86.70 2.78 -83.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662690480.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.195 kcal (2) G-P(sol) polarization free energy of solvation -86.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds